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Plant genetics

Plant genetics is the study of genes, genetic variation, and heredity specifically in plants.[1][2] It is generally considered a field of biology and botany, but intersects frequently with many other life sciences and is strongly linked with the study of information systems. Plant genetics is similar in many ways to animal genetics but differs in a few key areas.

An image of multiple chromosomes, taken from many cells

The discoverer of genetics was Gregor Mendel, a late 19th-century scientist and Augustinian friar. Mendel studied "trait inheritance", patterns in the way traits are handed down from parents to offspring. He observed that organisms (most famously pea plants) inherit traits by way of discrete "units of inheritance". This term, still used today, is a somewhat ambiguous definition of what is referred to as a gene. Much of Mendel's work with plants still forms the basis for modern plant genetics.

Plants, like all known organisms, use DNA to pass on their traits. Animal genetics often focuses on parentage and lineage, but this can sometimes be difficult in plant genetics due to the fact that plants can, unlike most animals, be self-fertile. Speciation can be easier in many plants due to unique genetic abilities, such as being well adapted to polyploidy. Plants are unique in that they are able to produce energy-dense carbohydrates via photosynthesis, a process which is achieved by use of chloroplasts. Chloroplasts, like the superficially similar mitochondria, possess their own DNA. Chloroplasts thus provide an additional reservoir for genes and genetic diversity, and an extra layer of genetic complexity not found in animals.

The study of plant genetics has major economic impacts: many staple crops are genetically modified to increase yields, confer pest and disease resistance, provide resistance to herbicides, or to increase their nutritional value.

History edit

The earliest evidence of plant domestication found has been dated to 11,000 years before present in ancestral wheat. While initially selection may have happened unintentionally, it is very likely that by 5,000 years ago farmers had a basic understanding of heredity and inheritance, the foundation of genetics.[3] This selection over time gave rise to new crop species and varieties that are the basis of the crops we grow, eat and research today.

 
Gregor Mendel, the "Father of genetics"

The field of plant genetics began with the work of Gregor Johann Mendel, who is often called the "father of genetics". He was an Augustinian priest and scientist born on 20 July 1822 in Austria-Hungary. He worked at the Abbey of St. Thomas in Brünn (now Brno, Czech Republic), where his organism of choice for studying inheritance and traits was the pea plant. Mendel's work tracked many phenotypic traits of pea plants, such as their height, flower color, and seed characteristics. Mendel showed that the inheritance of these traits follows two particular laws, which were later named after him. His seminal work on genetics, “Versuche über Pflanzen-Hybriden” (Experiments on Plant Hybrids), was published in 1866, but went almost entirely unnoticed until 1900 when prominent botanists in the UK, like Sir Gavin de Beer, recognized its importance and re-published an English translation.[4] Mendel died in 1884. The significance of Mendel's work was not recognized until the turn of the 20th century. Its rediscovery prompted the foundation of modern genetics. His discoveries, deduction of segregation ratios, and subsequent laws have not only been used in research to gain a better understanding of plant genetics, but also play a large role in plant breeding.[3] Mendel's works along with the works of Charles Darwin and Alfred Wallace on selection provided the basis for much of genetics as a discipline.

In the early 1900s, botanists and statisticians began to examine the segregation ratios put forth by Mendel. W.E. Castle discovered that while individual traits may segregate and change over time with selection, that when selection is stopped and environmental effects are taken into account, the genetic ratio stops changing and reach a sort of stasis, the foundation of Population Genetics.[5] This was independently discovered by G. H. Hardy and W. Weinberg, which ultimately gave rise to the concept of Hardy–Weinberg equilibrium published in 1908.[6]

For a more thorough exploration of the history of population genetics, see History of Population Genetics by Bob Allard.

Around this same time, genetic and plant breeding experiments in maize began. Maize that has been self-pollinated experiences a phenomenon called inbreeding depression. Researchers, like Nils Heribert-Nilsson, recognized that by crossing plants and forming hybrids, they were not only able to combine traits from two desirable parents, but the crop also experienced heterosis or hybrid vigor. This was the beginning of identifying gene interactions or epistasis. By the early 1920s, Donald Forsha Jones had invented a method that led to the first hybrid maize seed that were available commercially.[7] The large demand for hybrid seed in the U.S. Corn Belt by the mid 1930s led to a rapid growth in the seed production industry and ultimately seed research. The strict requirements for producing hybrid seed led to the development of careful population and inbred line maintenance, keeping plants isolated and unable to out-cross, which produced plants that better allowed researchers to tease out different genetic concepts. The structure of these populations allowed scientist such a T. Dobzhansky, S. Wright, and R.A. Fisher to develop evolutionary biology concepts as well as explore speciation over time and the statistics underlying plant genetics.[8][9][10] Their work laid the foundations for future genetic discoveries such as linkage disequilibrium in 1960.[11]

