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Ploidy

Ploidy (/ˈplɔɪdi/) is the number of complete sets of chromosomes in a cell, and hence the number of possible alleles for autosomal and pseudoautosomal genes. Sets of chromosomes refer to the number of maternal and paternal chromosome copies, respectively, in each homologous chromosome pair, which chromosomes naturally exist as. Somatic cells, tissues, and individual organisms can be described according to the number of sets of chromosomes present (the "ploidy level"): monoploid (1 set), diploid (2 sets), triploid (3 sets), tetraploid (4 sets), pentaploid (5 sets), hexaploid (6 sets), heptaploid[2] or septaploid[3] (7 sets), etc. The generic term polyploid is often used to describe cells with three or more chromosome sets.[4][5]

A haploid set that consists of a single complete set of chromosomes (equal to the monoploid set), as shown in the picture above, must belong to a diploid species. If a haploid set consists of two sets, it must be of a tetraploid (four sets) species.[1]

Virtually all sexually reproducing organisms are made up of somatic cells that are diploid or greater, but ploidy level may vary widely between different organisms, between different tissues within the same organism, and at different stages in an organism's life cycle. Half of all known plant genera contain polyploid species, and about two-thirds of all grasses are polyploid.[6] Many animals are uniformly diploid, though polyploidy is common in invertebrates, reptiles, and amphibians. In some species, ploidy varies between individuals of the same species (as in the social insects), and in others entire tissues and organ systems may be polyploid despite the rest of the body being diploid (as in the mammalian liver). For many organisms, especially plants and fungi, changes in ploidy level between generations are major drivers of speciation. In mammals and birds, ploidy changes are typically fatal.[7] There is, however, evidence of polyploidy in organisms now considered to be diploid, suggesting that polyploidy has contributed to evolutionary diversification in plants and animals through successive rounds of polyploidization and rediploidization.[8][9]

Humans are diploid organisms, normally carrying two complete sets of chromosomes in their somatic cells: two copies of paternal and maternal chromosomes, respectively, in each of the 23 homologous pairs of chromosomes that humans normally have. This results in two homologous pairs within each of the 23 homologous pairs, providing a full complement of 46 chromosomes. This total number of individual chromosomes (counting all complete sets) is called the chromosome number or chromosome complement. The number of chromosomes found in a single complete set of chromosomes is called the monoploid number (x). The haploid number (n) refers to the total number of chromosomes found in a gamete (a sperm or egg cell produced by meiosis in preparation for sexual reproduction). Under normal conditions, the haploid number is exactly half the total number of chromosomes present in the organism's somatic cells, with one paternal and maternal copy in each chromosome pair. For diploid organisms, the monoploid number and haploid number are equal; in humans, both are equal to 23. When a human germ cell undergoes meiosis, the diploid 46 chromosome complement is split in half to form haploid gametes. After fusion of a male and a female gamete (each containing 1 set of 23 chromosomes) during fertilization, the resulting zygote again has the full complement of 46 chromosomes: 2 sets of 23 chromosomes. Euploidy and aneuploidy describe having a number of chromosomes that is an exact multiple of the number of chromosomes in a normal gamete; and having any other number, respectively. For example, a person with Turner syndrome may be missing one sex chromosome (X or Y), resulting in a (45,X) karyotype instead of the usual (46,XX) or (46,XY). This is a type of aneuploidy and cells from the person may be said to be aneuploid with a (diploid) chromosome complement of 45.

Etymology

The term ploidy is a back-formation from haploidy and diploidy. "Ploid" is a combination of Ancient Greek -πλόος (-plóos, “-fold”) and -ειδής (-eidḗs), from εἶδος (eîdos, "form, likeness").[a] The principal meaning of the Greek word ᾰ̔πλόος (haplóos) is "single",[10] from ἁ- (ha-, “one, same”).[11] διπλόος (diplóos) means "duplex" or "two-fold". Diploid therefore means "duplex-shaped" (compare "humanoid", "human-shaped").

Polish botanist Eduard Strasburger coined the terms haploid and diploid in 1905.[b] Some authors suggest that Strasburger based the terms on August Weismann's conception of the id (or germ plasm),[14][15][16] hence haplo-id and diplo-id. The two terms were brought into the English language from German through William Henry Lang's 1908 translation of a 1906 textbook by Strasburger and colleagues.[17][citation needed]

Types of ploidy

Haploid and monoploid

 
A comparison of sexual reproduction in predominantly haploid organisms and predominantly diploid organisms.

1) A haploid organism is on the left and a diploid organism is on the right.
2 and 3) Haploid egg and sperm carrying the dominant purple gene and the recessive blue gene, respectively. These gametes are produced by simple mitosis of cells in the germ line.
4 and 5) Haploid sperm and egg carrying the recessive blue gene and the dominant purple gene, respectively. These gametes are produced by meiosis, which halves the number of chromosomes in the diploid germ cells.
6) The short-lived diploid state of haploid organisms, a zygote generated by the union of two haploid gametes during sex.
7) The diploid zygote which has just been fertilized by the union of haploid egg and sperm during sex.
8) Cells of the diploid structure quickly undergo meiosis to produce spores containing the meiotically halved number of chromosomes, restoring haploidy. These spores express either the mother's dominant gene or the father's recessive gene and proceed by mitotic division to build a new entirely haploid organism.
9) The diploid zygote proceeds by mitotic division to build a new entirely diploid organism. These cells possess both the purple and blue genes, but only the purple gene is expressed since it is dominant over the recessive blue gene.

The term haploid is used with two distinct but related definitions. In the most generic sense, haploid refers to having the number of sets of chromosomes normally found in a gamete.[18] Because two gametes necessarily combine during sexual reproduction to form a single zygote from which somatic cells are generated, healthy gametes always possess exactly half the number of sets of chromosomes found in the somatic cells, and therefore "haploid" in this sense refers to having exactly half the number of sets of chromosomes found in a somatic cell. By this definition, an organism whose gametic cells contain a single copy of each chromosome (one set of chromosomes) may be considered haploid while the somatic cells, containing two copies of each chromosome (two sets of chromosomes), are diploid. This scheme of diploid somatic cells and haploid gametes is widely used in the animal kingdom and is the simplest to illustrate in diagrams of genetics concepts. But this definition also allows for haploid gametes with more than one set of chromosomes. As given above, gametes are by definition haploid, regardless of the actual number of sets of chromosomes they contain. An organism whose somatic cells are tetraploid (four sets of chromosomes), for example, will produce gametes by meiosis that contain two sets of chromosomes. These gametes might still be called haploid even though they are numerically diploid.

An alternative usage defines "haploid" as having a single copy of each chromosome – that is, one and only one set of chromosomes.[19] In this case, the nucleus of a eukaryotic cell is said to be haploid only if it has a single set of chromosomes, each one not being part of a pair. By extension a cell may be called haploid if its nucleus has one set of chromosomes, and an organism may be called haploid if its body cells (somatic cells) have one set of chromosomes per cell. By this definition haploid therefore would not be used to refer to the gametes produced by the tetraploid organism in the example above, since these gametes are numerically diploid. The term monoploid is often used as a less ambiguous way to describe a single set of chromosomes; by this second definition, haploid and monoploid are identical and can be used interchangeably.

