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Chromosome

A chromosome is a long DNA molecule with part or all of the genetic material of an organism. In most chromosomes the very long thin DNA fibers are coated with packaging proteins; in eukaryotic cells the most important of these proteins are the histones. These proteins, aided by chaperone proteins, bind to and condense the DNA molecule to maintain its integrity.[1][2] These chromosomes display a complex three-dimensional structure, which plays a significant role in transcriptional regulation.[3]

Diagram of a replicated and condensed metaphase eukaryotic chromosome:
  1. Chromatid
  2. Centromere
  3. Short arm
  4. Long arm

Chromosomes are normally visible under a light microscope only during the metaphase of cell division (where all chromosomes are aligned in the center of the cell in their condensed form).[4] Before this happens, each chromosome is duplicated (S phase), and both copies are joined by a centromere, resulting either in an X-shaped structure (pictured above), if the centromere is located equatorially, or a two-arm structure, if the centromere is located distally. The joined copies are now called sister chromatids. During metaphase the X-shaped structure is called a metaphase chromosome, which is highly condensed and thus easiest to distinguish and study.[5] In animal cells, chromosomes reach their highest compaction level in anaphase during chromosome segregation.[6]

Chromosomal recombination during meiosis and subsequent sexual reproduction play a significant role in genetic diversity. If these structures are manipulated incorrectly, through processes known as chromosomal instability and translocation, the cell may undergo mitotic catastrophe. Usually, this will make the cell initiate apoptosis leading to its own death, but sometimes mutations in the cell hamper this process and thus cause progression of cancer.

Some use the term chromosome in a wider sense, to refer to the individualized portions of chromatin in cells, either visible or not under light microscopy. Others use the concept in a narrower sense, to refer to the individualized portions of chromatin during cell division, visible under light microscopy due to high condensation.

Etymology

The word chromosome (/ˈkrməˌsm, -ˌzm/[7][8]) comes from the Greek χρῶμα (chroma, "colour") and σῶμα (soma, "body"), describing their strong staining by particular dyes.[9] The term was coined by the German anatomist Heinrich Wilhelm Waldeyer,[10] referring to the term chromatin, which was introduced by Walther Flemming, the discoverer of cell division.

Some of the early karyological terms have become outdated.[11][12] For example, Chromatin (Flemming 1880) and Chromosom (Waldeyer 1888), both ascribe color to a non-colored state.[13]

History of discovery

 
 
Walter Sutton (left) and Theodor Boveri (right) independently developed the chromosome theory of inheritance in 1902.

The German scientists Schleiden,[5] Virchow and Bütschli were among the first scientists who recognized the structures now familiar as chromosomes.[14]

In a series of experiments beginning in the mid-1880s, Theodor Boveri gave definitive contributions to elucidating that chromosomes are the vectors of heredity, with two notions that became known as ‘chromosome continuity’ and ‘chromosome individuality’.[15]

Wilhelm Roux suggested that each chromosome carries a different genetic configuration, and Boveri was able to test and confirm this hypothesis. Aided by the rediscovery at the start of the 1900s of Gregor Mendel's earlier work, Boveri was able to point out the connection between the rules of inheritance and the behaviour of the chromosomes. Boveri influenced two generations of American cytologists: Edmund Beecher Wilson, Nettie Stevens, Walter Sutton and Theophilus Painter were all influenced by Boveri (Wilson, Stevens, and Painter actually worked with him).[16]

In his famous textbook The Cell in Development and Heredity, Wilson linked together the independent work of Boveri and Sutton (both around 1902) by naming the chromosome theory of inheritance the Boveri–Sutton chromosome theory (the names are sometimes reversed).[17] Ernst Mayr remarks that the theory was hotly contested by some famous geneticists: William Bateson, Wilhelm Johannsen, Richard Goldschmidt and T.H. Morgan, all of a rather dogmatic turn of mind. Eventually, complete proof came from chromosome maps in Morgan's own lab.[18]

The number of human chromosomes was published in 1923 by Theophilus Painter. By inspection through the microscope, he counted 24 pairs, which would mean 48 chromosomes. His error was copied by others and it was not until 1956 that the true number, 46, was determined by Indonesia-born cytogeneticist Joe Hin Tjio.[19]

Prokaryotes

The prokaryotes – bacteria and archaea – typically have a single circular chromosome, but many variations exist.[20] The chromosomes of most bacteria, which some authors prefer to call genophores, can range in size from only 130,000 base pairs in the endosymbiotic bacteria Candidatus Hodgkinia cicadicola[21] and Candidatus Tremblaya princeps,[22] to more than 14,000,000 base pairs in the soil-dwelling bacterium Sorangium cellulosum.[23] Spirochaetes of the genus Borrelia are a notable exception to this arrangement, with bacteria such as Borrelia burgdorferi, the cause of Lyme disease, containing a single linear chromosome.[24]

Structure in sequences

Prokaryotic chromosomes have less sequence-based structure than eukaryotes. Bacteria typically have a one-point (the origin of replication) from which replication starts, whereas some archaea contain multiple replication origins.[25] The genes in prokaryotes are often organized in operons, and do not usually contain introns, unlike eukaryotes.

DNA packaging

Prokaryotes do not possess nuclei. Instead, their DNA is organized into a structure called the nucleoid.[26][27] The nucleoid is a distinct structure and occupies a defined region of the bacterial cell. This structure is, however, dynamic and is maintained and remodeled by the actions of a range of histone-like proteins, which associate with the bacterial chromosome.[28] In archaea, the DNA in chromosomes is even more organized, with the DNA packaged within structures similar to eukaryotic nucleosomes.[29][30]

Certain bacteria also contain plasmids or other extrachromosomal DNA. These are circular structures in the cytoplasm that contain cellular DNA and play a role in horizontal gene transfer.[5] In prokaryotes (see nucleoids) and viruses,[31] the DNA is often densely packed and organized; in the case of archaea, by homology to eukaryotic histones, and in the case of bacteria, by histone-like proteins.

Bacterial chromosomes tend to be tethered to the plasma membrane of the bacteria. In molecular biology application, this allows for its isolation from plasmid DNA by centrifugation of lysed bacteria and pelleting of the membranes (and the attached DNA).