While breeding experiments were taking place, other scientists such as Nikolai Vavilov[12] and Charles M. Rick were interested in wild progenitor species of modern crop plants. Botanists between the 1920s and 1960s often would travel to regions of high plant diversity and seek out wild species that had given rise to domesticated species after selection. Determining how crops changed over time with selection was initially based on morphological features. It developed over time to chromosomal analysis, then genetic marker analysis, and eventual genomic analysis. Identifying traits and their underlying genetics allowed for transferring useful genes and the traits they controlled from either wild or mutant plants to crop plants. Understanding and manipulating of plant genetics was in its heyday during the Green Revolution brought about by Norman Borlaug. During this time, the molecule of heredity, DNA, was also discovered, which allowed scientists to actually examine and manipulate genetic information directly.

DNA edit

 
The structure of part of a DNA double helix

Deoxyribonucleic acid (DNA) is a nucleic acid that contains the genetic instructions used in the development and functioning of all known living organisms and some viruses. The main role of DNA molecules is the long-term storage of information. DNA is often compared to a set of blueprints or a recipe, or a code, since it contains the instructions needed to construct other components of cells, such as proteins and RNA molecules. The DNA segments that carry this genetic information are called genes, and their location within the genome are referred to as genetic loci, but other DNA sequences have structural purposes, or are involved in regulating the use of this genetic information.

Geneticists, including plant geneticists, use this sequence of DNA to their advantage to better find and understand the role of different genes within a given genome. Through research and plant breeding, manipulation of different plant genes and loci encoded by the DNA sequence of the plant chromosomes by various methods can be done to produce different or desired genotypes that result in different or desired phenotypes.[13]

Meiosis edit

During plant meiosis, double-strand breaks are introduced into the DNA genome and these breaks can be repaired by a recombination process employing gene products RAD51 and DMC1 that are homologous to recombinases employed by eukaryotes generally.[14] Central elements of eukaryotic meiosis are pairing of homologous chromosomes, double-strand break formation and homologous recombinational repair.[15] These processes appear to be optimized for repairing DNA damage in the germline.[15]

Plant Specific Genetics edit

Plants, like all other known living organisms, pass on their traits using DNA. Plants however are unique from other living organisms in the fact that they have chloroplasts. Like mitochondria, chloroplasts have their own DNA. Like animals, plants experience somatic mutations regularly, but these mutations can contribute to the germ line with ease, since flowers develop at the ends of branches composed of somatic cells. People have known of this for centuries, and mutant branches are called "sports". If the fruit on the sport is economically desirable, a new cultivar may be obtained.

Some plant species are capable of self-fertilization, and some are nearly exclusively self-fertilizers. This means that a plant can be both mother and father to its offspring, a rare occurrence in animals. Scientists and hobbyists attempting to make crosses between different plants must take special measures to prevent the plants from self-fertilizing. In plant breeding, people create hybrids between plant species for economic and aesthetic reasons. For example, the yield of Corn has increased nearly five-fold in the past century due in part to the discovery and proliferation of hybrid corn varieties.[16] Plant genetics can be used to predict which combination of plants may produce a plant with Hybrid vigor, or conversely many discoveries in Plant genetics have come from studying the effects of hybridization.

Plants are generally more capable of surviving, and indeed flourishing, as polyploids. Polyploid organisms have more than two sets of homologous chromosomes. For example, humans have two sets of homologous chromosomes, meaning that a typical human will have 2 copies each of 23 different chromosomes, for a total of 46. Wheat on the other hand, while having only 7 distinct chromosomes, is considered a hexaploid and has 6 copies of each chromosome, for a total of 42.[17] In animals, inheritable germline polyploidy is less common, and spontaneous chromosome increases may not even survive past fertilization. In plants however this is less of a problem. Polyploid individuals are created frequently by a variety of processes; however, once created, they usually cannot cross back to the parental type. Polyploid individuals that are capable of self-fertilizing can give rise to a new, genetically distinct lineage, which can be the start of a new species. This is often called "instant speciation". Polyploids generally have larger fruit, an economically desirable trait, and many human food crops, including wheat, maize, potatoes, peanuts,[18] strawberries and tobacco, are either accidentally or deliberately created polyploids.

 
Arabidopsis thaliana, growing from between a crack in a sidewalk; it is considered a key model organism in plant genetics.

