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Ciliate

The ciliates are a group of alveolates characterized by the presence of hair-like organelles called cilia, which are identical in structure to eukaryotic flagella, but are in general shorter and present in much larger numbers, with a different undulating pattern than flagella. Cilia occur in all members of the group (although the peculiar Suctoria only have them for part of their life cycle) and are variously used in swimming, crawling, attachment, feeding, and sensation.

Ciliate
Temporal range: EdiacaranRecent
Some examples of ciliate diversity. Clockwise from top left: Lacrymaria, Coleps, Stentor, Dileptus, Paramecium
Scientific classification
(unranked): Diaphoretickes
Kingdom: Chromista
Subkingdom: Harosa
Infrakingdom: Halvaria
Superphylum: Alveolata
Phylum: Ciliophora
Doflein, 1901 emend.
Subphyla and classes[1]

See text for subclasses.

Synonyms
  • Ciliata Perty, 1852

Ciliates are an important group of protists, common almost anywhere there is water—in lakes, ponds, oceans, rivers, and soils. About 4,500 unique free-living species have been described, and the potential number of extant species is estimated at 27,000–40,000.[2] Included in this number are many ectosymbiotic and endosymbiotic species, as well as some obligate and opportunistic parasites. Ciliate species range in size from as little as 10 µm in some colpodeans to as much as 4 mm in length in some geleiids, and include some of the most morphologically complex protozoans.[3][4]

In most systems of taxonomy, "Ciliophora" is ranked as a phylum[5] under any of several kingdoms, including Chromista,[6] Protista[7] or Protozoa.[8] In some older systems of classification, such as the influential taxonomic works of Alfred Kahl, ciliated protozoa are placed within the class "Ciliata"[9][10] (a term which can also refer to a genus of fish). In the taxonomic scheme endorsed by the International Society of Protistologists, which eliminates formal rank designations such as "phylum" and "class", "Ciliophora" is an unranked taxon within Alveolata.[11][12]

Cell structure

 
Diagram of the ciliate Paramecium

Nuclei

Unlike most other eukaryotes, ciliates have two different sorts of nuclei: a tiny, diploid micronucleus (the "generative nucleus", which carries the germline of the cell), and a large, ampliploid macronucleus (the "vegetative nucleus", which takes care of general cell regulation, expressing the phenotype of the organism).[13][14] The latter is generated from the micronucleus by amplification of the genome and heavy editing. The micronucleus passes its genetic material to offspring, but does not express its genes. The macronucleus provides the small nuclear RNA for vegetative growth.[15][14]

Division of the macronucleus occurs in most ciliate species, apart from those in class Karyorelictea, whose macronuclei are replaced every time the cell divides.[16] Macronuclear division is accomplished by amitosis, and the segregation of the chromosomes occurs by a process whose mechanism is unknown.[14] After a certain number of generations (200–350, in Paramecium aurelia, and as many as 1,500 in Tetrahymena[16]) the cell shows signs of aging, and the macronuclei must be regenerated from the micronuclei. Usually, this occurs following conjugation, after which a new macronucleus is generated from the post-conjugal micronucleus.[14]

Cytoplasm

Food vacuoles are formed through phagocytosis and typically follow a particular path through the cell as their contents are digested and broken down by lysosomes so the substances the vacuole contains are then small enough to diffuse through the membrane of the food vacuole into the cell. Anything left in the food vacuole by the time it reaches the cytoproct (anal pore) is discharged by exocytosis. Most ciliates also have one or more prominent contractile vacuoles, which collect water and expel it from the cell to maintain osmotic pressure, or in some function to maintain ionic balance. In some genera, such as Paramecium, these have a distinctive star shape, with each point being a collecting tube.

Specialized structures in ciliates

Mostly, body cilia are arranged in mono- and dikinetids, which respectively include one and two kinetosomes (basal bodies), each of which may support a cilium. These are arranged into rows called kineties, which run from the anterior to posterior of the cell. The body and oral kinetids make up the infraciliature, an organization unique to the ciliates and important in their classification, and include various fibrils and microtubules involved in coordinating the cilia. In some forms there are also body polykinetids, for instance, among the spirotrichs where they generally form bristles called cirri.