Gametes (sperm and ova) are haploid cells. The haploid gametes produced by most organisms combine to form a zygote with n pairs of chromosomes, i.e. 2n chromosomes in total. The chromosomes in each pair, one of which comes from the sperm and one from the egg, are said to be homologous. Cells and organisms with pairs of homologous chromosomes are called diploid. For example, most animals are diploid and produce haploid gametes. During meiosis, sex cell precursors have their number of chromosomes halved by randomly "choosing" one member of each pair of chromosomes, resulting in haploid gametes. Because homologous chromosomes usually differ genetically, gametes usually differ genetically from one another.[citation needed]

All plants and many fungi and algae switch between a haploid and a diploid state, with one of the stages emphasized over the other. This is called alternation of generations. Most fungi and algae are haploid during the principal stage of their life cycle, as are some primitive plants like mosses. More recently evolved plants, like the gymnosperms and angiosperms, spend the majority of their life cycle in the diploid stage. Most animals are diploid, but male bees, wasps, and ants are haploid organisms because they develop from unfertilized, haploid eggs, while females (workers and queens) are diploid, making their system haplodiploid.

In some cases there is evidence that the n chromosomes in a haploid set have resulted from duplications of an originally smaller set of chromosomes. This "base" number – the number of apparently originally unique chromosomes in a haploid set – is called the monoploid number,[20] also known as basic or cardinal number,[21] or fundamental number.[22][23] As an example, the chromosomes of common wheat are believed to be derived from three different ancestral species, each of which had 7 chromosomes in its haploid gametes. The monoploid number is thus 7 and the haploid number is 3 × 7 = 21. In general n is a multiple of x. The somatic cells in a wheat plant have six sets of 7 chromosomes: three sets from the egg and three sets from the sperm which fused to form the plant, giving a total of 42 chromosomes. As a formula, for wheat 2n = 6x = 42, so that the haploid number n is 21 and the monoploid number x is 7. The gametes of common wheat are considered to be haploid, since they contain half the genetic information of somatic cells, but they are not monoploid, as they still contain three complete sets of chromosomes (n = 3x).[24]

In the case of wheat, the origin of its haploid number of 21 chromosomes from three sets of 7 chromosomes can be demonstrated. In many other organisms, although the number of chromosomes may have originated in this way, this is no longer clear, and the monoploid number is regarded as the same as the haploid number. Thus in humans, x = n = 23.

Diploid

 
Karyogram of a typical human cell, showing a diploid set of 22 homologous autosomal chromosome pairs. It also shows both the female (XX) and male (XY) versions of the two sex chromosomes (at bottom right), as well as the mitochondrial genome (to scale at bottom left).

Diploid cells have two homologous copies of each chromosome, usually one from the mother and one from the father. All or nearly all mammals are diploid organisms. The suspected tetraploid (possessing four-chromosome sets) plains viscacha rat (Tympanoctomys barrerae) and golden viscacha rat (Pipanacoctomys aureus)[25] have been regarded as the only known exceptions (as of 2004).[26] However, some genetic studies have rejected any polyploidism in mammals as unlikely, and suggest that amplification and dispersion of repetitive sequences best explain the large genome size of these two rodents.[27] All normal diploid individuals have some small fraction of cells that display polyploidy. Human diploid cells have 46 chromosomes (the somatic number, 2n) and human haploid gametes (egg and sperm) have 23 chromosomes (n). Retroviruses that contain two copies of their RNA genome in each viral particle are also said to be diploid. Examples include human foamy virus, human T-lymphotropic virus, and HIV.[28]

Polyploidy

Polyploidy is the state where all cells have multiple sets of chromosomes beyond the basic set, usually 3 or more. Specific terms are triploid (3 sets), tetraploid (4 sets), pentaploid (5 sets), hexaploid (6 sets), heptaploid[2] or septaploid[3] (7 sets), octoploid (8 sets), nonaploid (9 sets), decaploid (10 sets), undecaploid (11 sets), dodecaploid (12 sets), tridecaploid (13 sets), tetradecaploid (14 sets), etc.[29][30][31][32] Some higher ploidies include hexadecaploid (16 sets), dotriacontaploid (32 sets), and tetrahexacontaploid (64 sets),[33] though Greek terminology may be set aside for readability in cases of higher ploidy (such as "16-ploid").[31] Polytene chromosomes of plants and fruit flies can be 1024-ploid.[34][35] Ploidy of systems such as the salivary gland, elaiosome, endosperm, and trophoblast can exceed this, up to 1048576-ploid in the silk glands of the commercial silkworm Bombyx mori.[36]

The chromosome sets may be from the same species or from closely related species. In the latter case, these are known as allopolyploids (or amphidiploids, which are allopolyploids that behave as if they were normal diploids). Allopolyploids are formed from the hybridization of two separate species. In plants, this probably most often occurs from the pairing of meiotically unreduced gametes, and not by diploid–diploid hybridization followed by chromosome doubling.[37] The so-called Brassica triangle is an example of allopolyploidy, where three different parent species have hybridized in all possible pair combinations to produce three new species.

Polyploidy occurs commonly in plants, but rarely in animals. Even in diploid organisms, many somatic cells are polyploid due to a process called endoreduplication, where duplication of the genome occurs without mitosis (cell division). The extreme in polyploidy occurs in the fern genus Ophioglossum, the adder's-tongues, in which polyploidy results in chromosome counts in the hundreds, or, in at least one case, well over one thousand.

It is possible for polyploid organisms to revert to lower ploidy by haploidisation.

In bacteria and archaea

Polyploidy is a characteristic of the bacterium Deinococcus radiodurans [38] and of the archaeon Halobacterium salinarum.[39] These two species are highly resistant to ionizing radiation and desiccation, conditions that induce DNA double-strand breaks.[40][41] This resistance appears to be due to efficient homologous recombinational repair.

Variable or indefinite ploidy

Depending on growth conditions, prokaryotes such as bacteria may have a chromosome copy number of 1 to 4, and that number is commonly fractional, counting portions of the chromosome partly replicated at a given time. This is because under exponential growth conditions the cells are able to replicate their DNA faster than they can divide.

In ciliates, the macronucleus is called ampliploid, because only part of the genome is amplified.[42]

Mixoploidy

Mixoploidy is the case where two cell lines, one diploid and one polyploid, coexist within the same organism. Though polyploidy in humans is not viable, mixoploidy has been found in live adults and children.[43] There are two types: diploid-triploid mixoploidy, in which some cells have 46 chromosomes and some have 69,[44] and diploid-tetraploid mixoploidy, in which some cells have 46 and some have 92 chromosomes. It is a major topic of cytology.

Dihaploidy and polyhaploidy

Dihaploid and polyhaploid cells are formed by haploidisation of polyploids, i.e., by halving the chromosome constitution.

Dihaploids (which are diploid) are important for selective breeding of tetraploid crop plants (notably potatoes), because selection is faster with diploids than with tetraploids. Tetraploids can be reconstituted from the diploids, for example by somatic fusion.

The term "dihaploid" was coined by Bender[45] to combine in one word the number of genome copies (diploid) and their origin (haploid). The term is well established in this original sense,[46][47] but it has also been used for doubled monoploids or doubled haploids, which are homozygous and used for genetic research.[48]

Euploidy and aneuploidy

Euploidy (Greek eu, "true" or "even") is the state of a cell or organism having one or more than one set of the same set of chromosomes, possibly excluding the sex-determining chromosomes. For example, most human cells have 2 of each of the 23 homologous monoploid chromosomes, for a total of 46 chromosomes. A human cell with one extra set of the 23 normal chromosomes (functionally triploid) would be considered euploid. Euploid karyotypes would consequentially be a multiple of the haploid number, which in humans is 23.