Model organisms edit

Arabidopsis thaliana edit

Arabidopsis thaliana, also known as thale cress, has been the model organism for the study of plant genetics. As Drosophila, a species of fruit fly, was to the understanding of early genetics, so has been A. thaliana to the understanding of plant genetics. It was the first plant to ever have its genome sequenced in the year 2000. It has a small genome, making the initial sequencing more attainable. It has a genome size of 125 Mbp that encodes about 25,000 genes.[19] Because an incredible amount of research has been done on the plant, a database called The Arabidopsis Information Resource (TAIR) has been established as a repository for multiple data sets and information on the species. Information housed in TAIR include the complete genome sequence along with gene structure, gene product information, gene expression, DNA and seed stocks, genome maps, genetic and physical markers, publications, and information about the A. thaliana research community.[20] Many natural inbred accessions of A. thaliana (often referred to as "ecotypes") are available and have been useful in genetic research. This natural variation has been used to identify loci important in both biotic and abiotic stress resistance.[21]

Brachypodium distachyon edit

Brachypodium distachyon is an experimental model grass that has many attributes that make it an excellent model for temperate cereals. Unlike wheat, a tetra or hexaploid species, brachypodium is diploid with a relatively small genome (~355 Mbp) with a short life-cycle, making genomic studies on it simpler.

Nicotiana benthamiana edit

Nicotiana benthamiana is a popular model organism for both plant-pathogen and transgenic studies. Because its broad leaves are easily transiently transformed with Agrobacterium tumefaciens, it is used to study both the expression of pathogen genes introduced into a plant or test new genetic cassette effects.

Other model plants edit

Other models include the alga Chlamydomonas reinhardtii, the moss Physcomitrella patens, the clover Medicago truncatula, Antirrhinum majus (snapdragon), the C4 grass Setaria viridis, and maize (corn).

Genetically modified crops edit

Genetically modified (GM) foods are produced from organisms that have had changes introduced into their DNA using the methods of genetic engineering. Genetic engineering techniques allow for the introduction of new traits as well as greater control over traits than previous methods such as selective breeding and mutation breeding.[22]

Genetically modifying plants is an important economic activity: in 2017, 89% of corn, 94% of soybeans, and 91% of cotton produced in the US were from genetically modified strains.[23] Since the introduction of GM crops, yields have increased by 22%, and profits have increased to farmers, especially in the developing world, by 68%. An important side effect of GM crops has been decreased land requirements,[24]

Commercial sale of genetically modified foods began in 1994, when Calgene first marketed its unsuccessful Flavr Savr delayed-ripening tomato.[25][26] Most food modifications have primarily focused on cash crops in high demand by farmers such as soybean, corn, canola, and cotton. Genetically modified crops have been engineered for resistance to pathogens and herbicides and for better nutrient profiles.[27] Other such crops include the economically important GM papaya which are resistant to the highly destructive Papaya ringspot virus, and the nutritionally improved golden rice (it is however still in development).[28]

There is a scientific consensus[29][30][31][32] that currently available food derived from GM crops poses no greater risk to human health than conventional food,[33][34][35][36][37] but that each GM food needs to be tested on a case-by-case basis before introduction.[38][39] Nonetheless, members of the public are much less likely than scientists to perceive GM foods as safe.[40][41][42][43] The legal and regulatory status of GM foods varies by country, with some nations banning or restricting them, and others permitting them with widely differing degrees of regulation.[44][45][46][47] There are still ongoing public concerns related to food safety, regulation, labeling, environmental impact, research methods, and the fact that some GM seeds are subject to intellectual property rights owned by corporations.[48]

Modern ways to genetically modify plants edit

Genetic modification has been the cause for much research into modern plant genetics, and has also led to the sequencing of many plant genomes. Today there are two predominant procedures of transforming genes in organisms: the "Gene gun" method and the Agrobacterium method.

"Gene gun" method edit

The gene gun method is also referred to as "biolistics" (ballistics using biological components). This technique is used for in vivo (within a living organism) transformation and has been especially useful in monocot species like corn and rice. This approach literally shoots genes into plant cells and plant cell chloroplasts. DNA is coated onto small particles of gold or tungsten approximately two micrometers in diameter. The particles are placed in a vacuum chamber and the plant tissue to be engineered is placed below the chamber. The particles are propelled at high velocity using a short pulse of high pressure helium gas, and hit a fine mesh baffle placed above the tissue while the DNA coating continues into any target cell or tissue.

Agrobacterium method edit

Transformation via Agrobacterium has been successfully practiced in dicots, i.e. broadleaf plants, such as soybeans and tomatoes, for many years. Recently it has been adapted and is now effective in monocots like grasses, including corn and rice. In general, the Agrobacterium method is considered preferable to the gene gun, because of a greater frequency of single-site insertions of the foreign DNA, which allows for easier monitoring. In this method, the tumor inducing (Ti) region is removed from the T-DNA (transfer DNA) and replaced with the desired gene and a marker, which is then inserted into the organism. This may involve direct inoculation of the tissue with a culture of transformed Agrobacterium, or inoculation following treatment with micro-projectile bombardment, which wounds the tissue.[49] Wounding of the target tissue causes the release of phenolic compounds by the plant, which induces invasion of the tissue by Agrobacterium. Because of this, microprojectile bombardment often increases the efficiency of infection with Agrobacterium. The marker is used to find the organism which has successfully taken up the desired gene. Tissues of the organism are then transferred to a medium containing an antibiotic or herbicide, depending on which marker was used. The Agrobacterium present is also killed by the antibiotic. Only tissues expressing the marker will survive and possess the gene of interest. Thus, subsequent steps in the process will only use these surviving plants. In order to obtain whole plants from these tissues, they are grown under controlled environmental conditions in tissue culture. This is a process of a series of media, each containing nutrients and hormones. Once the plants are grown and produce seed, the process of evaluating the progeny begins. This process entails selection of the seeds with the desired traits and then retesting and growing to make sure that the entire process has been completed successfully with the desired results.