The infraciliature is one of the main components of the cell cortex. Others are the alveoli, small vesicles under the cell membrane that are packed against it to form a pellicle maintaining the cell's shape, which varies from flexible and contractile to rigid. Numerous mitochondria and extrusomes are also generally present. The presence of alveoli, the structure of the cilia, the form of mitosis and various other details indicate a close relationship between the ciliates, Apicomplexa, and dinoflagellates. These superficially dissimilar groups make up the alveolates.

Feeding

Most ciliates are heterotrophs, feeding on smaller organisms, such as bacteria and algae, and detritus swept into the oral groove (mouth) by modified oral cilia. This usually includes a series of membranelles to the left of the mouth and a paroral membrane to its right, both of which arise from polykinetids, groups of many cilia together with associated structures. The food is moved by the cilia through the mouth pore into the gullet, which forms food vacuoles.

The ciliate Halteria has been observed to feed on chloroviruses.[17]

Feeding techniques vary considerably, however. Some ciliates are mouthless and feed by absorption (osmotrophy), while others are predatory and feed on other protozoa and in particular on other ciliates. Some ciliates parasitize animals, although only one species, Balantidium coli, is known to cause disease in humans.[18]

Reproduction and sexual phenomena

 
Most ciliates divide transversally, but other kinds of binary fission occur in some species.

Reproduction

Ciliates reproduce asexually, by various kinds of fission.[16] During fission, the micronucleus undergoes mitosis and the macronucleus elongates and undergoes amitosis (except among the Karyorelictean ciliates, whose macronuclei do not divide). The cell then divides in two, and each new cell obtains a copy of the micronucleus and the macronucleus.

 
Ciliate undergoing the last processes of binary fission

Typically, the cell is divided transversally, with the anterior half of the ciliate (the proter) forming one new organism, and the posterior half (the opisthe) forming another. However, other types of fission occur in some ciliate groups. These include budding (the emergence of small ciliated offspring, or "swarmers", from the body of a mature parent); strobilation (multiple divisions along the cell body, producing a chain of new organisms); and palintomy (multiple fissions, usually within a cyst).[19]

Fission may occur spontaneously, as part of the vegetative cell cycle. Alternatively, it may proceed as a result of self-fertilization (autogamy),[20] or it may follow conjugation, a sexual phenomenon in which ciliates of compatible mating types exchange genetic material. While conjugation is sometimes described as a form of reproduction, it is not directly connected with reproductive processes, and does not directly result in an increase in the number of individual ciliates or their progeny.[21]

Conjugation

Overview

Ciliate conjugation is a sexual phenomenon that results in genetic recombination and nuclear reorganization within the cell.[21][19] During conjugation, two ciliates of a compatible mating type form a bridge between their cytoplasms. The micronuclei undergo meiosis, the macronuclei disappear, and haploid micronuclei are exchanged over the bridge. In some ciliates (peritrichs, chonotrichs and some suctorians), conjugating cells become permanently fused, and one conjugant is absorbed by the other.[18][22] In most ciliate groups, however, the cells separate after conjugation, and both form new macronuclei from their micronuclei.[23] Conjugation and autogamy are always followed by fission.[19]

In many ciliates, such as Paramecium, conjugating partners (gamonts) are similar or indistinguishable in size and shape. This is referred to as "isogamontic" conjugation. In some groups, partners are different in size and shape. This is referred to as "anisogamontic" conjugation. In sessile peritrichs, for instance, one sexual partner (the microconjugant) is small and mobile, while the other (macroconjugant) is large and sessile.[21]

Stages of conjugation
 
Stages of conjugation in Paramecium caudatum

In Paramecium caudatum, the stages of conjugation are as follows (see diagram at right):

  1. Compatible mating strains meet and partly fuse
  2. The micronuclei undergo meiosis, producing four haploid micronuclei per cell.
  3. Three of these micronuclei disintegrate. The fourth undergoes mitosis.
  4. The two cells exchange a micronucleus.
  5. The cells then separate.
  6. The micronuclei in each cell fuse, forming a diploid micronucleus.
  7. Mitosis occurs three times, giving rise to eight micronuclei.
  8. Four of the new micronuclei transform into macronuclei, and the old macronucleus disintegrates.
  9. Binary fission occurs twice, yielding four identical daughter cells.