Aneuploidy is the state where one or more individual chromosomes of a normal set are absent or present in more than their usual number of copies (excluding the absence or presence of complete sets, which is considered euploidy). Unlike euploidy, aneuploid karyotypes will not be a multiple of the haploid number. In humans, examples of aneuploidy include having a single extra chromosome (as in Down syndrome, where affected individuals have three copies of chromosome 21) or missing a chromosome (as in Turner syndrome, where affected individuals have only one sex chromosome). Aneuploid karyotypes are given names with the suffix -somy (rather than -ploidy, used for euploid karyotypes), such as trisomy and monosomy.

Homoploid

Homoploid means "at the same ploidy level", i.e. having the same number of homologous chromosomes. For example, homoploid hybridization is hybridization where the offspring have the same ploidy level as the two parental species. This contrasts with a common situation in plants where chromosome doubling accompanies or occurs soon after hybridization. Similarly, homoploid speciation contrasts with polyploid speciation.[citation needed]

Zygoidy and azygoidy

Zygoidy is the state in which the chromosomes are paired and can undergo meiosis. The zygoid state of a species may be diploid or polyploid.[49][50] In the azygoid state the chromosomes are unpaired. It may be the natural state of some asexual species or may occur after meiosis. In diploid organisms the azygoid state is monoploid. (See below for dihaploidy.)

Special cases

More than one nucleus per cell

In the strictest sense, ploidy refers to the number of sets of chromosomes in a single nucleus rather than in the cell as a whole. Because in most situations there is only one nucleus per cell, it is commonplace to speak of the ploidy of a cell, but in cases in which there is more than one nucleus per cell, more specific definitions are required when ploidy is discussed. Authors may at times report the total combined ploidy of all nuclei present within the cell membrane of a syncytium,[36] though usually the ploidy of each nucleus is described individually. For example, a fungal dikaryon with two separate haploid nuclei is distinguished from a diploid cell in which the chromosomes share a nucleus and can be shuffled together.[51]

Ancestral ploidy levels

It is possible on rare occasions for ploidy to increase in the germline, which can result in polyploid offspring and ultimately polyploid species. This is an important evolutionary mechanism in both plants and animals and is known as a primary driver of speciation.[8] As a result, it may become desirable to distinguish between the ploidy of a species or variety as it presently breeds and that of an ancestor. The number of chromosomes in the ancestral (non-homologous) set is called the monoploid number (x), and is distinct from the haploid number (n) in the organism as it now reproduces.

Common wheat (Triticum aestivum) is an organism in which x and n differ. Each plant has a total of six sets of chromosomes (with two sets likely having been obtained from each of three different diploid species that are its distant ancestors). The somatic cells are hexaploid, 2n = 6x = 42 (where the monoploid number x = 7 and the haploid number n = 21). The gametes are haploid for their own species, but triploid, with three sets of chromosomes, by comparison to a probable evolutionary ancestor, einkorn wheat.[citation needed]

Tetraploidy (four sets of chromosomes, 2n = 4x) is common in many plant species, and also occurs in amphibians, reptiles, and insects. For example, species of Xenopus (African toads) form a ploidy series, featuring diploid (X. tropicalis, 2n=20), tetraploid (X. laevis, 4n=36), octaploid (X. wittei, 8n=72), and dodecaploid (X. ruwenzoriensis, 12n=108) species.[52]

Over evolutionary time scales in which chromosomal polymorphisms accumulate, these changes become less apparent by karyotype – for example, humans are generally regarded as diploid, but the 2R hypothesis has confirmed two rounds of whole genome duplication in early vertebrate ancestors.

Haplodiploidy

Ploidy can also vary between individuals of the same species or at different stages of the life cycle.[53][54] In some insects it differs by caste. In humans, only the gametes are haploid, but in many of the social insects, including ants, bees, and termites, males develop from unfertilized eggs, making them haploid for their entire lives, even as adults.

In the Australian bulldog ant, Myrmecia pilosula, a haplodiploid species, haploid individuals of this species have a single chromosome and diploid individuals have two chromosomes.[55] In Entamoeba, the ploidy level varies from 4n to 40n in a single population.[56] Alternation of generations occurs in most plants, with individuals "alternating" ploidy level between different stages of their sexual life cycle.

Tissue-specific polyploidy

In large multicellular organisms, variations in ploidy level between different tissues, organs, or cell lineages are common. Because the chromosome number is generally reduced only by the specialized process of meiosis, the somatic cells of the body inherit and maintain the chromosome number of the zygote by mitosis. However, in many situations somatic cells double their copy number by means of endoreduplication as an aspect of cellular differentiation. For example, the hearts of two-year-old human children contain 85% diploid and 15% tetraploid nuclei, but by 12 years of age the proportions become approximately equal, and adults examined contained 27% diploid, 71% tetraploid and 2% octaploid nuclei.[57]

Adaptive and ecological significance of variation in ploidy

There is continued study and debate regarding the fitness advantages or disadvantages conferred by different ploidy levels. A study comparing the karyotypes of endangered or invasive plants with those of their relatives found that being polyploid as opposed to diploid is associated with a 14% lower risk of being endangered, and a 20% greater chance of being invasive.[58] Polyploidy may be associated with increased vigor and adaptability.[59] Some studies suggest that selection is more likely to favor diploidy in host species and haploidy in parasite species.[60]

When a germ cell with an uneven number of chromosomes undergoes meiosis, the chromosomes cannot be evenly divided between the daughter cells, resulting in aneuploid gametes. Triploid organisms, for instance, are usually sterile. Because of this, triploidy is commonly exploited in agriculture to produce seedless fruit such as bananas and watermelons. If the fertilization of human gametes results in three sets of chromosomes, the condition is called triploid syndrome.

In unicellular organisms the ploidy nutrient limitation hypothesis suggests that nutrient limitation should encourage haploidy in preference to higher ploidies. This hypothesis is due to the higher surface-to-volume ratio of haploids, which eases nutrient uptake, thereby increasing the internal nutrient-to-demand ratio. Mable 2001 finds Saccharomyces cerevisiae to be somewhat inconsistent with this hypothesis however, as haploid growth is faster than diploid under high nutrient conditions. The NLH is also tested in haploid, diploid, and polyploid fungi by Gerstein et al 2017. This result is also more complex: On the one hand, under phosphorus and other nutrient limitation, lower ploidy is selected as expected. However under normal nutrient levels or under limitation of only nitrogen, higher ploidy was selected. Thus the NLH – and more generally, the idea that haploidy is selected by harsher conditions – is cast into doubt by these results.[61]

Older WGDs have also been investigated. Only as recently as 2015 was the ancient whole genome duplication in Baker's yeast proven to be allopolyploid, by Marcet-Houben and Gabaldón 2015. It still remains to be explained why there are not more polyploid events in fungi, and the place of neopolyploidy and mesopolyploidy in fungal history.[61]

Glossary of ploidy numbers

Term Description
Ploidy number Number of chromosome sets
Monoploid number (x) Number of chromosomes found in a single complete set
Chromosome number Total number of chromosomes in all sets combined
Zygotic number Number of chromosomes in zygotic cells
Haploid or gametic number (n) Number of chromosomes found in gametes
Diploid number Chromosome number of a diploid organism
Tetraploid number Chromosome number of a tetraploid organism

The common potato (Solanum tuberosum) is an example of a tetraploid organism, carrying four sets of chromosomes. During sexual reproduction, each potato plant inherits two sets of 12 chromosomes from the pollen parent, and two sets of 12 chromosomes from the ovule parent. The four sets combined provide a full complement of 48 chromosomes. The haploid number (half of 48) is 24. The monoploid number equals the total chromosome number divided by the ploidy level of the somatic cells: 48 chromosomes in total divided by a ploidy level of 4 equals a monoploid number of 12. Hence, the monoploid number (12) and haploid number (24) are distinct in this example.