See also edit

References edit

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  32. ^ But see also:

    Domingo, José L.; Bordonaba, Jordi Giné (2011). "A literature review on the safety assessment of genetically modified plants" (PDF). Environment International. 37 (4): 734–742. doi:10.1016/j.envint.2011.01.003. PMID 21296423.

    Krimsky, Sheldon (2015). (PDF). Science, Technology, & Human Values. 40 (6): 883–914. doi:10.1177/0162243915598381. S2CID 40855100. Archived from the original (PDF) on 2016-02-07. Retrieved 2017-03-29.

    And contrast:

    Panchin, Alexander Y.; Tuzhikov, Alexander I. (January 14, 2016). "Published GMO studies find no evidence of harm when corrected for multiple comparisons". Critical Reviews in Biotechnology. 37 (2): 213–217. doi:10.3109/07388551.2015.1130684. PMID 26767435. S2CID 11786594.

    and

    Yang, Y.T.; Chen, B. (2016). "Governing GMOs in the USA: science, law and public health". Journal of the Science of Food and Agriculture. 96 (6): 1851–1855. Bibcode:2016JSFA...96.1851Y. doi:10.1002/jsfa.7523. PMID 26536836.

  33. ^ "Statement by the AAAS Board of Directors On Labeling of Genetically Modified Foods" (PDF). American Association for the Advancement of Science. October 20, 2012. Retrieved February 8, 2016.

    Pinholster, Ginger (October 25, 2012). "AAAS Board of Directors: Legally Mandating GM Food Labels Could "Mislead and Falsely Alarm Consumers"". American Association for the Advancement of Science. Retrieved February 8, 2016.

  34. ^ European Commission. Directorate-General for Research (2010). A decade of EU-funded GMO research (2001–2010) (PDF). Directorate-General for Research and Innovation. Biotechnologies, Agriculture, Food. European Commission, European Union. doi:10.2777/97784. ISBN 978-92-79-16344-9. Retrieved February 8, 2016.
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  37. ^ National Academies Of Sciences, Engineering; Division on Earth Life Studies; Board on Agriculture Natural Resources; Committee on Genetically Engineered Crops: Past Experience Future Prospects (2016). Genetically Engineered Crops: Experiences and Prospects. The National Academies of Sciences, Engineering, and Medicine (US). p. 149. doi:10.17226/23395. ISBN 978-0-309-43738-7. PMID 28230933. Retrieved May 19, 2016.
  38. ^ "Frequently asked questions on genetically modified foods". World Health Organization. Retrieved February 8, 2016.
  39. ^ Haslberger, Alexander G. (2003). "Codex guidelines for GM foods include the analysis of unintended effects". Nature Biotechnology. 21 (7): 739–741. doi:10.1038/nbt0703-739. PMID 12833088. S2CID 2533628.
  40. ^ Funk, Cary; Rainie, Lee (January 29, 2015). "Public and Scientists' Views on Science and Society". Pew Research Center. Retrieved February 24, 2016.
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  44. ^ "Restrictions on Genetically Modified Organisms". Library of Congress. June 9, 2015. Retrieved February 24, 2016.
  45. ^ Bashshur, Ramona (February 2013). . American Bar Association. Archived from the original on June 21, 2018. Retrieved February 24, 2016.
  46. ^ Sifferlin, Alexandra (October 3, 2015). "Over Half of E.U. Countries Are Opting Out of GMOs". Time.
  47. ^ Lynch, Diahanna; Vogel, David (April 5, 2001). . Council on Foreign Relations. Archived from the original on September 29, 2016. Retrieved February 24, 2016.
  48. ^ Cowan, Tadlock (18 Jun 2011). "Agricultural Biotechnology: Background and Recent Issues" (PDF). Congressional Research Service (Library of Congress). pp. 33–38. Retrieved 27 September 2015.
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External links edit