DNA rearrangements (gene scrambling)

Ciliates contain two types of nuclei: somatic "macronucleus" and the germline "micronucleus". Only the DNA in the micronucleus is passed on during sexual reproduction (conjugation). On the other hand, only the DNA in the macronucleus is actively expressed and results in the phenotype of the organism. Macronuclear DNA is derived from micronuclear DNA by amazingly extensive DNA rearrangement and amplification.

 
Development of the Oxytricha macronuclear genome from micronuclear genome

The macronucleus begins as a copy of the micronucleus. The micronuclear chromosomes are fragmented into many smaller pieces and amplified to give many copies. The resulting macronuclear chromosomes often contain only a single gene. In Tetrahymena, the micronucleus has 10 chromosomes (five per haploid genome), while the macronucleus has over 20,000 chromosomes.[24]

In addition, the micronuclear genes are interrupted by numerous "internal eliminated sequences" (IESs). During development of the macronucleus, IESs are deleted and the remaining gene segments, macronuclear destined sequences (MDSs), are spliced together to give the operational gene. Tetrahymena has about 6,000 IESs and about 15% of micronuclear DNA is eliminated during this process. The process is guided by small RNAs and epigenetic chromatin marks.[24]

In spirotrich ciliates (such as Oxytricha), the process is even more complex due to "gene scrambling": the MDSs in the micronucleus are often in different order and orientation from that in the macronuclear gene, and so in addition to deletion, DNA inversion and translocation are required for "unscrambling". This process is guided by long RNAs derived from the parental macronucleus. More than 95% of micronuclear DNA is eliminated during spirotrich macronuclear development.[24]

Aging

ln clonal populations of Paramecium, aging occurs over successive generations leading to a gradual loss of vitality, unless the cell line is revitalized by conjugation or autogamy. In Paramecium tetraurelia, the clonally aging line loses vitality and expires after about 200 fissions, if the cell line is not rejuvenated by conjugation or self-fertilization. The basis for clonal aging was clarified by the transplantation experiments of Aufderheide in 1986[25] who demonstrated that the macronucleus, rather than the cytoplasm, is responsible for clonal aging. Additional experiments by Smith-Sonneborn,[26] Holmes and Holmes,[27] and Gilley and Blackburn[28] demonstrated that, during clonal aging, DNA damage increases dramatically. Thus, DNA damage appears to be the cause of aging in P. tetraurelia.

Fossil record

Until recently, the oldest ciliate fossils known were tintinnids from the Ordovician period. In 2007, Li et al. published a description of fossil ciliates from the Doushantuo Formation, about 580 million years ago, in the Ediacaran period. These included two types of tintinnids and a possible ancestral suctorian.[29] A fossil Vorticella has been discovered inside a leech cocoon from the Triassic period, about 200 million years ago.[30]

Phylogeny

According to the 2016 phylogenetic analysis,[1] Mesodiniea is consistently found as the sister group to all other ciliates. Additionally, two big sub-groups are distinguished inside subphylum Intramacronucleata: SAL (Spirotrichea+Armophorea+Litostomatea) and CONthreeP or Ventrata (Colpodea+Oligohymenophorea+Nassophorea+Phyllopharyngea+Plagiopylea+Prostomatea).[1] The class Protocruziea is found as the sister group to Ventrata/CONthreeP. The class Cariacotrichea was excluded from the analysis, but it was originally established as part of Intramacronucleata[1].
The odontostomatids were identified in 2018[31] as its own class Odontostomatea, related to Armophorea.