Prokaryotic chromosomes and plasmids are, like eukaryotic DNA, generally supercoiled. The DNA must first be released into its relaxed state for access for transcription, regulation, and replication.

Eukaryotes

 
Organization of DNA in a eukaryotic cell

Each eukaryotic chromosome consists of a long linear DNA molecule associated with proteins, forming a compact complex of proteins and DNA called chromatin. Chromatin contains the vast majority of the DNA of an organism, but a small amount inherited maternally, can be found in the mitochondria. It is present in most cells, with a few exceptions, for example, red blood cells.

Histones are responsible for the first and most basic unit of chromosome organization, the nucleosome.

Eukaryotes (cells with nuclei such as those found in plants, fungi, and animals) possess multiple large linear chromosomes contained in the cell's nucleus. Each chromosome has one centromere, with one or two arms projecting from the centromere, although, under most circumstances, these arms are not visible as such. In addition, most eukaryotes have a small circular mitochondrial genome, and some eukaryotes may have additional small circular or linear cytoplasmic chromosomes.

 
The major structures in DNA compaction: DNA, the nucleosome, the 10 nm "beads-on-a-string" fibre, the 30 nm fibre and the metaphase chromosome.

In the nuclear chromosomes of eukaryotes, the uncondensed DNA exists in a semi-ordered structure, where it is wrapped around histones (structural proteins), forming a composite material called chromatin.

Interphase chromatin

The packaging of DNA into nucleosomes causes a 10 nanometer fibre which may further condense up to 30 nm fibres[32] Most of the euchromatin in interphase nuclei appears to be in the form of 30-nm fibers.[32] Chromatin structure is the more decondensed state, i.e. the 10-nm conformation allows transcription.[32]

 
Heterochromatin vs. euchromatin

During interphase (the period of the cell cycle where the cell is not dividing), two types of chromatin can be distinguished:

  • Euchromatin, which consists of DNA that is active, e.g., being expressed as protein.
  • Heterochromatin, which consists of mostly inactive DNA. It seems to serve structural purposes during the chromosomal stages. Heterochromatin can be further distinguished into two types:
    • Constitutive heterochromatin, which is never expressed. It is located around the centromere and usually contains repetitive sequences.
    • Facultative heterochromatin, which is sometimes expressed.

Metaphase chromatin and division

 
Human chromosomes during metaphase
 
Stages of early mitosis in a vertebrate cell with micrographs of chromatids

In the early stages of mitosis or meiosis (cell division), the chromatin double helix become more and more condensed. They cease to function as accessible genetic material (transcription stops) and become a compact transportable form. The loops of 30-nm chromatin fibers are thought to fold upon themselves further to form the compact metaphase chromosomes of mitotic cells. The DNA is thus condensed about 10,000 fold.[32]

The chromosome scaffold, which is made of proteins such as condensin, TOP2A and KIF4,[33] plays an important role in holding the chromatin into compact chromosomes. Loops of 30 nm structure further condense with scaffold into higher order structures.[34]

This highly compact form makes the individual chromosomes visible, and they form the classic four-arm structure, a pair of sister chromatids attached to each other at the centromere. The shorter arms are called p arms (from the French petit, small) and the longer arms are called q arms (q follows p in the Latin alphabet; q-g "grande"; alternatively it is sometimes said q is short for queue meaning tail in French[35]). This is the only natural context in which individual chromosomes are visible with an optical microscope.

Mitotic metaphase chromosomes are best described by a linearly organized longitudinally compressed array of consecutive chromatin loops.[36]

During mitosis, microtubules grow from centrosomes located at opposite ends of the cell and also attach to the centromere at specialized structures called kinetochores, one of which is present on each sister chromatid. A special DNA base sequence in the region of the kinetochores provides, along with special proteins, longer-lasting attachment in this region. The microtubules then pull the chromatids apart toward the centrosomes, so that each daughter cell inherits one set of chromatids. Once the cells have divided, the chromatids are uncoiled and DNA can again be transcribed. In spite of their appearance, chromosomes are structurally highly condensed, which enables these giant DNA structures to be contained within a cell nucleus.

Human chromosomes

Chromosomes in humans can be divided into two types: autosomes (body chromosome(s)) and allosome (sex chromosome(s)). Certain genetic traits are linked to a person's sex and are passed on through the sex chromosomes. The autosomes contain the rest of the genetic hereditary information. All act in the same way during cell division. Human cells have 23 pairs of chromosomes (22 pairs of autosomes and one pair of sex chromosomes), giving a total of 46 per cell. In addition to these, human cells have many hundreds of copies of the mitochondrial genome. Sequencing of the human genome has provided a great deal of information about each of the chromosomes. Below is a table compiling statistics for the chromosomes, based on the Sanger Institute's human genome information in the Vertebrate Genome Annotation (VEGA) database.[37] Number of genes is an estimate, as it is in part based on gene predictions. Total chromosome length is an estimate as well, based on the estimated size of unsequenced heterochromatin regions.

Chromosome Genes[38] Total base pairs % of bases Sequenced base pairs[39] % sequenced base pairs
1 2000 247,199,719 8.0 224,999,719 91.02%
2 1300 242,751,149 7.9 237,712,649 97.92%
3 1000 199,446,827 6.5 194,704,827 97.62%
4 1000 191,263,063 6.2 187,297,063 97.93%
5 900 180,837,866 5.9 177,702,766 98.27%
6 1000 170,896,993 5.5 167,273,993 97.88%
7 900 158,821,424 5.2 154,952,424 97.56%
8 700 146,274,826 4.7 142,612,826 97.50%
9 800 140,442,298 4.6 120,312,298 85.67%
10 700 135,374,737 4.4 131,624,737 97.23%
11 1300 134,452,384 4.4 131,130,853 97.53%
12 1100 132,289,534 4.3 130,303,534 98.50%
13 300 114,127,980 3.7 95,559,980 83.73%
14 800 106,360,585 3.5 88,290,585 83.01%
15 600 100,338,915 3.3 81,341,915 81.07%
16 800 88,822,254 2.9 78,884,754 88.81%
17 1200 78,654,742 2.6 77,800,220 98.91%
18 200 76,117,153 2.5 74,656,155 98.08%
19 1500 63,806,651 2.1 55,785,651 87.43%
20 500 62,435,965 2.0 59,505,254 95.31%
21 200 46,944,323 1.5 34,171,998 72.79%
22 500 49,528,953 1.6 34,893,953 70.45%
X (sex chromosome) 800 154,913,754 5.0 151,058,754 97.51%
Y (sex chromosome) 200[40] 57,741,652 1.9 25,121,652 43.51%
Total 21,000 3,079,843,747 100.0 2,857,698,560 92.79%