However, commercial potato crops (as well as many other crop plants) are commonly propagated vegetatively (by asexual reproduction through mitosis),[62] in which case new individuals are produced from a single parent, without the involvement of gametes and fertilization, and all the offspring are genetically identical to each other and to the parent, including in chromosome number. The parents of these vegetative clones may still be capable of producing haploid gametes in preparation for sexual reproduction, but these gametes are not used to create the vegetative offspring by this route.

Specific examples

Examples of various ploidy levels in species with x=11
Species Ploidy Number of chromosomes
Eucalyptus spp. Diploid 2x = 22
Banana (Musa spp.) Triploid 3x = 33
Coffea arabica Tetraploid 4x = 44
Sequoia sempervirens Hexaploid 6x = 66
Opuntia ficus-indica Octoploid 8x = 88
List of common organisms by chromosome count
Species Number of chromosomes Ploidy number
Vinegar/fruit fly 8 2
Wheat 14, 28 or 42 2, 4 or 6
Crocodilian 32, 34, or 42 2
Apple 34, 51, or 68 2, 3 or 4
Human 46 2
Horse 64 2
Chicken 78 2
Gold fish 100 or more 2 or polyploid

Notes

  1. ^ Compare the etymology of tuple, from the Latin for "-fold".
  2. ^ The original text in German is as follows: "Schließlich wäre es vielleicht erwünscht, wenn den Bezeichnungen Gametophyt und Sporophyt, die sich allein nur auf Pflanzen mit einfacher und mit doppelter Chromosomenzahl anwenden lassen, solche zur Seite gestellt würden, welche auch für das Tierreich passen. Ich erlaube mir zu diesem Zwecke die Worte Haploid und Diploid, bezw. haploidische und diploidische Generation vorzuschlagen."[12][13]

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Sources

  • Griffiths, A. J. et al. 2000. An introduction to genetic analysis, 7th ed. W. H. Freeman, New York ISBN 0-7167-3520-2

External links

Some eukaryotic genome-scale or genome size databases and other sources which may list the ploidy levels of many organisms:

  • Animal genome size database
  • Fungal genome size database
  • Protist genome-scale database of Ensembl Genomes
  • Nuismer S.; Otto S.P. (2004). "Host-parasite interactions and the evolution of ploidy". Proc. Natl. Acad. Sci. USA. 101 (30): 11036–11039. Bibcode:2004PNAS..10111036N. doi:10.1073/pnas.0403151101. PMC 503737. PMID 15252199. (Supporting Data Set, with information on ploidy level and number of chromosomes of several protists)
  • Chromosome number and ploidy mutations YouTube tutorial video