  • Ministry for the Environment NZ – Report of the Royal Commission on Genetic Modification, 2001 2010-06-02 at the Wayback Machine

plant, genetics, this, article, needs, additional, citations, verification, relevant, discussion, found, talk, page, please, help, improve, this, article, adding, citations, reliable, sources, this, article, unsourced, material, challenged, removed, find, sour. This article needs additional citations for verification Relevant discussion may be found on the talk page Please help improve this article by adding citations to reliable sources in this article Unsourced material may be challenged and removed Find sources Plant genetics news newspapers books scholar JSTOR June 2018 Learn how and when to remove this template message Plant genetics is the study of genes genetic variation and heredity specifically in plants 1 2 It is generally considered a field of biology and botany but intersects frequently with many other life sciences and is strongly linked with the study of information systems Plant genetics is similar in many ways to animal genetics but differs in a few key areas An image of multiple chromosomes taken from many cellsThe discoverer of genetics was Gregor Mendel a late 19th century scientist and Augustinian friar Mendel studied trait inheritance patterns in the way traits are handed down from parents to offspring He observed that organisms most famously pea plants inherit traits by way of discrete units of inheritance This term still used today is a somewhat ambiguous definition of what is referred to as a gene Much of Mendel s work with plants still forms the basis for modern plant genetics Plants like all known organisms use DNA to pass on their traits Animal genetics often focuses on parentage and lineage but this can sometimes be difficult in plant genetics due to the fact that plants can unlike most animals be self fertile Speciation can be easier in many plants due to unique genetic abilities such as being well adapted to polyploidy Plants are unique in that they are able to produce energy dense carbohydrates via photosynthesis a process which is achieved by use of chloroplasts Chloroplasts like the superficially similar mitochondria possess their own DNA Chloroplasts thus provide an additional reservoir for genes and genetic diversity and an extra layer of genetic complexity not found in animals The study of plant genetics has major economic impacts many staple crops are genetically modified to increase yields confer pest and disease resistance provide resistance to herbicides or to increase their nutritional value Contents 1 History 2 DNA 3 Meiosis 4 Plant Specific Genetics 4 1 Model organisms 4 1 1 Arabidopsis thaliana 4 1 2 Brachypodium distachyon 4 1 3 Nicotiana benthamiana 4 1 4 Other model plants 5 Genetically modified crops 6 Modern ways to genetically modify plants 6 1 Gene gun method 6 2 Agrobacterium method 7 See also 8 References 9 External linksHistory editSee also History of geneticsThis section needs expansion You can help by adding to it June 2018 The earliest evidence of plant domestication found has been dated to 11 000 years before present in ancestral wheat While initially selection may have happened unintentionally it is very likely that by 5 000 years ago farmers had a basic understanding of heredity and inheritance the foundation of genetics 3 This selection over time gave rise to new crop species and varieties that are the basis of the crops we grow eat and research today nbsp Gregor Mendel the Father of genetics The field of plant genetics began with the work of Gregor Johann Mendel who is often called the father of genetics He was an Augustinian priest and scientist born on 20 July 1822 in Austria Hungary He worked at the Abbey of St Thomas in Brunn now Brno Czech Republic where his organism of choice for studying inheritance and traits was the pea plant Mendel s work tracked many phenotypic traits of pea plants such as their height flower color and seed characteristics Mendel showed that the inheritance of these traits follows two particular laws which were later named after him His seminal work on genetics Versuche uber Pflanzen Hybriden Experiments on Plant Hybrids was published in 1866 but went almost entirely unnoticed until 1900 when prominent botanists in the UK like Sir Gavin de Beer recognized its importance and re published an English translation 4 Mendel died in 1884 The significance of Mendel s work was not recognized until the turn of the 20th century Its rediscovery prompted the foundation of modern genetics His discoveries deduction of segregation ratios and subsequent laws have not only been used in research to gain a better understanding of plant genetics but also play a large role in plant breeding 3 Mendel s works along with the works of Charles Darwin and Alfred Wallace on selection provided the basis for much of genetics as a discipline In the early 1900s botanists and statisticians began to examine the segregation ratios put forth by Mendel W E Castle discovered that while individual traits may segregate and change over time with selection that when selection is stopped and environmental effects are taken into account the genetic ratio stops changing and reach a sort of stasis the foundation of Population Genetics 5 This was independently discovered by G H Hardy and W Weinberg which ultimately gave rise to the concept of Hardy Weinberg equilibrium published in 1908 6 For a more thorough exploration of the history of population genetics see History of Population Genetics by Bob Allard Around this same time genetic and plant breeding experiments in maize began Maize that has been self pollinated experiences a phenomenon called inbreeding depression Researchers like Nils Heribert Nilsson recognized that by crossing plants and forming hybrids they were not only able to combine traits from two desirable parents but the crop also experienced heterosis or hybrid vigor This was the beginning of identifying gene interactions or epistasis