Based on the micrographic characteristics of size, position of the centromere and sometimes the presence of a chromosomal satellite, the human chromosomes are classified into the following groups:[41]

Group Chromosomes Features
A 1-3 Large, metacentric or submetacentric
B 4-5 Large, submetacentric
C 6-12, X Medium-sized, submetacentric
D 13-15 Medium-sized, acrocentric, with satellite
E 16-18 Small, metacentric or submetacentric
F 19-20 Very small, metacentric
G 21-22, Y Very small, acrocentric (and 21, 22 with satellite)

Karyotype

 
Karyogram of a human male
 
Schematic karyogram of a human, with annotated bands and sub-bands. It is a graphical representation of the idealized human diploid karyotype. It shows dark and white regions on G banding. Each row is vertically aligned at centromere level. It shows 22 homologous chromosomes, both the female (XX) and male (XY) versions of the sex chromosome (bottom right), as well as the mitochondrial genome (at bottom left).

In general, the karyotype is the characteristic chromosome complement of a eukaryote species.[42] The preparation and study of karyotypes is part of cytogenetics.

Although the replication and transcription of DNA is highly standardized in eukaryotes, the same cannot be said for their karyotypes, which are often highly variable. There may be variation between species in chromosome number and in detailed organization. In some cases, there is significant variation within species. Often there is:

1. variation between the two sexes
2. variation between the germ-line and soma (between gametes and the rest of the body)
3. variation between members of a population, due to balanced genetic polymorphism
4. geographical variation between races
5. mosaics or otherwise abnormal individuals.

Also, variation in karyotype may occur during development from the fertilized egg.

The technique of determining the karyotype is usually called karyotyping. Cells can be locked part-way through division (in metaphase) in vitro (in a reaction vial) with colchicine. These cells are then stained, photographed, and arranged into a karyogram, with the set of chromosomes arranged, autosomes in order of length, and sex chromosomes (here X/Y) at the end.

Like many sexually reproducing species, humans have special gonosomes (sex chromosomes, in contrast to autosomes). These are XX in females and XY in males.

History and analysis techniques

Investigation into the human karyotype took many years to settle the most basic question: How many chromosomes does a normal diploid human cell contain? In 1912, Hans von Winiwarter reported 47 chromosomes in spermatogonia and 48 in oogonia, concluding an XX/XO sex determination mechanism.[43] Painter in 1922 was not certain whether the diploid number of man is 46 or 48, at first favouring 46.[44] He revised his opinion later from 46 to 48, and he correctly insisted on humans having an XX/XY system.[45]

New techniques were needed to definitively solve the problem:

  1. Using cells in culture
  2. Arresting mitosis in metaphase by a solution of colchicine
  3. Pretreating cells in a hypotonic solution 0.075 M KCl, which swells them and spreads the chromosomes
  4. Squashing the preparation on the slide forcing the chromosomes into a single plane
  5. Cutting up a photomicrograph and arranging the result into an indisputable karyogram.

It took until 1954 before the human diploid number was confirmed as 46.[46][47] Considering the techniques of Winiwarter and Painter, their results were quite remarkable.[48] Chimpanzees, the closest living relatives to modern humans, have 48 chromosomes as do the other great apes: in humans two chromosomes fused to form chromosome 2.

Aberrations

 
In Down syndrome, there are three copies of chromosome 21.

Chromosomal aberrations are disruptions in the normal chromosomal content of a cell and are a major cause of genetic conditions in humans,[49] such as Down syndrome, although most aberrations have little to no effect. Some chromosome abnormalities do not cause disease in carriers, such as translocations, or chromosomal inversions, although they may lead to a higher chance of bearing a child with a chromosome disorder. Abnormal numbers of chromosomes or chromosome sets, called aneuploidy, may be lethal or may give rise to genetic disorders.[50] Genetic counseling is offered for families that may carry a chromosome rearrangement.

The gain or loss of DNA from chromosomes can lead to a variety of genetic disorders.[51] Human examples include:

  • Cri du chat, which is caused by the deletion of part of the short arm of chromosome 5. "Cri du chat" means "cry of the cat" in French; the condition was so-named because affected babies make high-pitched cries that sound like those of a cat. Affected individuals have wide-set eyes, a small head and jaw, moderate to severe mental health problems, and are very short.
  • Down syndrome, the most common trisomy, usually caused by an extra copy of chromosome 21 (trisomy 21). Characteristics include decreased muscle tone, stockier build, asymmetrical skull, slanting eyes and mild to moderate developmental disability.[52]
  • Edwards syndrome, or trisomy-18, the second most common trisomy.[53] Symptoms include motor retardation, developmental disability and numerous congenital anomalies causing serious health problems. Ninety percent of those affected die in infancy. They have characteristic clenched hands and overlapping fingers.
  • Isodicentric 15, also called idic(15), partial tetrasomy 15q, or inverted duplication 15 (inv dup 15).
  • Jacobsen syndrome, which is very rare. It is also called the terminal 11q deletion disorder.[54] Those affected have normal intelligence or mild developmental disability, with poor expressive language skills. Most have a bleeding disorder called Paris-Trousseau syndrome.
  • Klinefelter syndrome (XXY). Men with Klinefelter syndrome are usually sterile and tend to be taller and have longer arms and legs than their peers. Boys with the syndrome are often shy and quiet and have a higher incidence of speech delay and dyslexia. Without testosterone treatment, some may develop gynecomastia during puberty.
  • Patau Syndrome, also called D-Syndrome or trisomy-13. Symptoms are somewhat similar to those of trisomy-18, without the characteristic folded hand.
  • Small supernumerary marker chromosome. This means there is an extra, abnormal chromosome. Features depend on the origin of the extra genetic material. Cat-eye syndrome and isodicentric chromosome 15 syndrome (or Idic15) are both caused by a supernumerary marker chromosome, as is Pallister–Killian syndrome.
  • Triple-X syndrome (XXX). XXX girls tend to be tall and thin and have a higher incidence of dyslexia.
  • Turner syndrome (X instead of XX or XY). In Turner syndrome, female sexual characteristics are present but underdeveloped. Females with Turner syndrome often have a short stature, low hairline, abnormal eye features and bone development and a "caved-in" appearance to the chest.
  • Wolf–Hirschhorn syndrome, which is caused by partial deletion of the short arm of chromosome 4. It is characterized by growth retardation, delayed motor skills development, "Greek Helmet" facial features, and mild to profound mental health problems.
  • XYY syndrome. XYY boys are usually taller than their siblings. Like XXY boys and XXX girls, they are more likely to have learning difficulties.