ploidy, also, list, organisms, chromosome, count, chromosome, number, various, organisms, ɔɪ, number, complete, sets, chromosomes, cell, hence, number, possible, alleles, autosomal, pseudoautosomal, genes, sets, chromosomes, refer, number, maternal, paternal, . See also List of organisms by chromosome count and Chromosome Number in various organisms Ploidy ˈ p l ɔɪ d i is the number of complete sets of chromosomes in a cell and hence the number of possible alleles for autosomal and pseudoautosomal genes Sets of chromosomes refer to the number of maternal and paternal chromosome copies respectively in each homologous chromosome pair which chromosomes naturally exist as Somatic cells tissues and individual organisms can be described according to the number of sets of chromosomes present the ploidy level monoploid 1 set diploid 2 sets triploid 3 sets tetraploid 4 sets pentaploid 5 sets hexaploid 6 sets heptaploid 2 or septaploid 3 7 sets etc The generic term polyploid is often used to describe cells with three or more chromosome sets 4 5 A haploid set that consists of a single complete set of chromosomes equal to the monoploid set as shown in the picture above must belong to a diploid species If a haploid set consists of two sets it must be of a tetraploid four sets species 1 Virtually all sexually reproducing organisms are made up of somatic cells that are diploid or greater but ploidy level may vary widely between different organisms between different tissues within the same organism and at different stages in an organism s life cycle Half of all known plant genera contain polyploid species and about two thirds of all grasses are polyploid 6 Many animals are uniformly diploid though polyploidy is common in invertebrates reptiles and amphibians In some species ploidy varies between individuals of the same species as in the social insects and in others entire tissues and organ systems may be polyploid despite the rest of the body being diploid as in the mammalian liver For many organisms especially plants and fungi changes in ploidy level between generations are major drivers of speciation In mammals and birds ploidy changes are typically fatal 7 There is however evidence of polyploidy in organisms now considered to be diploid suggesting that polyploidy has contributed to evolutionary diversification in plants and animals through successive rounds of polyploidization and rediploidization 8 9 Humans are diploid organisms normally carrying two complete sets of chromosomes in their somatic cells two copies of paternal and maternal chromosomes respectively in each of the 23 homologous pairs of chromosomes that humans normally have This results in two homologous pairs within each of the 23 homologous pairs providing a full complement of 46 chromosomes This total number of individual chromosomes counting all complete sets is called the chromosome number or chromosome complement The number of chromosomes found in a single complete set of chromosomes is called the monoploid number x The haploid number n refers to the total number of chromosomes found in a gamete a sperm or egg cell produced by meiosis in preparation for sexual reproduction Under normal conditions the haploid number is exactly half the total number of chromosomes present in the organism s somatic cells with one paternal and maternal copy in each chromosome pair For diploid organisms the monoploid number and haploid number are equal in humans both are equal to 23 When a human germ cell undergoes meiosis the diploid 46 chromosome complement is split in half to form haploid gametes After fusion of a male and a female gamete each containing 1 set of 23 chromosomes during fertilization the resulting zygote again has the full complement of 46 chromosomes 2 sets of 23 chromosomes Euploidy and aneuploidy describe having a number of chromosomes that is an exact multiple of the number of chromosomes in a normal gamete and having any other number respectively For example a person with Turner syndrome may be missing one sex chromosome X or Y resulting in a 45 X karyotype instead of the usual 46 XX or 46 XY This is a type of aneuploidy and cells from the person may be said to be aneuploid with a diploid chromosome complement of 45 Contents 1 Etymology 2 Types of ploidy 2 1 Haploid and monoploid 2 2 Diploid 2 3 Polyploidy 2 3 1 In bacteria and archaea 2 4 Variable or indefinite ploidy 2 5 Mixoploidy 2 6 Dihaploidy and polyhaploidy 2 7 Euploidy and aneuploidy 2 8 Homoploid 2 9 Zygoidy and azygoidy 3 Special cases 3 1 More than one nucleus per cell 3 2 Ancestral ploidy levels 3 3 Haplodiploidy 3 4 Tissue specific polyploidy 4 Adaptive and ecological significance of variation in ploidy 5 Glossary of ploidy numbers 6 Specific examples 7 Notes 8 References 9 Sources 10 External linksEtymology EditThe term ploidy is a back formation from haploidy and diploidy Ploid is a combination of Ancient Greek ploos ploos fold and eidhs eidḗs from eἶdos eidos form likeness a The principal meaning of the Greek word ᾰ ploos haploos is single 10 from ἁ ha one same 11 diploos diploos means duplex or two fold Diploid therefore means duplex shaped compare humanoid human shaped Polish botanist Eduard Strasburger coined the terms haploid and diploid in 1905 b Some authors suggest that Strasburger based the terms on August Weismann s conception of the id or germ plasm 14 15 16 hence haplo id and diplo id The two terms were brought into the English language from German through William Henry Lang s 1908 translation of a 1906 textbook by Strasburger and colleagues 17 citation needed Types of ploidy EditHaploid and monoploid Edit A comparison of sexual reproduction in predominantly haploid organisms and predominantly diploid organisms 1 A haploid organism is on the left and a diploid organism is on the right 2 and 3 Haploid egg and sperm carrying the dominant purple gene and the recessive blue gene respectively These gametes are produced by simple mitosis of cells in the germ line 4 and 5 Haploid sperm and egg carrying the recessive blue gene and the dominant purple gene respectively These gametes are produced by meiosis which halves the number of chromosomes in the diploid germ cells 6 The short lived diploid state of haploid organisms a zygote generated by the union of two haploid gametes during sex 7 The diploid zygote which has just been fertilized by the union of haploid egg and sperm during sex 8 Cells of the diploid structure quickly undergo meiosis to produce spores containing the meiotically halved number of chromosomes restoring haploidy These spores express either the mother s dominant gene or the father s recessive gene and proceed by mitotic division to build a new entirely haploid organism 9 The diploid zygote proceeds by mitotic division to build a new entirely diploid organism These cells possess both the purple and blue genes but only the purple gene is expressed since it is dominant over the recessive blue gene The term haploid is used with two distinct but related definitions In the most generic sense haploid refers to having the number of sets of chromosomes normally found in a gamete 18 Because two gametes necessarily combine during sexual reproduction to form a single zygote from which somatic cells are generated healthy gametes always possess exactly half the number of sets of chromosomes found in the somatic cells and therefore haploid in this sense refers to having exactly half the number of sets of chromosomes found in a somatic cell By this definition an organism whose gametic cells contain a single copy of each chromosome one set of chromosomes may be considered haploid while the somatic cells containing two copies of each chromosome two sets of chromosomes are diploid This scheme of diploid somatic cells and haploid gametes is widely used in the animal kingdom and is the simplest to illustrate in diagrams of genetics concepts But this definition also allows for haploid gametes with more than one set of chromosomes As given above gametes are by definition haploid regardless of the actual number of sets of chromosomes they contain An organism whose somatic cells are tetraploid four sets of chromosomes for example will produce gametes by meiosis that contain two sets of chromosomes These gametes might still be called haploid even though they are numerically diploid An alternative usage defines haploid as having a single copy of each chromosome that is one and only one set of chromosomes 19 In this case the nucleus of a eukaryotic cell is said to be haploid only if it has a single set of chromosomes each one not being part of a pair By extension a cell may be called haploid if its nucleus has one set of chromosomes and an organism may be called haploid if its body cells somatic cells have one set of chromosomes per cell By this definition haploid therefore would not be used to refer to the gametes produced by the tetraploid organism in the example above since these gametes are numerically diploid The term monoploid is often used as a less ambiguous way to describe a single set of chromosomes by this second definition haploid and monoploid are identical and can be used interchangeably Gametes sperm and ova are haploid cells The haploid gametes produced by most organisms combine to form a zygote with n pairs of chromosomes i e 2n chromosomes in total The chromosomes in each pair one of which comes from the sperm and one from the egg are said to be homologous Cells and organisms with pairs of homologous chromosomes are called diploid For example most