By the early 1920s Donald Forsha Jones had invented a method that led to the first hybrid maize seed that were available commercially 7 The large demand for hybrid seed in the U S Corn Belt by the mid 1930s led to a rapid growth in the seed production industry and ultimately seed research The strict requirements for producing hybrid seed led to the development of careful population and inbred line maintenance keeping plants isolated and unable to out cross which produced plants that better allowed researchers to tease out different genetic concepts The structure of these populations allowed scientist such a T Dobzhansky S Wright and R A Fisher to develop evolutionary biology concepts as well as explore speciation over time and the statistics underlying plant genetics 8 9 10 Their work laid the foundations for future genetic discoveries such as linkage disequilibrium in 1960 11 While breeding experiments were taking place other scientists such as Nikolai Vavilov 12 and Charles M Rick were interested in wild progenitor species of modern crop plants Botanists between the 1920s and 1960s often would travel to regions of high plant diversity and seek out wild species that had given rise to domesticated species after selection Determining how crops changed over time with selection was initially based on morphological features It developed over time to chromosomal analysis then genetic marker analysis and eventual genomic analysis Identifying traits and their underlying genetics allowed for transferring useful genes and the traits they controlled from either wild or mutant plants to crop plants Understanding and manipulating of plant genetics was in its heyday during the Green Revolution brought about by Norman Borlaug During this time the molecule of heredity DNA was also discovered which allowed scientists to actually examine and manipulate genetic information directly DNA edit nbsp The structure of part of a DNA double helixDeoxyribonucleic acid DNA is a nucleic acid that contains the genetic instructions used in the development and functioning of all known living organisms and some viruses The main role of DNA molecules is the long term storage of information DNA is often compared to a set of blueprints or a recipe or a code since it contains the instructions needed to construct other components of cells such as proteins and RNA molecules The DNA segments that carry this genetic information are called genes and their location within the genome are referred to as genetic loci but other DNA sequences have structural purposes or are involved in regulating the use of this genetic information Geneticists including plant geneticists use this sequence of DNA to their advantage to better find and understand the role of different genes within a given genome Through research and plant breeding manipulation of different plant genes and loci encoded by the DNA sequence of the plant chromosomes by various methods can be done to produce different or desired genotypes that result in different or desired phenotypes 13 Meiosis editDuring plant meiosis double strand breaks are introduced into the DNA genome and these breaks can be repaired by a recombination process employing gene products RAD51 and DMC1 that are homologous to recombinases employed by eukaryotes generally 14 Central elements of eukaryotic meiosis are pairing of homologous chromosomes double strand break formation and homologous recombinational repair 15 These processes appear to be optimized for repairing DNA damage in the germline 15 Plant Specific Genetics editPlants like all other known living organisms pass on their traits using DNA Plants however are unique from other living organisms in the fact that they have chloroplasts Like mitochondria chloroplasts have their own DNA Like animals plants experience somatic mutations regularly but these mutations can contribute to the germ line with ease since flowers develop at the ends of branches composed of somatic cells People have known of this for centuries and mutant branches are called sports If the fruit on the sport is economically desirable a new cultivar may be obtained Some plant species are capable of self fertilization and some are nearly exclusively self fertilizers This means that a plant can be both mother and father to its offspring a rare occurrence in animals Scientists and hobbyists attempting to make crosses between different plants must take special measures to prevent the plants from self fertilizing In plant breeding people create hybrids between plant species for economic and aesthetic reasons For example the yield of Corn has increased nearly five fold in the past century due in part to the discovery and proliferation of hybrid corn varieties 16 Plant genetics can be used to predict which combination of plants may produce a plant with Hybrid vigor or conversely many discoveries in Plant genetics have come from studying the effects of hybridization Plants are generally more capable of surviving and indeed flourishing as polyploids Polyploid organisms have more than two sets of homologous chromosomes For example humans have two sets of homologous chromosomes meaning that a typical human will have 2 copies each of 23 different chromosomes for a total of 46 Wheat on the other hand while having only 7 distinct chromosomes is considered a hexaploid and has 6 copies of each chromosome for a total of 42 17 In animals inheritable germline polyploidy is less common and spontaneous chromosome increases may not even survive past fertilization In plants however this is less of a problem Polyploid individuals are created frequently by a variety of processes however once created they usually cannot cross back to the parental type Polyploid individuals that are capable of self fertilizing can give rise to a new genetically distinct lineage which can be the start of a new species This is often called instant speciation Polyploids generally have larger fruit an economically desirable trait and many human food crops