Sperm aneuploidy

Exposure of males to certain lifestyle, environmental and/or occupational hazards may increase the risk of aneuploid spermatozoa.[55] In particular, risk of aneuploidy is increased by tobacco smoking,[56][57] and occupational exposure to benzene,[58] insecticides,[59][60] and perfluorinated compounds.[61] Increased aneuploidy is often associated with increased DNA damage in spermatozoa.

Number in various organisms

In eukaryotes

The number of chromosomes in eukaryotes is highly variable (see table). In fact, chromosomes can fuse or break and thus evolve into novel karyotypes. Chromosomes can also be fused artificially. For example, the 16 chromosomes of yeast have been fused into one giant chromosome and the cells were still viable with only somewhat reduced growth rates.[62]

The tables below give the total number of chromosomes (including sex chromosomes) in a cell nucleus. For example, most eukaryotes are diploid, like humans who have 22 different types of autosomes, each present as two homologous pairs, and two sex chromosomes. This gives 46 chromosomes in total. Other organisms have more than two copies of their chromosome types, such as bread wheat, which is hexaploid and has six copies of seven different chromosome types – 42 chromosomes in total.

Chromosome numbers in some plants
Plant species #
Arabidopsis thaliana (diploid)[63] 10
Rye (diploid)[64] 14
Einkorn wheat (diploid)[65] 14
Maize (diploid or palaeotetraploid)[66] 20
Durum wheat (tetraploid)[65] 28
Bread wheat (hexaploid)[65] 42
Cultivated tobacco (tetraploid)[67] 48
Adder's tongue fern (polyploid)[68] approx. 1,200
Chromosome numbers (2n) in some animals
Species #
Indian muntjac 7
Common fruit fly 8
Pill millipede (Arthrosphaera fumosa)[69] 30
Earthworm (Octodrilus complanatus)[70] 36
Tibetan fox 36
Domestic cat[71] 38
Domestic pig 38
Laboratory mouse[72][73] 40
Laboratory rat[73] 42
Rabbit (Oryctolagus cuniculus)[74] 44
Syrian hamster[72] 44
Guppy (poecilia reticulata)[75] 46
Human[76] 46
Hares[77][78] 48
Gorillas, chimpanzees[76] 48
Domestic sheep 54
Garden snail[79] 54
Silkworm[80] 56
Elephant[81] 56
Cow 60
Donkey 62
Guinea pig[82] 64
Horse 64
Dog[83] 78
Hedgehog 90
Goldfish[84] 100–104
Kingfisher[85] 132
Chromosome numbers in other organisms
Species Large
chromosomes
Intermediate
chromosomes
Microchromosomes
Trypanosoma brucei 11 6 ≈100
Domestic pigeon
(Columba livia domestica)[86]
18 59–63
Chicken[87] 8 2 sex chromosomes 60

Normal members of a particular eukaryotic species all have the same number of nuclear chromosomes (see the table). Other eukaryotic chromosomes, i.e., mitochondrial and plasmid-like small chromosomes, are much more variable in number, and there may be thousands of copies per cell.

 
The 23 human chromosome territories during prometaphase in fibroblast cells

Asexually reproducing species have one set of chromosomes that are the same in all body cells. However, asexual species can be either haploid or diploid.

Sexually reproducing species have somatic cells (body cells), which are diploid [2n] having two sets of chromosomes (23 pairs in humans), one set from the mother and one from the father. Gametes, reproductive cells, are haploid [n]: They have one set of chromosomes. Gametes are produced by meiosis of a diploid germ line cell. During meiosis, the matching chromosomes of father and mother can exchange small parts of themselves (crossover), and thus create new chromosomes that are not inherited solely from either parent. When a male and a female gamete merge (fertilization), a new diploid organism is formed.

Some animal and plant species are polyploid [Xn]: They have more than two sets of homologous chromosomes. Plants important in agriculture such as tobacco or wheat are often polyploid, compared to their ancestral species. Wheat has a haploid number of seven chromosomes, still seen in some cultivars as well as the wild progenitors. The more-common pasta and bread wheat types are polyploid, having 28 (tetraploid) and 42 (hexaploid) chromosomes, compared to the 14 (diploid) chromosomes in the wild wheat.[88]

In prokaryotes

Prokaryote species generally have one copy of each major chromosome, but most cells can easily survive with multiple copies.[89] For example, Buchnera, a symbiont of aphids has multiple copies of its chromosome, ranging from 10–400 copies per cell.[90] However, in some large bacteria, such as Epulopiscium fishelsoni up to 100,000 copies of the chromosome can be present.[91] Plasmids and plasmid-like small chromosomes are, as in eukaryotes, highly variable in copy number. The number of plasmids in the cell is almost entirely determined by the rate of division of the plasmid – fast division causes high copy number.