animals are diploid and produce haploid gametes During meiosis sex cell precursors have their number of chromosomes halved by randomly choosing one member of each pair of chromosomes resulting in haploid gametes Because homologous chromosomes usually differ genetically gametes usually differ genetically from one another citation needed All plants and many fungi and algae switch between a haploid and a diploid state with one of the stages emphasized over the other This is called alternation of generations Most fungi and algae are haploid during the principal stage of their life cycle as are some primitive plants like mosses More recently evolved plants like the gymnosperms and angiosperms spend the majority of their life cycle in the diploid stage Most animals are diploid but male bees wasps and ants are haploid organisms because they develop from unfertilized haploid eggs while females workers and queens are diploid making their system haplodiploid In some cases there is evidence that the n chromosomes in a haploid set have resulted from duplications of an originally smaller set of chromosomes This base number the number of apparently originally unique chromosomes in a haploid set is called the monoploid number 20 also known as basic or cardinal number 21 or fundamental number 22 23 As an example the chromosomes of common wheat are believed to be derived from three different ancestral species each of which had 7 chromosomes in its haploid gametes The monoploid number is thus 7 and the haploid number is 3 7 21 In general n is a multiple of x The somatic cells in a wheat plant have six sets of 7 chromosomes three sets from the egg and three sets from the sperm which fused to form the plant giving a total of 42 chromosomes As a formula for wheat 2n 6x 42 so that the haploid number n is 21 and the monoploid number x is 7 The gametes of common wheat are considered to be haploid since they contain half the genetic information of somatic cells but they are not monoploid as they still contain three complete sets of chromosomes n 3x 24 In the case of wheat the origin of its haploid number of 21 chromosomes from three sets of 7 chromosomes can be demonstrated In many other organisms although the number of chromosomes may have originated in this way this is no longer clear and the monoploid number is regarded as the same as the haploid number Thus in humans x n 23 Diploid Edit Karyogram of a typical human cell showing a diploid set of 22 homologous autosomal chromosome pairs It also shows both the female XX and male XY versions of the two sex chromosomes at bottom right as well as the mitochondrial genome to scale at bottom left Further information Karyotype Diploid cells have two homologous copies of each chromosome usually one from the mother and one from the father All or nearly all mammals are diploid organisms The suspected tetraploid possessing four chromosome sets plains viscacha rat Tympanoctomys barrerae and golden viscacha rat Pipanacoctomys aureus 25 have been regarded as the only known exceptions as of 2004 26 However some genetic studies have rejected any polyploidism in mammals as unlikely and suggest that amplification and dispersion of repetitive sequences best explain the large genome size of these two rodents 27 All normal diploid individuals have some small fraction of cells that display polyploidy Human diploid cells have 46 chromosomes the somatic number 2n and human haploid gametes egg and sperm have 23 chromosomes n Retroviruses that contain two copies of their RNA genome in each viral particle are also said to be diploid Examples include human foamy virus human T lymphotropic virus and HIV 28 Polyploidy Edit Main article Polyploidy Polyploidy is the state where all cells have multiple sets of chromosomes beyond the basic set usually 3 or more Specific terms are triploid 3 sets tetraploid 4 sets pentaploid 5 sets hexaploid 6 sets heptaploid 2 or septaploid 3 7 sets octoploid 8 sets nonaploid 9 sets decaploid 10 sets undecaploid 11 sets dodecaploid 12 sets tridecaploid 13 sets tetradecaploid 14 sets etc 29 30 31 32 Some higher ploidies include hexadecaploid 16 sets dotriacontaploid 32 sets and tetrahexacontaploid 64 sets 33 though Greek terminology may be set aside for readability in cases of higher ploidy such as 16 ploid 31 Polytene chromosomes of plants and fruit flies can be 1024 ploid 34 35 Ploidy of systems such as the salivary gland elaiosome endosperm and trophoblast can exceed this up to 1048576 ploid in the silk glands of the commercial silkworm Bombyx mori 36 The chromosome sets may be from the same species or from closely related species In the latter case these are known as allopolyploids or amphidiploids which are allopolyploids that behave as if they were normal diploids Allopolyploids are formed from the hybridization of two separate species In plants this probably most often occurs from the pairing of meiotically unreduced gametes and not by diploid diploid hybridization followed by chromosome doubling 37 The so called Brassica triangle is an example of allopolyploidy where three different parent species have hybridized in all possible pair combinations to produce three new species Polyploidy occurs commonly in plants but rarely in animals Even in diploid organisms many somatic cells are polyploid due to a process called endoreduplication where duplication of the genome occurs without mitosis cell division The extreme in polyploidy occurs in the fern genus Ophioglossum the adder s tongues in which polyploidy results in chromosome counts in the hundreds or in at least one case well over one thousand It is possible for polyploid organisms to revert to lower ploidy by haploidisation In bacteria and archaea Edit Polyploidy is a characteristic of the bacterium Deinococcus radiodurans 38 and of the archaeon Halobacterium salinarum 39 These two species are highly resistant to ionizing radiation and desiccation conditions that induce DNA double strand breaks 40 41 This resistance appears to be due to efficient homologous recombinational repair Variable or indefinite ploidy Edit Depending on growth conditions prokaryotes such as bacteria may have a chromosome copy number of 1 to 4 and that number is commonly fractional counting portions of the chromosome partly replicated at a given time This is because under exponential growth conditions the cells are able to replicate their DNA faster than they can divide In ciliates the macronucleus is called ampliploid because only part of the genome is amplified 42 Mixoploidy Edit Mixoploidy is the case where two cell lines one diploid and one polyploid coexist within the same organism Though polyploidy in humans is not viable mixoploidy has been found in live adults and children 43 There are two types diploid triploid mixoploidy in which some cells have 46 chromosomes and some have 69 44 and diploid tetraploid mixoploidy in which some cells have 46 and some have 92 chromosomes It is a major topic of cytology Dihaploidy and polyhaploidy Edit Not to be confused with haplodiploidy where diploid and haploid individuals are different sexes Dihaploid and polyhaploid cells are formed by haploidisation of polyploids i e by halving the chromosome constitution Dihaploids which are diploid are important for selective breeding of tetraploid crop plants notably potatoes because selection is faster with diploids than with tetraploids Tetraploids can be reconstituted from the diploids for example by somatic fusion The term dihaploid was coined by Bender 45 to combine in one word the number of genome copies diploid and their origin haploid The term is well established in this original sense 46 47 but it has also been used for doubled monoploids or doubled haploids which are homozygous and used for genetic research 48 Euploidy and aneuploidy Edit Euploidy Greek eu true or even is the state of a cell or organism having one or more than one set of the same set of chromosomes possibly excluding the sex determining chromosomes For example most human cells have 2 of each of the 23 homologous monoploid chromosomes for a total of 46 chromosomes A human cell with one extra set of the 23 normal chromosomes functionally triploid would be considered euploid Euploid karyotypes would consequentially be a multiple of the haploid number which in humans is 23 Aneuploidy is the state where one or more individual chromosomes of a normal set are absent or present in more than their usual number of copies excluding the absence or presence of complete sets which is considered euploidy Unlike euploidy aneuploid karyotypes will not be a multiple of the haploid number In humans examples of aneuploidy include having a single extra chromosome as in Down syndrome where affected individuals have three copies of chromosome 21 or missing a chromosome as in Turner syndrome where affected individuals have only one sex chromosome Aneuploid karyotypes are given names with the suffix somy rather than ploidy used for euploid karyotypes such as trisomy and monosomy Homoploid Edit Homoploid means at the same ploidy level i e having the same number of homologous chromosomes For example homoploid hybridization is hybridization where the offspring have the same ploidy level as the two parental species This contrasts with a common situation in plants where chromosome doubling accompanies or occurs soon after hybridization Similarly homoploid speciation contrasts with polyploid speciation citation needed Zygoidy and azygoidy Edit Zygoidy is the state in which the chromosomes are paired