including wheat maize potatoes peanuts 18 strawberries and tobacco are either accidentally or deliberately created polyploids nbsp Arabidopsis thaliana growing from between a crack in a sidewalk it is considered a key model organism in plant genetics Model organisms edit This section needs expansion You can help by adding to it June 2018 Arabidopsis thaliana edit Main article History of research on Arabidopsis thaliana Arabidopsis thaliana also known as thale cress has been the model organism for the study of plant genetics As Drosophila a species of fruit fly was to the understanding of early genetics so has been A thaliana to the understanding of plant genetics It was the first plant to ever have its genome sequenced in the year 2000 It has a small genome making the initial sequencing more attainable It has a genome size of 125 Mbp that encodes about 25 000 genes 19 Because an incredible amount of research has been done on the plant a database called The Arabidopsis Information Resource TAIR has been established as a repository for multiple data sets and information on the species Information housed in TAIR include the complete genome sequence along with gene structure gene product information gene expression DNA and seed stocks genome maps genetic and physical markers publications and information about the A thaliana research community 20 Many natural inbred accessions of A thaliana often referred to as ecotypes are available and have been useful in genetic research This natural variation has been used to identify loci important in both biotic and abiotic stress resistance 21 Brachypodium distachyon edit Brachypodium distachyon is an experimental model grass that has many attributes that make it an excellent model for temperate cereals Unlike wheat a tetra or hexaploid species brachypodium is diploid with a relatively small genome 355 Mbp with a short life cycle making genomic studies on it simpler Nicotiana benthamiana edit Nicotiana benthamiana is a popular model organism for both plant pathogen and transgenic studies Because its broad leaves are easily transiently transformed with Agrobacterium tumefaciens it is used to study both the expression of pathogen genes introduced into a plant or test new genetic cassette effects Other model plants edit Other models include the alga Chlamydomonas reinhardtii the moss Physcomitrella patens the clover Medicago truncatula Antirrhinum majus snapdragon the C4 grass Setaria viridis and maize corn Genetically modified crops editMain article Genetically modified food Genetically modified GM foods are produced from organisms that have had changes introduced into their DNA using the methods of genetic engineering Genetic engineering techniques allow for the introduction of new traits as well as greater control over traits than previous methods such as selective breeding and mutation breeding 22 Genetically modifying plants is an important economic activity in 2017 89 of corn 94 of soybeans and 91 of cotton produced in the US were from genetically modified strains 23 Since the introduction of GM crops yields have increased by 22 and profits have increased to farmers especially in the developing world by 68 An important side effect of GM crops has been decreased land requirements 24 Commercial sale of genetically modified foods began in 1994 when Calgene first marketed its unsuccessful Flavr Savr delayed ripening tomato 25 26 Most food modifications have primarily focused on cash crops in high demand by farmers such as soybean corn canola and cotton Genetically modified crops have been engineered for resistance to pathogens and herbicides and for better nutrient profiles 27 Other such crops include the economically important GM papaya which are resistant to the highly destructive Papaya ringspot virus and the nutritionally improved golden rice it is however still in development 28 There is a scientific consensus 29 30 31 32 that currently available food derived from GM crops poses no greater risk to human health than conventional food 33 34 35 36 37 but that each GM food needs to be tested on a case by case basis before introduction 38 39 Nonetheless members of the public are much less likely than scientists to perceive GM foods as safe 40 41 42 43 The legal and regulatory status of GM foods varies by country with some nations banning or restricting them and others permitting them with widely differing degrees of regulation 44 45 46 47 There are still ongoing public concerns related to food safety regulation labeling environmental impact research methods and the fact that some GM seeds are subject to intellectual property rights owned by corporations 48 Modern ways to genetically modify plants editGenetic modification has been the cause for much research into modern plant genetics and has also led to the sequencing of many plant genomes Today there are two predominant procedures of transforming genes in organisms the Gene gun method and the Agrobacterium method Gene gun method edit The gene gun method is also referred to as biolistics ballistics using biological components This technique is used for in vivo within a living organism transformation and has been especially useful in monocot species like corn and rice This approach literally shoots genes into plant cells and plant cell chloroplasts DNA is coated onto small particles of gold or tungsten approximately two micrometers in diameter The particles are placed in a vacuum chamber and the plant tissue to be engineered is placed below the chamber The particles are propelled at high velocity using a short pulse of high pressure helium gas and hit a fine mesh baffle placed above the tissue while the DNA coating continues into any target cell or tissue Agrobacterium method edit Transformation via Agrobacterium has been successfully practiced in dicots i e broadleaf plants such as soybeans and tomatoes for many years Recently it has been adapted and is now effective in monocots like grasses including corn and rice In general the Agrobacterium