See also

Notes and references

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External links

  • from HOPES: Huntington's Outreach Project for Education at Stanford
  • Chromosome Abnormalities at AtlasGeneticsOncology
  • On-line exhibition on chromosomes and genome (SIB)
  • , from the University of Utah's Genetic Science Learning Center
  • Try making a karyotype yourself, from the University of Utah's Genetic Science Learning Center
  • Kimballs Chromosome pages
  • Chromosome News from Genome News Network
  • , European network for Rare Chromosome Disorders on the Internet
  • Ensembl.org, Ensembl project, presenting chromosomes, their genes and syntenic loci graphically via the web
  • Genographic Project 12 July 2007 at the Wayback Machine
  • Home reference on Chromosomes from the U.S. National Library of Medicine
  • and comparison to other species
  • Unique – The Rare Chromosome Disorder Support Group Support for people with rare chromosome disorders

chromosome, this, article, about, molecule, genetic, algorithm, genetic, algorithm, chromosome, long, molecule, with, part, genetic, material, organism, most, chromosomes, very, long, thin, fibers, coated, with, packaging, proteins, eukaryotic, cells, most, im. This article is about the DNA molecule For the genetic algorithm see Chromosome genetic algorithm A chromosome is a long DNA molecule with part or all of the genetic material of an organism In most chromosomes the very long thin DNA fibers are coated with packaging proteins in eukaryotic cells the most important of these proteins are the histones These proteins aided by chaperone proteins bind to and condense the DNA molecule to maintain its integrity 1 2 These chromosomes display a complex three dimensional structure which plays a significant role in transcriptional regulation 3 Diagram of a replicated and condensed metaphase eukaryotic chromosome ChromatidCentromereShort armLong arm Chromosomes are normally visible under a light microscope only during the metaphase of cell division where all chromosomes are aligned in the center of the cell in their condensed form 4 Before this happens each chromosome is duplicated S phase and both copies are joined by a centromere resulting either in an X shaped structure pictured above if the centromere is located equatorially or a two arm structure if the centromere is located distally The joined copies are now called sister chromatids During metaphase the X shaped structure is called a metaphase chromosome which is highly condensed and thus easiest to distinguish and study 5 In animal cells chromosomes reach their highest compaction level in anaphase during chromosome segregation 6 Chromosomal recombination during meiosis and subsequent sexual reproduction play a significant role in genetic diversity If these structures are manipulated incorrectly through processes known as chromosomal instability and translocation the cell may undergo mitotic catastrophe Usually this will make the cell initiate apoptosis leading to its own death but sometimes mutations in the cell hamper this process and thus cause progression of cancer Some use the term chromosome in a wider sense to refer to the individualized portions of chromatin in cells either visible or not under light microscopy Others use the concept in a narrower sense to refer to the individualized portions of chromatin during cell division visible under light microscopy due to high condensation Contents 1 Etymology 2 History of discovery 3 Prokaryotes 3 1 Structure in sequences 3 2 DNA packaging 4 Eukaryotes 4 1 Interphase chromatin 4 2 Metaphase chromatin and division 4 3 Human chromosomes 5 Karyotype 5 1 History and analysis techniques 6 Aberrations 6 1 Sperm aneuploidy 7 Number in various organisms 7 1 In eukaryotes 7 2 In prokaryotes 8 See also 9 Notes and references 10 External linksEtymology EditThe word chromosome ˈ k r oʊ m e ˌ s oʊ m ˌ z oʊ m 7 8 comes from the Greek xrῶma chroma colour and sῶma soma body describing their strong staining by particular dyes 9 The term was coined by the German anatomist Heinrich Wilhelm Waldeyer 10 referring to the term chromatin which was introduced by Walther Flemming the discoverer of cell division Some of the early karyological terms have become outdated 11 12 For example Chromatin Flemming 1880 and Chromosom Waldeyer 1888 both ascribe color to a non colored state 13 History of discovery Edit Walter Sutton left and Theodor Boveri right independently developed the chromosome theory of inheritance in 1902 The German scientists Schleiden 5 Virchow and Butschli were among the first scientists who recognized the structures now familiar as chromosomes 14 In a series of experiments beginning in the mid 1880s Theodor Boveri gave definitive contributions to elucidating that chromosomes are the vectors of heredity with two notions that became known as chromosome continuity and chromosome individuality 15 Wilhelm Roux suggested that each chromosome carries a different genetic configuration and Boveri was able to test and confirm this hypothesis Aided by the rediscovery at the start of the 1900s of Gregor Mendel s earlier work Boveri was able to point out the connection between the rules of inheritance and the behaviour of the chromosomes Boveri influenced two generations of American cytologists Edmund Beecher Wilson Nettie Stevens Walter Sutton and Theophilus Painter were all influenced by Boveri Wilson Stevens and Painter actually worked with him 16 In his famous textbook The Cell in Development and Heredity Wilson linked together the independent work of Boveri and Sutton both around 1902 by naming the chromosome theory of inheritance the Boveri Sutton chromosome theory the names are sometimes reversed 17 Ernst Mayr remarks that the theory was hotly contested by some famous geneticists William Bateson Wilhelm Johannsen Richard Goldschmidt and T H Morgan all of a rather dogmatic turn of mind Eventually complete proof came from chromosome maps in Morgan s own lab 18 The number of human chromosomes was published in 1923 by Theophilus Painter By inspection through the microscope he counted 24 pairs which would mean 48 chromosomes His error was copied by others and it was not until 1956 that the true number 46 was determined by Indonesia born cytogeneticist Joe Hin Tjio 19 Prokaryotes EditMain article Nucleoid The prokaryotes bacteria and archaea typically have a single circular chromosome but many variations exist 20 The chromosomes of most bacteria which some authors prefer to call genophores can range in size from only 130 000 base pairs in the endosymbiotic bacteria Candidatus Hodgkinia cicadicola 21 and Candidatus Tremblaya princeps 22 to more than 14 000 000 base pairs in the soil dwelling bacterium Sorangium cellulosum 23 Spirochaetes of the genus Borrelia are a notable exception to this arrangement with bacteria such as Borrelia burgdorferi the cause of Lyme disease containing a single linear chromosome 24 Structure in sequences Edit Prokaryotic chromosomes have less sequence based structure than eukaryotes Bacteria typically have a one point the origin of replication from which replication starts whereas some archaea contain multiple replication origins 25 The genes in prokaryotes