and can undergo meiosis The zygoid state of a species may be diploid or polyploid 49 50 In the azygoid state the chromosomes are unpaired It may be the natural state of some asexual species or may occur after meiosis In diploid organisms the azygoid state is monoploid See below for dihaploidy Special cases EditMore than one nucleus per cell Edit In the strictest sense ploidy refers to the number of sets of chromosomes in a single nucleus rather than in the cell as a whole Because in most situations there is only one nucleus per cell it is commonplace to speak of the ploidy of a cell but in cases in which there is more than one nucleus per cell more specific definitions are required when ploidy is discussed Authors may at times report the total combined ploidy of all nuclei present within the cell membrane of a syncytium 36 though usually the ploidy of each nucleus is described individually For example a fungal dikaryon with two separate haploid nuclei is distinguished from a diploid cell in which the chromosomes share a nucleus and can be shuffled together 51 Ancestral ploidy levels Edit It is possible on rare occasions for ploidy to increase in the germline which can result in polyploid offspring and ultimately polyploid species This is an important evolutionary mechanism in both plants and animals and is known as a primary driver of speciation 8 As a result it may become desirable to distinguish between the ploidy of a species or variety as it presently breeds and that of an ancestor The number of chromosomes in the ancestral non homologous set is called the monoploid number x and is distinct from the haploid number n in the organism as it now reproduces Common wheat Triticum aestivum is an organism in which x and n differ Each plant has a total of six sets of chromosomes with two sets likely having been obtained from each of three different diploid species that are its distant ancestors The somatic cells are hexaploid 2n 6x 42 where the monoploid number x 7 and the haploid number n 21 The gametes are haploid for their own species but triploid with three sets of chromosomes by comparison to a probable evolutionary ancestor einkorn wheat citation needed Tetraploidy four sets of chromosomes 2n 4x is common in many plant species and also occurs in amphibians reptiles and insects For example species of Xenopus African toads form a ploidy series featuring diploid X tropicalis 2n 20 tetraploid X laevis 4n 36 octaploid X wittei 8n 72 and dodecaploid X ruwenzoriensis 12n 108 species 52 Over evolutionary time scales in which chromosomal polymorphisms accumulate these changes become less apparent by karyotype for example humans are generally regarded as diploid but the 2R hypothesis has confirmed two rounds of whole genome duplication in early vertebrate ancestors Haplodiploidy Edit Main article Haplodiploidy Ploidy can also vary between individuals of the same species or at different stages of the life cycle 53 54 In some insects it differs by caste In humans only the gametes are haploid but in many of the social insects including ants bees and termites males develop from unfertilized eggs making them haploid for their entire lives even as adults In the Australian bulldog ant Myrmecia pilosula a haplodiploid species haploid individuals of this species have a single chromosome and diploid individuals have two chromosomes 55 In Entamoeba the ploidy level varies from 4n to 40n in a single population 56 Alternation of generations occurs in most plants with individuals alternating ploidy level between different stages of their sexual life cycle Tissue specific polyploidy Edit In large multicellular organisms variations in ploidy level between different tissues organs or cell lineages are common Because the chromosome number is generally reduced only by the specialized process of meiosis the somatic cells of the body inherit and maintain the chromosome number of the zygote by mitosis However in many situations somatic cells double their copy number by means of endoreduplication as an aspect of cellular differentiation For example the hearts of two year old human children contain 85 diploid and 15 tetraploid nuclei but by 12 years of age the proportions become approximately equal and adults examined contained 27 diploid 71 tetraploid and 2 octaploid nuclei 57 Adaptive and ecological significance of variation in ploidy EditThere is continued study and debate regarding the fitness advantages or disadvantages conferred by different ploidy levels A study comparing the karyotypes of endangered or invasive plants with those of their relatives found that being polyploid as opposed to diploid is associated with a 14 lower risk of being endangered and a 20 greater chance of being invasive 58 Polyploidy may be associated with increased vigor and adaptability 59 Some studies suggest that selection is more likely to favor diploidy in host species and haploidy in parasite species 60 When a germ cell with an uneven number of chromosomes undergoes meiosis the chromosomes cannot be evenly divided between the daughter cells resulting in aneuploid gametes Triploid organisms for instance are usually sterile Because of this triploidy is commonly exploited in agriculture to produce seedless fruit such as bananas and watermelons If the fertilization of human gametes results in three sets of chromosomes the condition is called triploid syndrome In unicellular organisms the ploidy nutrient limitation hypothesis suggests that nutrient limitation should encourage haploidy in preference to higher ploidies This hypothesis is due to the higher surface to volume ratio of haploids which eases nutrient uptake thereby increasing the internal nutrient to demand ratio Mable 2001 finds Saccharomyces cerevisiae to be somewhat inconsistent with this hypothesis however as haploid growth is faster than diploid under high nutrient conditions The NLH is also tested in haploid diploid and polyploid fungi by Gerstein et al 2017 This result is also more complex On the one hand under phosphorus and other nutrient limitation lower ploidy is selected as expected However under normal nutrient levels or under limitation of only nitrogen higher ploidy was selected Thus the NLH and more generally the idea that haploidy is selected by harsher conditions is cast into doubt by these results 61 Older WGDs have also been investigated Only as recently as 2015 was the ancient whole genome duplication in Baker s yeast proven to be allopolyploid by Marcet Houben and Gabaldon 2015 It still remains to be explained why there are not more polyploid events in fungi and the place of neopolyploidy and mesopolyploidy in fungal history 61 Glossary of ploidy numbers EditTerm DescriptionPloidy number Number of chromosome setsMonoploid number x Number of chromosomes found in a single complete setChromosome number Total number of chromosomes in all sets combinedZygotic number Number of chromosomes in zygotic cellsHaploid or gametic number n Number of chromosomes found in gametesDiploid number Chromosome number of a diploid organismTetraploid number Chromosome number of a tetraploid organismThe common potato Solanum tuberosum is an example of a tetraploid organism carrying four sets of chromosomes During sexual reproduction each potato plant inherits two sets of 12 chromosomes from the pollen parent and two sets of 12 chromosomes from the ovule parent The four sets combined provide a full complement of 48 chromosomes The haploid number half of 48 is 24 The monoploid number equals the total chromosome number divided by the ploidy level of the somatic cells 48 chromosomes in total divided by a ploidy level of 4 equals a monoploid number of 12 Hence the monoploid number 12 and haploid number 24 are distinct in this example However commercial potato crops as well as many other crop plants are commonly propagated vegetatively by asexual reproduction through mitosis 62 in which case new individuals are produced from a single parent without the involvement of gametes and fertilization and all the offspring are genetically identical to each other and to the parent including in chromosome number The parents of these vegetative clones may still be capable of producing haploid gametes in preparation for sexual reproduction but these gametes are not used to create the vegetative offspring by this route Specific examples EditExamples of various ploidy levels in species with x 11 Species Ploidy Number of chromosomesEucalyptus spp Diploid 2x 22Banana Musa spp Triploid 3x 33Coffea arabica Tetraploid 4x 44Sequoia sempervirens Hexaploid 6x 66Opuntia ficus indica Octoploid 8x 88List of common organisms by chromosome count Species Number of chromosomes Ploidy numberVinegar fruit fly 8 2Wheat 14 28 or 42 2 4 or 6Crocodilian 32 34 or 42 2Apple 34 51 or 68 2 3 or 4Human 46 2Horse 64 2Chicken 78 2Gold fish 100 or more 2 or polyploidNotes Edit Compare the etymology of tuple from the Latin for fold The original text in German is as follows Schliesslich ware es vielleicht erwunscht wenn den Bezeichnungen Gametophyt und Sporophyt die sich allein nur auf Pflanzen mit einfacher und mit doppelter Chromosomenzahl anwenden lassen solche zur Seite gestellt wurden welche auch fur das Tierreich passen Ich erlaube mir zu diesem Zwecke die Worte Haploid und Diploid bezw haploidische und diploidische Generation vorzuschlagen 12 13 References Edit Daniel Hartl 2011 Essential Genetics A Genomics Perspective Jones amp Bartlett Learning p 177 ISBN 978 0 7637 7364 9 a b U R Murty 1973 Morphology of pachytene