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Haplogroup W (mtDNA)

January 07, 2023

Haplogroup W is a human mitochondrial DNA (mtDNA) haplogroup.

Haplogroup W
Possible time of origin23,900 ybp[1]
Possible place of originWestern Asia
AncestorN2
DescendantsW1, C194T, W3, W4, W5, W6, W7
Defining mutations195 204 207 1243 3505 5460 8251 8994 11947 15884C 16292[2]

Origin

Haplogroup W is believed to have originated around 23,900 years ago in Western Asia.[1] It is descended from the haplogroup N2.

Distribution

 
Projected spatial distribution of haplogroup W.

Haplogroup W is found in Europe, Western Asia, and South Asia.[3] It is widely distributed at low frequencies, with a high concentration in Northern Pakistan.[4] Haplogroup W is also found in the Maghreb among Algerians (1.08%-3.23%)[5] and in Siberia among Yakuts (6/423 = 1.42%[6]).

Additionally, the clade has been observed among ancient Egyptian mummies excavated at the Abusir el-Meleq archaeological site in Middle Egypt, which date from the Ptolemaic Kingdom.[7]

The W5 subclade has been found in a fossil associated with the Starčevo culture (Lánycsók site; 1/1 or 100%).[8]

Ancient DNA analysis found that the medieval individual Sungir 6 (730-850 cal BP) belonged to the W3a1 subclade.[9]

Subclades

Tree

 
Phylogenetic tree of haplogroups I (left) and W (right). Kya in the left scale bar stands for thousand years ago.

This phylogenetic tree of haplogroup W subclades is based on the paper by Mannis van Oven and Manfred Kayser Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation[2] and subsequent published research.

  • W
    • W1
      • W1a
      • W1b
      • T119C
        • W1c
          • W1c1
      • W1d
      • W1e
      • W1f
      • W1g
      • C194T
        • W3
          • W3a
            • W3a1
              • W3a1a
                • W3a1a1
              • W3a1b
                • T199C
                  • W3a1c
            • W3a2
          • W3b
            • W3b1
        • W4
          • W4a
        • W5
          • W5a
            • W5a1
              • W5a1a
                • W5a1a1
                  • W5a1a1a
            • W5a2
          • W5b
        • W6
          • C16192T
            • W6a
            • W6b
          • W6c
        • W7

See also

 
Wikimedia Commons has media related to Haplogroup W (mtDNA).

Phylogenetic tree of human mitochondrial DNA (mtDNA) haplogroups

  Mitochondrial Eve (L)    
L0 L1–6  
L1 L2   L3     L4 L5 L6
M N  
CZ D E G Q   O A S R   I W X Y
C Z B F R0   pre-JT   P   U
HV JT K
H V J T