are often organized in operons and do not usually contain introns unlike eukaryotes DNA packaging Edit Prokaryotes do not possess nuclei Instead their DNA is organized into a structure called the nucleoid 26 27 The nucleoid is a distinct structure and occupies a defined region of the bacterial cell This structure is however dynamic and is maintained and remodeled by the actions of a range of histone like proteins which associate with the bacterial chromosome 28 In archaea the DNA in chromosomes is even more organized with the DNA packaged within structures similar to eukaryotic nucleosomes 29 30 Certain bacteria also contain plasmids or other extrachromosomal DNA These are circular structures in the cytoplasm that contain cellular DNA and play a role in horizontal gene transfer 5 In prokaryotes see nucleoids and viruses 31 the DNA is often densely packed and organized in the case of archaea by homology to eukaryotic histones and in the case of bacteria by histone like proteins Bacterial chromosomes tend to be tethered to the plasma membrane of the bacteria In molecular biology application this allows for its isolation from plasmid DNA by centrifugation of lysed bacteria and pelleting of the membranes and the attached DNA Prokaryotic chromosomes and plasmids are like eukaryotic DNA generally supercoiled The DNA must first be released into its relaxed state for access for transcription regulation and replication Eukaryotes EditMain article Chromatin See also DNA condensation Nucleosome Histone and Protamine See also Eukaryotic chromosome fine structure Organization of DNA in a eukaryotic cell Each eukaryotic chromosome consists of a long linear DNA molecule associated with proteins forming a compact complex of proteins and DNA called chromatin Chromatin contains the vast majority of the DNA of an organism but a small amount inherited maternally can be found in the mitochondria It is present in most cells with a few exceptions for example red blood cells Histones are responsible for the first and most basic unit of chromosome organization the nucleosome Eukaryotes cells with nuclei such as those found in plants fungi and animals possess multiple large linear chromosomes contained in the cell s nucleus Each chromosome has one centromere with one or two arms projecting from the centromere although under most circumstances these arms are not visible as such In addition most eukaryotes have a small circular mitochondrial genome and some eukaryotes may have additional small circular or linear cytoplasmic chromosomes The major structures in DNA compaction DNA the nucleosome the 10 nm beads on a string fibre the 30 nm fibre and the metaphase chromosome In the nuclear chromosomes of eukaryotes the uncondensed DNA exists in a semi ordered structure where it is wrapped around histones structural proteins forming a composite material called chromatin Interphase chromatin Edit The packaging of DNA into nucleosomes causes a 10 nanometer fibre which may further condense up to 30 nm fibres 32 Most of the euchromatin in interphase nuclei appears to be in the form of 30 nm fibers 32 Chromatin structure is the more decondensed state i e the 10 nm conformation allows transcription 32 Heterochromatin vs euchromatin During interphase the period of the cell cycle where the cell is not dividing two types of chromatin can be distinguished Euchromatin which consists of DNA that is active e g being expressed as protein Heterochromatin which consists of mostly inactive DNA It seems to serve structural purposes during the chromosomal stages Heterochromatin can be further distinguished into two types Constitutive heterochromatin which is never expressed It is located around the centromere and usually contains repetitive sequences Facultative heterochromatin which is sometimes expressed Metaphase chromatin and division Edit See also mitosis and meiosis Human chromosomes during metaphase Stages of early mitosis in a vertebrate cell with micrographs of chromatids In the early stages of mitosis or meiosis cell division the chromatin double helix become more and more condensed They cease to function as accessible genetic material transcription stops and become a compact transportable form The loops of 30 nm chromatin fibers are thought to fold upon themselves further to form the compact metaphase chromosomes of mitotic cells The DNA is thus condensed about 10 000 fold 32 The chromosome scaffold which is made of proteins such as condensin TOP2A and KIF4 33 plays an important role in holding the chromatin into compact chromosomes Loops of 30 nm structure further condense with scaffold into higher order structures 34 This highly compact form makes the individual chromosomes visible and they form the classic four arm structure a pair of sister chromatids attached to each other at the centromere The shorter arms are called p arms from the French petit small and the longer arms are called q arms q follows p in the Latin alphabet q g grande alternatively it is sometimes said q is short for queue meaning tail in French 35 This is the only natural context in which individual chromosomes are visible with an optical microscope Mitotic metaphase chromosomes are best described by a linearly organized longitudinally compressed array of consecutive chromatin loops 36 During mitosis microtubules grow from centrosomes located at opposite ends of the cell and also attach to the centromere at specialized structures called kinetochores one of which is present on each sister chromatid A special DNA base sequence in the region of the kinetochores provides along with special proteins longer lasting attachment in this region The microtubules then pull the chromatids apart toward the centrosomes so that each daughter cell inherits one set of chromatids Once the cells have divided the chromatids are uncoiled and DNA can again be transcribed In spite of their appearance chromosomes are structurally highly condensed which enables these giant DNA structures to be contained within a cell nucleus Human chromosomes Edit Chromosomes in humans can be divided into two types autosomes body chromosome s and allosome sex chromosome s Certain genetic traits are linked to a person s sex and are passed on through the sex chromosomes The autosomes contain the rest of the genetic hereditary information All act in the same way during cell division Human cells have 23 pairs of chromosomes 22 pairs of autosomes and one pair of sex chromosomes giving a total of 46 per cell In addition to these human cells have many hundreds of copies of the mitochondrial genome Sequencing of the human genome has provided a great deal of information about each of the chromosomes Below is a table compiling statistics for the chromosomes based on the Sanger Institute s human genome information in the Vertebrate Genome Annotation VEGA database 37 Number of genes is an estimate as it is in part based on gene predictions Total chromosome length is an estimate as well based on the estimated size of unsequenced heterochromatin regions Chromosome Genes 38 Total base pairs of bases Sequenced base pairs 39 sequenced base pairs1 2000 247 199 719 8 0 224 999 719 91 02 2 1300 242 751 149 7 9 237 712 649 97 92 3 1000 199 446 827 6 5 194 704 