Classification

Several different classification schemes have been proposed for the ciliates. The following scheme is based on a molecular phylogenetic analysis of up to four genes from 152 species representing 110 families:[1]

Subphylum Postciliodesmatophora

Subphylum Intramacronucleata

Other

Some old classifications included Opalinidae in the ciliates. The fundamental difference between multiciliate flagellates (e.g., hemimastigids, Stephanopogon, Multicilia, opalines) and ciliates is the presence of macronuclei in ciliates alone.[32]

Pathogenicity

The only member of the ciliate phylum known to be pathogenic to humans is Balantidium coli,[33][34] which causes the disease balantidiasis. It is not pathogenic to the domestic pig, the primary reservoir of this pathogen.[35]

References

  1. ^ a b c d e Gao, Feng; Warren, Alan; Zhang, Qianqian; Gong, Jun; Miao, Miao; Sun, Ping; Xu, Dapeng; Huang, Jie; Yi, Zhenzhen (2016-04-29). "The All-Data-Based Evolutionary Hypothesis of Ciliated Protists with a Revised Classification of the Phylum Ciliophora (Eukaryota, Alveolata)". Scientific Reports. 6: 24874. Bibcode:2016NatSR...624874G. doi:10.1038/srep24874. ISSN 2045-2322. PMC 4850378. PMID 27126745.
  2. ^ Foissner, W.; Hawksworth, David, eds. (2009). Protist Diversity and Geographical Distribution. Topics in Biodiversity and Conservation. Vol. 8. Springer Netherlands. p. 111. doi:10.1007/978-90-481-2801-3. ISBN 9789048128006.
  3. ^ Nielsen, Torkel Gissel; Kiørboe, Thomas (1994). "Regulation of zooplankton biomass and production in a temperate, coastal ecosystem. 2. Ciliates". Limnology and Oceanography. 39 (3): 508–519. Bibcode:1994LimOc..39..508N. doi:10.4319/lo.1994.39.3.0508.
  4. ^ Lynn, Denis (2008). The Ciliated Protozoa 3rd Edition. Springer. pp. 129. ISBN 978-1-4020-8238-2.
  5. ^ "ITIS Report". Integrated Taxonomic Information System. Retrieved 11 December 2014.
  6. ^ Cavalier-Smith, Thomas (2018-01-01). "Kingdom Chromista and its eight phyla: a new synthesis emphasising periplastid protein targeting, cytoskeletal and periplastid evolution, and ancient divergences". Protoplasma. 255 (1): 297–357. doi:10.1007/s00709-017-1147-3. ISSN 1615-6102. PMC 5756292. PMID 28875267.
  7. ^ Yi Z, Song W, Clamp JC, Chen Z, Gao S, Zhang Q (December 2008). "Reconsideration of systematic relationships within the order Euplotida (Protista, Ciliophora) using new sequences of the gene coding for small-subunit rRNA and testing the use of combined data sets to construct phylogenies of the Diophrys-complex". Mol. Phylogenet. Evol. 50 (3): 599–607. doi:10.1016/j.ympev.2008.12.006. PMID 19121402.
  8. ^ Miao M, Song W, Chen Z, et al. (2007). "A unique euplotid ciliate, Gastrocirrhus (Protozoa, Ciliophora): assessment of its phylogenetic position inferred from the small subunit rRNA gene sequence". J. Eukaryot. Microbiol. 54 (4): 371–8. doi:10.1111/j.1550-7408.2007.00271.x. PMID 17669163. S2CID 25977768.
  9. ^ Alfred Kahl (1930). Urtiere oder Protozoa I: Wimpertiere oder Ciliata -- Volume I General Section And Prostomata.
  10. ^ "Medical Definition of CILIATA". www.merriam-webster.com. Retrieved 2017-12-22.
  11. ^ Adl, Sina M.; Bass, David; Lane, Christopher E.; Lukeš, Julius; Schoch, Conrad L.; Smirnov, Alexey; Agatha, Sabine; Berney, Cedric; Brown, Matthew W.; Burki, Fabien; Cárdenas, Paco (2019). "Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes". Journal of Eukaryotic Microbiology. 66 (1): 4–119. doi:10.1111/jeu.12691. ISSN 1550-7408. PMC 6492006. PMID 30257078.
  12. ^ Adl, Sina M.; et al. (2005). "The new higher level classification of eukaryotes with emphasis on the taxonomy of protists". Journal of Eukaryotic Microbiology. 52 (5): 399–451. doi:10.1111/j.1550-7408.2005.00053.x. PMID 16248873.