References

  1. ^ a b Soares, Pedro; Luca Ermini; Noel Thomson; Maru Mormina; Teresa Rito; Arne Röhl; Antonio Salas; Stephen Oppenheimer; Vincent Macaulay; Martin B. Richards (4 Jun 2009). "Supplemental Data Correcting for Purifying Selection: An Improved Human Mitochondrial Molecular Clock". The American Journal of Human Genetics. 84 (6): 82–93. doi:10.1016/j.ajhg.2009.05.001. PMC 2694979. PMID 19500773.
  2. ^ a b van Oven, Mannis; Manfred Kayser (13 Oct 2008). "Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation". Human Mutation. 30 (2): E386–E394. doi:10.1002/humu.20921. PMID 18853457. S2CID 27566749.
  3. ^ Petraglia, Michael D.; Allchin, Bridget (2007). The Evolution and History of Human Populations in South Asia: Inter-disciplinary Studies in Archaeology, Biological Anthropology, Linguistics and Genetics. Springer Science & Business Media. p. 237. ISBN 978-1-4020-5562-1.
  4. ^ Meit Metspalu et al., Most of the extant mtDNA boundaries in South and Southwest Asia were likely shaped during the initial settlement of Eurasia by anatomically modern humans. BMC Genetics, 2004
  5. ^ Asmahan Bekada; Lara R. Arauna; Tahria Deba; Francesc Calafell; Soraya Benhamamouch; David Comas (September 24, 2015). "Genetic Heterogeneity in Algerian Human Populations". PLOS ONE. 10 (9): e0138453. Bibcode:2015PLoSO..1038453B. doi:10.1371/journal.pone.0138453. PMC 4581715. PMID 26402429.; S5 Table
  6. ^ Sardana A Fedorova, Maere Reidla, Ene Metspalu, et al., "Autosomal and uniparental portraits of the native populations of Sakha (Yakutia): implications for the peopling of Northeast Eurasia." BMC Evolutionary Biology 2013, 13:127. http://www.biomedcentral.com/1471-2148/13/127
  7. ^ Schuenemann, Verena J.; et al. (2017). "Ancient Egyptian mummy genomes suggest an increase of Sub-Saharan African ancestry in post-Roman periods". Nature Communications. 8: 15694. Bibcode:2017NatCo...815694S. doi:10.1038/ncomms15694. PMC 5459999. PMID 28556824.
  8. ^ Mark Lipson; et al. (2017). "Parallel palaeogenomic transects reveal complex genetic history of early European farmers". Nature. 551 (7680): 368–372. Bibcode:2017Natur.551..368L. doi:10.1038/nature24476. PMC 5973800. PMID 29144465. Retrieved 18 November 2017.
  9. ^ Sikora, Martin; Seguin-Orlando, Andaine; Sousa, Vitor C.; Albrechtsen, Anders; Korneliussen, Thorfinn; Ko, Amy; Rasmussen, Simon; Dupanloup, Isabelle; Nigst, Philip R.; Bosch, Marjolein D.; Renaud, Gabriel; Allentoft, Morten E.; Margaryan, Ashot; Vasilyev, Sergey V.; Veselovskaya, Elizaveta V.; Borutskaya, Svetlana B.; Deviese, Thibaut; Comeskey, Dan; Higham, Tom; Manica, Andrea; Foley, Robert; Meltzer, David J.; Nielsen, Rasmus; Excoffier, Laurent; Lahr, Marta Mirazon; Orlando, Ludovic; Willerslev, Eske (2017). "Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers". Science. 358 (6363): 659–662. Bibcode:2017Sci...358..659S. doi:10.1126/science.aao1807. ISSN 0036-8075. PMID 28982795.

External links

  • General
    • Mannis van Oven's Phylotree
    • The India Genealogical DNA Project
  • Haplogroup W


 

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This bioinformatics-related article is a stub. You can help Wikipedia by expanding it.