827 97 62 4 1000 191 263 063 6 2 187 297 063 97 93 5 900 180 837 866 5 9 177 702 766 98 27 6 1000 170 896 993 5 5 167 273 993 97 88 7 900 158 821 424 5 2 154 952 424 97 56 8 700 146 274 826 4 7 142 612 826 97 50 9 800 140 442 298 4 6 120 312 298 85 67 10 700 135 374 737 4 4 131 624 737 97 23 11 1300 134 452 384 4 4 131 130 853 97 53 12 1100 132 289 534 4 3 130 303 534 98 50 13 300 114 127 980 3 7 95 559 980 83 73 14 800 106 360 585 3 5 88 290 585 83 01 15 600 100 338 915 3 3 81 341 915 81 07 16 800 88 822 254 2 9 78 884 754 88 81 17 1200 78 654 742 2 6 77 800 220 98 91 18 200 76 117 153 2 5 74 656 155 98 08 19 1500 63 806 651 2 1 55 785 651 87 43 20 500 62 435 965 2 0 59 505 254 95 31 21 200 46 944 323 1 5 34 171 998 72 79 22 500 49 528 953 1 6 34 893 953 70 45 X sex chromosome 800 154 913 754 5 0 151 058 754 97 51 Y sex chromosome 200 40 57 741 652 1 9 25 121 652 43 51 Total 21 000 3 079 843 747 100 0 2 857 698 560 92 79 Based on the micrographic characteristics of size position of the centromere and sometimes the presence of a chromosomal satellite the human chromosomes are classified into the following groups 41 Group Chromosomes FeaturesA 1 3 Large metacentric or submetacentricB 4 5 Large submetacentricC 6 12 X Medium sized submetacentricD 13 15 Medium sized acrocentric with satelliteE 16 18 Small metacentric or submetacentricF 19 20 Very small metacentricG 21 22 Y Very small acrocentric and 21 22 with satellite Karyotype EditMain article Karyotype Karyogram of a human male Schematic karyogram of a human with annotated bands and sub bands It is a graphical representation of the idealized human diploid karyotype It shows dark and white regions on G banding Each row is vertically aligned at centromere level It shows 22 homologous chromosomes both the female XX and male XY versions of the sex chromosome bottom right as well as the mitochondrial genome at bottom left Further information Karyotype In general the karyotype is the characteristic chromosome complement of a eukaryote species 42 The preparation and study of karyotypes is part of cytogenetics Although the replication and transcription of DNA is highly standardized in eukaryotes the same cannot be said for their karyotypes which are often highly variable There may be variation between species in chromosome number and in detailed organization In some cases there is significant variation within species Often there is 1 variation between the two sexes 2 variation between the germ line and soma between gametes and the rest of the body 3 variation between members of a population due to balanced genetic polymorphism 4 geographical variation between races 5 mosaics or otherwise abnormal individuals Also variation in karyotype may occur during development from the fertilized egg The technique of determining the karyotype is usually called karyotyping Cells can be locked part way through division in metaphase in vitro in a reaction vial with colchicine These cells are then stained photographed and arranged into a karyogram with the set of chromosomes arranged autosomes in order of length and sex chromosomes here X Y at the end Like many sexually reproducing species humans have special gonosomes sex chromosomes in contrast to autosomes These are XX in females and XY in males History and analysis techniques Edit See also Argument from authority Use in science Investigation into the human karyotype took many years to settle the most basic question How many chromosomes does a normal diploid human cell contain In 1912 Hans von Winiwarter reported 47 chromosomes in spermatogonia and 48 in oogonia concluding an XX XO sex determination mechanism 43 Painter in 1922 was not certain whether the diploid number of man is 46 or 48 at first favouring 46 44 He revised his opinion later from 46 to 48 and he correctly insisted on humans having an XX XY system 45 New techniques were needed to definitively solve the problem Using cells in culture Arresting mitosis in metaphase by a solution of colchicine Pretreating cells in a hypotonic solution 0 075 M KCl which swells them and spreads the chromosomes Squashing the preparation on the slide forcing the chromosomes into a single plane Cutting up a photomicrograph and arranging the result into an indisputable karyogram It took until 1954 before the human diploid number was confirmed as 46 46 47 Considering the techniques of Winiwarter and Painter their results were quite remarkable 48 Chimpanzees the closest living relatives to modern humans have 48 chromosomes as do the other great apes in humans two chromosomes fused to form chromosome 2 Aberrations Edit In Down syndrome there are three copies of chromosome 21 Chromosomal aberrations are disruptions in the normal chromosomal content of a cell and are a major cause of genetic conditions in humans 49 such as Down syndrome although most aberrations have little to no effect Some chromosome abnormalities do not cause disease in carriers such as translocations or chromosomal inversions although they may lead to a higher chance of bearing a child with a chromosome disorder Abnormal numbers of chromosomes or chromosome sets called aneuploidy may be lethal or may give rise to genetic disorders 50 Genetic counseling is offered for families that may carry a chromosome rearrangement The gain or loss of DNA from chromosomes can lead to a variety of genetic disorders 51 Human examples include Cri du chat which is caused by the deletion of part of the short arm of chromosome 5 Cri du chat means cry of the cat in French the condition was so named because affected babies make high pitched cries that sound like those of a cat Affected individuals have wide set eyes a small head and jaw moderate to severe mental health problems and are very short Down syndrome the most common trisomy usually caused by an extra copy of chromosome 21 trisomy 21 Characteristics include decreased muscle tone stockier build asymmetrical skull slanting eyes and mild to moderate developmental disability 52 Edwards syndrome or trisomy 18 the second most common trisomy 53 Symptoms include motor retardation developmental disability and numerous congenital anomalies causing serious health problems Ninety percent of those affected die in infancy They have characteristic clenched hands and overlapping fingers Isodicentric 15 also called idic 15 partial tetrasomy 15q or inverted duplication 15 inv dup 15 Jacobsen syndrome which is very rare It is also called the terminal 11q deletion disorder 54 Those affected have normal intelligence or mild developmental disability with poor expressive language skills Most have a bleeding disorder called Paris Trousseau syndrome Klinefelter syndrome XXY Men with Klinefelter syndrome are usually sterile and tend to be taller and have longer arms and legs than their peers Boys with the syndrome are often shy and quiet and have a higher incidence of speech delay and dyslexia Without testosterone treatment some may develop gynecomastia during puberty Patau Syndrome also called D Syndrome or trisomy 13 Symptoms are somewhat similar to those of trisomy 18 without the characteristic folded hand Small supernumerary marker chromosome This means there is an extra abnormal chromosome Features depend on the origin of the