method is considered preferable to the gene gun because of a greater frequency of single site insertions of the foreign DNA which allows for easier monitoring In this method the tumor inducing Ti region is removed from the T DNA transfer DNA and replaced with the desired gene and a marker which is then inserted into the organism This may involve direct inoculation of the tissue with a culture of transformed Agrobacterium or inoculation following treatment with micro projectile bombardment which wounds the tissue 49 Wounding of the target tissue causes the release of phenolic compounds by the plant which induces invasion of the tissue by Agrobacterium Because of this microprojectile bombardment often increases the efficiency of infection with Agrobacterium The marker is used to find the organism which has successfully taken up the desired gene Tissues of the organism are then transferred to a medium containing an antibiotic or herbicide depending on which marker was used The Agrobacterium present is also killed by the antibiotic Only tissues expressing the marker will survive and possess the gene of interest Thus subsequent steps in the process will only use these surviving plants In order to obtain whole plants from these tissues they are grown under controlled environmental conditions in tissue culture This is a process of a series of media each containing nutrients and hormones Once the plants are grown and produce seed the process of evaluating the progeny begins This process entails selection of the seeds with the desired traits and then retesting and growing to make sure that the entire process has been completed successfully with the desired results See also editApomixis Biological engineering Biotechnology Cloning DuPont Eugenics Experimental evolution Gene flow Gene pool Genetic erosion Genetic pollution Genetically modified organisms Human genetic engineering Ice minus bacteria List of emerging technologies Marker assisted selection Monsanto Company Paratransgenesis Recombinant DNA Research ethics Synthetic biology TransgeneReferences edit Griffiths Anthony J F Miller Jeffrey H Suzuki David T Lewontin Richard C Gelbart eds 2000 Genetics and the Organism Introduction An Introduction to Genetic 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University in St Louis The Source 2016 06 02 Retrieved 2018 06 21 Nicolia Alessandro Manzo Alberto Veronesi Fabio Rosellini Daniele 2013 An overview of the last 10 years of genetically engineered crop safety research PDF Critical Reviews in Biotechnology 34 1 77 88 doi 10 3109 07388551 2013 823595 PMID 24041244 S2CID 9836802 Archived from the original PDF on 2016 09 17 Retrieved 2017 03 29 State of Food and Agriculture 2003 2004 Agricultural Biotechnology Meeting the Needs of the Poor Health and environmental impacts of transgenic crops Food and Agriculture Organization of the United Nations Retrieved February 8 2016 Ronald Pamela May 5 2011 Plant Genetics Sustainable Agriculture and Global Food Security Genetics 188 1 11 20 doi 10 1534 genetics 111 128553 PMC 3120150 PMID 21546547 But see also Domingo Jose L Bordonaba Jordi Gine 2011 A literature review on the safety assessment of genetically modified plants PDF Environment International 37 4 734 742 doi 10 1016 j envint 2011 01 003 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Crops Past Experience Future Prospects 2016 Genetically Engineered Crops Experiences and Prospects The National Academies of Sciences Engineering and Medicine US p 149 doi 10 17226 23395 ISBN 978 0 309 43738 7 PMID 28230933 Retrieved May 19 2016 Frequently asked questions on genetically modified foods World Health Organization Retrieved February 8 2016 Haslberger Alexander G 2003 Codex guidelines for GM foods include the analysis of unintended effects Nature Biotechnology 21 7 739 741 doi 10 1038 nbt0703 739 PMID 12833088 S2CID 2533628 Funk Cary Rainie Lee January 29 2015 Public and Scientists Views on Science and Society Pew Research Center Retrieved February 24 2016 Marris Claire 2001 Public views on GMOs deconstructing the myths EMBO Reports 2 7 545 548 doi 10 1093 embo reports kve142 PMC 1083956 PMID 11463731 Final Report of the PABE research project December 2001 Public Perceptions of Agricultural Biotechnologies in Europe Commission of European Communities Retrieved February 24 2016 Scott Sydney E Inbar Yoel Rozin Paul 2016 Evidence for Absolute Moral Opposition to Genetically Modified Food in the United States PDF Perspectives on Psychological Science 11 3 315 324 doi 10 1177 1745691615621275 PMID 27217243 S2CID 261060 Restrictions on Genetically Modified Organisms Library of Congress June 9 2015 Retrieved February 24 2016 Bashshur Ramona February 2013 FDA and Regulation of GMOs American Bar Association Archived from the original on June 21 2018 Retrieved February 24 2016 Sifferlin Alexandra October 3 2015 Over Half of E U Countries Are Opting Out of GMOs Time Lynch Diahanna Vogel David April 5 2001 The Regulation of GMOs in Europe and the United States A Case Study of Contemporary European Regulatory Politics Council on Foreign Relations Archived from the original on September 29 2016 Retrieved February 24 2016 Cowan Tadlock 18 Jun 2011 Agricultural Biotechnology Background and Recent Issues PDF Congressional Research Service Library of Congress pp 33 38 Retrieved 27 September 2015 Bidney D Scelonge C Martich J Burrus M Sims L Huffman G January 1992 Microprojectile bombardment of plant tissues increases transformation frequency by Agrobacterium tumefaciens Plant Mol Biol 18 2 301 13 doi 10 1007 bf00034957 PMID 1310058 S2CID 24995834 External links edit nbsp Wikimedia Commons has media related to Plant genetics Ministry for the Environment NZ Report of the Royal Commission on Genetic Modification 2001 Archived 2010 06 02 at the Wayback Machine Retrieved from https en wikipedia org w index php title Plant genetics amp oldid 1187443084, wikipedia, wiki, book, books, library,

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