January 07, 2023
haplogroup, mtdna, haplogroup, human, mitochondrial, mtdna, haplogroup, haplogroup, wpossible, time, origin23, possible, place, originwestern, asiaancestorn2descendantsw1, c194t, w7defining, mutations195, 1243, 3505, 5460, 8251, 8994, 11947, 15884c, 16292, con. Haplogroup W is a human mitochondrial DNA mtDNA haplogroup Haplogroup WPossible time of origin23 900 ybp 1 Possible place of originWestern AsiaAncestorN2DescendantsW1 C194T W3 W4 W5 W6 W7Defining mutations195 204 207 1243 3505 5460 8251 8994 11947 15884C 16292 2 Contents 1 Origin 2 Distribution 3 Subclades 3 1 Tree 4 See also 5 References 6 External linksOrigin EditHaplogroup W is believed to have originated around 23 900 years ago in Western Asia 1 It is descended from the haplogroup N2 Distribution Edit Projected spatial distribution of haplogroup W Haplogroup W is found in Europe Western Asia and South Asia 3 It is widely distributed at low frequencies with a high concentration in Northern Pakistan 4 Haplogroup W is also found in the Maghreb among Algerians 1 08 3 23 5 and in Siberia among Yakuts 6 423 1 42 6 Additionally the clade has been observed among ancient Egyptian mummies excavated at the Abusir el Meleq archaeological site in Middle Egypt which date from the Ptolemaic Kingdom 7 The W5 subclade has been found in a fossil associated with the Starcevo culture Lanycsok site 1 1 or 100 8 Ancient DNA analysis found that the medieval individual Sungir 6 730 850 cal BP belonged to the W3a1 subclade 9 Subclades EditTree Edit Phylogenetic tree of haplogroups I left and W right Kya in the left scale bar stands for thousand years ago This phylogenetic tree of haplogroup W subclades is based on the paper by Mannis van Oven and Manfred Kayser Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation 2 and subsequent published research W W1 W1a W1b T119C W1c W1c1 W1d W1e W1f W1g C194T W3 W3a W3a1 W3a1a W3a1a1 W3a1b T199C W3a1c W3a2 W3b W3b1 W4 W4a W5 W5a W5a1 W5a1a W5a1a1 W5a1a1a W5a2 W5b W6 C16192T W6a W6b W6c W7See also Edit Wikimedia Commons has media related to Haplogroup W mtDNA Genealogical DNA test Genetic genealogy Human mitochondrial genetics Population geneticsPhylogenetic tree of human mitochondrial DNA mtDNA haplogroups Mitochondrial Eve L L0 L1 6 L1 L2 L3 L4 L5 L6M N CZ D E G Q O A S R I W X YC Z B F R0 pre JT P UHV JT KH V J TReferences Edit a b Soares Pedro Luca Ermini Noel Thomson Maru Mormina Teresa Rito Arne Rohl Antonio Salas Stephen Oppenheimer Vincent Macaulay Martin B Richards 4 Jun 2009 Supplemental Data Correcting for Purifying Selection An Improved Human Mitochondrial Molecular Clock The American Journal of Human Genetics 84 6 82 93 doi 10 1016 j ajhg 2009 05 001 PMC 2694979 PMID 19500773 a b van Oven Mannis Manfred Kayser 13 Oct 2008 Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation Human Mutation 30 2 E386 E394 doi 10 1002 humu 20921 PMID 18853457 S2CID 27566749 Petraglia Michael D Allchin Bridget 2007 The Evolution and History of Human Populations in South Asia Inter disciplinary Studies in Archaeology Biological Anthropology Linguistics and Genetics Springer Science amp Business Media p 237 ISBN 978 1 4020 5562 1 Meit Metspalu et al Most of the extant mtDNA boundaries in South and Southwest Asia were likely shaped during the initial settlement of Eurasia by anatomically modern humans BMC Genetics 2004 Asmahan Bekada Lara R Arauna Tahria Deba Francesc Calafell Soraya Benhamamouch David Comas September 24 2015 Genetic Heterogeneity in Algerian Human Populations PLOS ONE 10 9 e0138453 Bibcode 2015PLoSO 1038453B doi 10 1371 journal pone 0138453 PMC 4581715 PMID 26402429 S5 Table Sardana A Fedorova Maere Reidla Ene Metspalu et al Autosomal and uniparental portraits of the native populations of Sakha Yakutia implications for the peopling of Northeast Eurasia BMC Evolutionary Biology 2013 13 127 http www biomedcentral com 1471 2148 13 127 Schuenemann Verena J et al 2017 Ancient Egyptian mummy genomes suggest an increase of Sub Saharan African ancestry in post Roman periods Nature Communications 8 15694 Bibcode 2017NatCo 815694S doi 10 1038 ncomms15694 PMC 5459999 PMID 28556824 Mark Lipson et al 2017 Parallel palaeogenomic transects reveal complex genetic history of early European farmers Nature 551 7680 368 372 Bibcode 2017Natur 551 368L doi 10 1038 nature24476 PMC 5973800 PMID 29144465 Retrieved 18 November 2017 Sikora Martin Seguin Orlando Andaine Sousa Vitor C Albrechtsen Anders Korneliussen Thorfinn Ko Amy Rasmussen Simon Dupanloup Isabelle Nigst Philip R Bosch Marjolein D Renaud Gabriel Allentoft Morten E Margaryan Ashot Vasilyev Sergey V Veselovskaya Elizaveta V Borutskaya Svetlana B Deviese Thibaut Comeskey Dan Higham Tom Manica Andrea Foley Robert Meltzer David J Nielsen Rasmus Excoffier Laurent Lahr Marta Mirazon Orlando Ludovic Willerslev Eske 2017 Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers Science 358 6363 659 662 Bibcode 2017Sci 358 659S doi 10 1126 science aao1807 ISSN 0036 8075 PMID 28982795 External links EditGeneral Mannis van Oven s Phylotree The India Genealogical DNA Project Haplogroup W Spread of Haplogroup W from National Geographic mtDNA Haplogroup W Project This genetics article is a stub You can help Wikipedia by expanding it vte This bioinformatics related article is a stub You can help Wikipedia by expanding it vte Retrieved from https en wikipedia org w index php title Haplogroup W mtDNA amp oldid 1041686712, wikipedia, wiki, book, books, library,

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