extra genetic material Cat eye syndrome and isodicentric chromosome 15 syndrome or Idic15 are both caused by a supernumerary marker chromosome as is Pallister Killian syndrome Triple X syndrome XXX XXX girls tend to be tall and thin and have a higher incidence of dyslexia Turner syndrome X instead of XX or XY In Turner syndrome female sexual characteristics are present but underdeveloped Females with Turner syndrome often have a short stature low hairline abnormal eye features and bone development and a caved in appearance to the chest Wolf Hirschhorn syndrome which is caused by partial deletion of the short arm of chromosome 4 It is characterized by growth retardation delayed motor skills development Greek Helmet facial features and mild to profound mental health problems XYY syndrome XYY boys are usually taller than their siblings Like XXY boys and XXX girls they are more likely to have learning difficulties Sperm aneuploidy Edit Exposure of males to certain lifestyle environmental and or occupational hazards may increase the risk of aneuploid spermatozoa 55 In particular risk of aneuploidy is increased by tobacco smoking 56 57 and occupational exposure to benzene 58 insecticides 59 60 and perfluorinated compounds 61 Increased aneuploidy is often associated with increased DNA damage in spermatozoa Number in various organisms EditMain article List of organisms by chromosome count In eukaryotes Edit The number of chromosomes in eukaryotes is highly variable see table In fact chromosomes can fuse or break and thus evolve into novel karyotypes Chromosomes can also be fused artificially For example the 16 chromosomes of yeast have been fused into one giant chromosome and the cells were still viable with only somewhat reduced growth rates 62 The tables below give the total number of chromosomes including sex chromosomes in a cell nucleus For example most eukaryotes are diploid like humans who have 22 different types of autosomes each present as two homologous pairs and two sex chromosomes This gives 46 chromosomes in total Other organisms have more than two copies of their chromosome types such as bread wheat which is hexaploid and has six copies of seven different chromosome types 42 chromosomes in total Chromosome numbers in some plants Plant species Arabidopsis thaliana diploid 63 10Rye diploid 64 14Einkorn wheat diploid 65 14Maize diploid or palaeotetraploid 66 20Durum wheat tetraploid 65 28Bread wheat hexaploid 65 42Cultivated tobacco tetraploid 67 48Adder s tongue fern polyploid 68 approx 1 200 Chromosome numbers 2n in some animals Species Indian muntjac 7Common fruit fly 8Pill millipede Arthrosphaera fumosa 69 30Earthworm Octodrilus complanatus 70 36Tibetan fox 36Domestic cat 71 38Domestic pig 38Laboratory mouse 72 73 40Laboratory rat 73 42Rabbit Oryctolagus cuniculus 74 44Syrian hamster 72 44Guppy poecilia reticulata 75 46Human 76 46Hares 77 78 48Gorillas chimpanzees 76 48Domestic sheep 54Garden snail 79 54Silkworm 80 56Elephant 81 56Cow 60Donkey 62Guinea pig 82 64Horse 64Dog 83 78Hedgehog 90Goldfish 84 100 104Kingfisher 85 132 Chromosome numbers in other organisms Species Largechromosomes Intermediatechromosomes MicrochromosomesTrypanosoma brucei 11 6 100Domestic pigeon Columba livia domestica 86 18 59 63Chicken 87 8 2 sex chromosomes 60Normal members of a particular eukaryotic species all have the same number of nuclear chromosomes see the table Other eukaryotic chromosomes i e mitochondrial and plasmid like small chromosomes are much more variable in number and there may be thousands of copies per cell The 23 human chromosome territories during prometaphase in fibroblast cells Asexually reproducing species have one set of chromosomes that are the same in all body cells However asexual species can be either haploid or diploid Sexually reproducing species have somatic cells body cells which are diploid 2n having two sets of chromosomes 23 pairs in humans one set from the mother and one from the father Gametes reproductive cells are haploid n They have one set of chromosomes Gametes are produced by meiosis of a diploid germ line cell During meiosis the matching chromosomes of father and mother can exchange small parts of themselves crossover and thus create new chromosomes that are not inherited solely from either parent When a male and a female gamete merge fertilization a new diploid organism is formed Some animal and plant species are polyploid Xn They have more than two sets of homologous chromosomes Plants important in agriculture such as tobacco or wheat are often polyploid compared to their ancestral species Wheat has a haploid number of seven chromosomes still seen in some cultivars as well as the wild progenitors The more common pasta and bread wheat types are polyploid having 28 tetraploid and 42 hexaploid chromosomes compared to the 14 diploid chromosomes in the wild wheat 88 In prokaryotes Edit Prokaryote species generally have one copy of each major chromosome but most cells can easily survive with multiple copies 89 For example Buchnera a symbiont of aphids has multiple copies of its chromosome ranging from 10 400 copies per cell 90 However in some large bacteria such as Epulopiscium fishelsoni up to 100 000 copies of the chromosome can be present 91 Plasmids and plasmid like small chromosomes are as in eukaryotes highly variable in copy number The number of plasmids in the cell is almost entirely determined by the rate of division of the plasmid fast division causes high copy number See also EditAneuploidy Chromomere Chromosome segregation Cohesin Condensin DNA Genetic deletion Epigenetics For information about chromosomes in genetic algorithms see chromosome genetic algorithm Genetic genealogy Genealogical DNA test Lampbrush chromosome List of number of chromosomes of various organisms Locus explains gene location nomenclature Maternal influence on sex determination Microchromosome Minichromosome Non disjunction Secondary chromosome Sex determination system XY sex determination system X chromosome X inactivation Y chromosome Y chromosomal Aaron Y chromosomal Adam ZO sex determination system ZW sex determination system XO sex determination system Temperature dependent sex determination Haplodiploid sex determination system Polytene chromosome Protamine Neochromosome Parasitic chromosomeNotes and references Edit Hammond CM Stromme CB Huang H Patel DJ Groth A 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karyotype yourself from the University of Utah s Genetic Science Learning Center Kimballs Chromosome pages Chromosome News from Genome News Network Eurochromnet European network for Rare Chromosome Disorders on the Internet Ensembl org Ensembl project presenting chromosomes their genes and syntenic loci graphically via the web Genographic Project Archived 12 July 2007 at the Wayback Machine Home reference on Chromosomes from the U S National Library of Medicine Visualisation of human chromosomes and comparison to other species Unique The Rare Chromosome Disorder Support Group Support for people with rare chromosome disorders Retrieved from https en wikipedia org w index php title Chromosome amp oldid 1128051301, wikipedia, wiki, book, books, library,

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