chromosomes and its bearing on the nature of polyploidy in the cytological races of Apluda mutica L Genetica 44 2 234 243 doi 10 1007 bf00119108 S2CID 45850598 a b Tuguo Tateoka May 1975 A contribution to the taxonomy of the Agrostis mertensii flaccida complex Poaceae in Japan Journal of Plant Research 88 2 65 87 doi 10 1007 bf02491243 S2CID 38029072 Rieger R Michaelis A Green M M 1976 Glossary of Genetics and Cytogenetics Classical and Molecular 4th ed Berlin Heidelberg Springer Verlag p 434 doi 10 1007 978 3 642 96327 8 ISBN 978 3 540 07668 1 S2CID 10163081 Darlington C D Cyril Dean 1937 Recent advances in cytology Philadelphia P Blakiston s son amp co p 60 D Peter Snustad Michael J Simmons 2012 Principles of Genetics 6th edition John Wiley amp Sons p 115 ISBN 978 0 470 90359 9 Otto Sarah P 2007 The Evolutionary Consequences of Polyploidy Cell 131 3 452 462 doi 10 1016 j cell 2007 10 022 ISSN 0092 8674 PMID 17981114 S2CID 10054182 a b Mable B K 2004 Why polyploidy is rarer in animals than in plants myths and mechanisms Biological Journal of the Linnean Society 82 4 453 466 doi 10 1111 j 1095 8312 2004 00332 x ISSN 0024 4066 Madlung A 2012 Polyploidy and its effect on evolutionary success old questions revisited with new tools Heredity 110 2 99 104 doi 10 1038 hdy 2012 79 ISSN 0018 067X PMC 3554449 PMID 23149459 Greek Word Study Tool www perseus tufts edu Greek Word Study Tool www perseus tufts edu Strasburger Eduard Allen Charles E Miyake Kilchi Overten James B 1905 Histologische Beitrage zur Vererbungsfrage Jahrbucher fur Wissenschaftliche Botanik 42 62 Retrieved 2017 03 11 Toepfer Georg 2011 Historisches Worterbuch der Biologie Geschichte und Theorie der biologischen Grundbegriffe Stuttgart J B Metzler sche Verlagsbuchhandlung und Carl Ernst Poeschel Verlag GmbH p 169 ISBN 978 3 476 02317 9 Battaglia E 2009 Caryoneme alternative to chromosome and a new caryological nomenclature PDF Caryologia 62 4 48 David Haig 2008 Homologous versus antithetic alternation of generations and the origin of sporophytes PDF The Botanical Review 74 3 395 418 doi 10 1007 s12229 008 9012 x S2CID 207403936 Bennett Michael D 2004 Biological relevance of polyploidy ecology to genomics Biological Journal of the Linnean Society 82 4 411 423 doi 10 1111 j 1095 8312 2004 00328 x Strasburger E Noll F Schenck H Karsten G 1908 A Textbook of botany 3rd English ed 1908 1 rev with the 8th German ed 1906 2 translation by W H Lang of Lehrbuch der Botanik fur Hochschulen Macmillan London MGI Glossary Mouse Genome Informatics Bar Harbor Maine The Jackson Laboratory Retrieved 6 July 2019 Talking Glossary of Genetic Terms National Human Genome Research Institute Retrieved 6 July 2019 Langlet 1927 Winge 1917 Manton 1932 Fabbri F 1963 Primo supplemento alle tavole cromosomiche delle Pteridophyta di Alberto Chiarugi Caryologia 16 237 335 LECTURE 10 CHANGES IN CHROMOSOME NUMBER PDF Mcb berkeley edu Retrieved 2022 03 10 Gallardo MH Gonzalez CA Cebrian I 2006 Molecular cytogenetics and allotetraploidy in the red vizcacha rat Tympanoctomys barrerae Rodentia Octodontidae Genomics 88 2 214 221 doi 10 1016 j ygeno 2006 02 010 PMID 16580173 Gallardo M H et al 2004 Whole genome duplications in South American desert rodents Octodontidae Biological Journal of the Linnean Society 82 4 443 451 doi 10 1111 j 1095 8312 2004 00331 x Svartman Marta Stone Gary Stanyon Roscoe 2005 Molecular cytogenetics discards polyploidy in mammals Genomics 85 4 425 430 doi 10 1016 j ygeno 2004 12 004 PMID 15780745 Human Retroviruses Archived from the original on 2003 03 30 Retrieved 2008 05 14 Dierschke T Mandakova T Lysak MA Mummenhoff K September 2009 A bicontinental origin of polyploid Australian New Zealand Lepidium species Brassicaceae Evidence from genomic in situ hybridization Annals of Botany 104 4 681 688 doi 10 1093 aob mcp161 PMC 2729636 PMID 19589857 Simon Renny Byfield et al 2010 Flow cytometry and GISH reveal mixed ploidy populations and Spartina nonaploids with genomes of S alterniflora and S maritima origin Annals of Botany 105 4 527 533 doi 10 1093 aob mcq008 PMC 2850792 PMID 20150197 a b Kim E Hummer et al March 2009 Decaploidy in Fragaria iturupensis Rosaceae Am J Bot 96 3 713 716 doi 10 3732 ajb 0800285 PMID 21628226 Talyshinskiĭ G M 1990 Study of the fractional composition of the proteins in the compound fruit of polyploid mulberry Shelk 5 8 10 Fujikawa Yamamoto K 2001 Temperature dependence in Proliferation of tetraploid Meth A cells in comparison with the 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S Averbeck D Petranovic M Lindner AB Radman M 2006 Reassembly of shattered chromosomes in Deinococcus radiodurans Nature 443 7111 569 573 Bibcode 2006Natur 443 569Z doi 10 1038 nature05160 PMID 17006450 S2CID 4412830 Kottemann M Kish A Iloanusi C Bjork S DiRuggiero J 2005 Physiological responses of the halophilic archaeon Halobacterium sp strain NRC1 to desiccation and gamma irradiation PDF Extremophiles 9 3 219 227 doi 10 1007 s00792 005 0437 4 PMID 15844015 S2CID 8391234 Schaechter M Eukaryotic microbes Amsterdam Academic Press 2012 p 217 Edwards MJ et al 1994 Mixoploidy in humans two surviving cases of diploid tetraploid mixoploidy and comparison with diploid triploid mixoploidy Am J Med Genet 52 3 324 330 doi 10 1002 ajmg 1320520314 PMID 7810564 Jarvela IE Salo MK Santavuori P Salonen RK 1993 46 XX 69 XXX diploid triploid mixoploidy with hypothyroidism and precocious puberty J Med Genet 30 11 966 967 doi 10 1136 jmg 30 11 966 PMC 1016611 PMID 8301657 Bender K 1963 Uber die Erzeugung und Entstehung dihaploider Pflanzen bei Solanum tuberosum Zeitschrift fur Pflanzenzuchtung 50 141 166 Nogler G A 1984 Gametophytic apomixis In Embryology of angiosperms Edited by B M Johri Springer Berlin Germany pp 475 518 Pehu E 1996 The current status of knowledge on the cellular biology of potato Potato Research 39 3 429 435 doi 10 1007 bf02357948 S2CID 32122774 Sprague G F Russell W A Penny L H 1960 Mutations affecting quantitative traits in the selfed progeny of double monoploid maize stocks Genetics 45 7 855 866 doi 10 1093 genetics 45 7 855 PMC 1210096 PMID 17247970 Books Elsevier Science amp Technology 1950 Advances in Genetics Academic Press ISBN 978 0 12 017603 8 Cosin Dario J Diaz Novo Marta Fernandez Rosa 2011 Reproduction of Earthworms Sexual Selection and Parthenogenesis Biology of Earthworms Soil Biology Vol 24 pp 69 86 doi 10 1007 978 3 642 14636 7 5 ISBN 978 3 642 14635 0 James B Anderson Linda M Kohn Dikaryons diploids and evolution PDF University of Toronto Archived from the original PDF on 2013 05 27 Retrieved 2012 12 16 Schmid M Evans BJ Bogart JP 2015 Polyploidy in Amphibia Cytogenet Genome Res 145 3 4 315 330 doi 10 1159 000431388 PMID 26112701 Parfrey LW Lahr DJ Katz LA 2008 The dynamic nature of eukaryotic genomes Mol Biol Evol 25 4 787 794 doi 10 1093 molbev msn032 PMC 2933061 PMID 18258610 Qiu Y L Taylor A B McManus H A 2012 Evolution of the life cycle in land plants PDF Journal of Systematics and Evolution 50 3 171 194 doi 10 1111 j 1759 6831 2012 00188 x hdl 2027 42 92043 S2CID 40564254 a href Template Cite journal html title Template Cite journal cite journal a CS1 maint multiple names authors list link Crosland MW Crozier RH 1986 Myrmecia pilosula an Ant with Only One Pair of Chromosomes Science 231 4743 1278 Bibcode 1986Sci 231 1278C doi 10 1126 science 231 4743 1278 PMID 17839565 S2CID 25465053 Archived copy PDF Archived from the original PDF on 2014 02 23 Retrieved 2014 02 18 a href Template Cite web html title Template Cite web cite web a CS1 maint archived copy as title link John O Oberpriller A Mauro 1991 The Development and Regenerative Potential of Cardiac Muscle Taylor amp Francis ISBN 9783718605187 Pandit M K Pocock M J O Kunin W E 2011 03 28 Ploidy influences rarity and invasiveness in plants Journal of Ecology 99 5 1108 1115 doi 10 1111 j 1365 2745 2011 01838 x S2CID 38197332 Gilbert Natasha 2011 04 06 Ecologists find genomic clues to invasive and endangered plants Nature doi 10 1038 news 2011 213 Retrieved 2011 04 07 Nuismer S Otto S P 2004 Host parasite interactions and the evolution of ploidy Proc Natl Acad Sci USA 101 30 11036 11039 Bibcode 2004PNAS 10111036N doi 10 1073 pnas 0403151101 PMC 503737 PMID 15252199 a b Blischak Paul D Mabry Makenzie E Conant Gavin C Pires J Chris 2018 11 02 Integrating Networks Phylogenomics and Population Genomics for the Study of Polyploidy Annual Review of Ecology Evolution and Systematics Annual Reviews 49 1 253 278 doi 10 1146 annurev ecolsys 121415 032302 ISSN 1543 592X S2CID 92205236 The Biology of Solanum tuberosum L Potatoes Canadian Food Inspection Agency 2012 03 05 Sources EditGriffiths A J et al 2000 An introduction to genetic analysis 7th ed W H Freeman New York ISBN 0 7167 3520 2External links EditSome eukaryotic genome scale or genome size databases and other sources which may list the ploidy levels of many organisms Animal genome size database Plant genome size database Fungal genome size database Protist genome scale database of Ensembl Genomes Nuismer S Otto S P 2004 Host parasite interactions and the evolution of ploidy Proc Natl Acad Sci USA 101 30 11036 11039 Bibcode 2004PNAS 10111036N doi 10 1073 pnas 0403151101 PMC 503737 PMID 15252199 Supporting Data Set with information on ploidy level and number of chromosomes of several protists Chromosome number and ploidy mutations YouTube tutorial video Retrieved from https en wikipedia org w index php title Ploidy amp oldid 1135410277 Haploid and monoploid, 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