  13. ^ Raikov, I.B. (1969). "The Macronucleus of Ciliates". Research in Protozoology. 3: 4–115. ISBN 9781483186146.
  14. ^ a b c d Archibald, John M.; Simpson, Alastair G. B.; Slamovits, Claudio H., eds. (2017). Handbook of the Protists (2 ed.). Springer International Publishing. p. 691. ISBN 978-3-319-28147-6.
  15. ^ Prescott, D M (June 1994). "The DNA of ciliated protozoa". Microbiological Reviews. 58 (2): 233–267. doi:10.1128/mr.58.2.233-267.1994. ISSN 0146-0749. PMC 372963. PMID 8078435.
  16. ^ a b c H., Lynn, Denis (2008). The ciliated protozoa: characterization, classification, and guide to the literature. New York: Springer. p. 324. ISBN 9781402082382. OCLC 272311632.
  17. ^ DeLong, John P.; Van Etten, James L.; Al-Ameeli, Zeina; Agarkova, Irina V.; Dunigan, David D. (2023-01-03). "The consumption of viruses returns energy to food chains". Proceedings of the National Academy of Sciences. 120 (1): e2215000120. Bibcode:2023PNAS..12015000D. doi:10.1073/pnas.2215000120. PMID 36574690.
  18. ^ a b Lynn, Denis (2008). The Ciliated Protozoa: Characterization, Classification, and Guide to the Literature (3 ed.). Springer. pp. 58. ISBN 978-1-4020-8238-2. 1007/978-1-4020-8239-9
  19. ^ a b c H., Lynn, Denis (2008). The ciliated protozoa: characterization, classification, and guide to the literature. New York: Springer. p. 23. ISBN 9781402082382. OCLC 272311632.
  20. ^ Berger JD (October 1986). "Autogamy in Paramecium. Cell cycle stage-specific commitment to meiosis". Exp. Cell Res. 166 (2): 475–85. doi:10.1016/0014-4827(86)90492-1. PMID 3743667.
  21. ^ a b c Raikov, I.B (1972). "Nuclear phenomena during conjugation and autogamy in ciliates". Research in Protozoology. 4: 149.
  22. ^ Finley, Harold E. "The conjugation of Vorticella microstoma." Transactions of the American Microscopical Society (1943): 97-121.
  23. ^ "Introduction to the Ciliata". Retrieved 2009-01-16.
  24. ^ a b c Mochizuki, Kazufumi (2010). "DNA rearrangements directed by non-coding RNAs in ciliates". Wiley Interdisciplinary Reviews: RNA. 1 (3): 376–387. doi:10.1002/wrna.34. PMC 3746294. PMID 21956937.
  25. ^ Aufderheide, Karl J. (1986). "Clonal aging in Paramecium tetraurelia. II. Evidence of functional changes in the macronucleus with age". Mechanisms of Ageing and Development. 37 (3): 265–279. doi:10.1016/0047-6374(86)90044-8. PMID 3553762. S2CID 28320562.
  26. ^ Smith-Sonneborn, J. (1979). "DNA repair and longevity assurance in Paramecium tetraurelia". Science. 203 (4385): 1115–1117. Bibcode:1979Sci...203.1115S. doi:10.1126/science.424739. PMID 424739.
  27. ^ Holmes, George E.; Holmes, Norreen R. (July 1986). "Accumulation of DNA damages in aging Paramecium tetraurelia". Molecular and General Genetics. 204 (1): 108–114. doi:10.1007/bf00330196. PMID 3091993. S2CID 11992591.
  28. ^ Gilley, David; Blackburn, Elizabeth H. (1994). "Lack of telomere shortening during senescence in Paramecium" (PDF). Proceedings of the National Academy of Sciences of the United States of America. 91 (5): 1955–1958. Bibcode:1994PNAS...91.1955G. doi:10.1073/pnas.91.5.1955. PMC 43283. PMID 8127914.
  29. ^ Li, C.-W.; et al. (2007). "Ciliated protozoans from the Precambrian Doushantuo Formation, Wengan, South China". Geological Society, London, Special Publications. 286 (1): 151–156. Bibcode:2007GSLSP.286..151L. doi:10.1144/SP286.11. S2CID 129584945.
  30. ^ Bomfleur, Benjamin; Kerp, Hans; Taylor, Thomas N.; Moestrup, Øjvind; Taylor, Edith L. (2012-12-18). "Triassic leech cocoon from Antarctica contains fossil bell animal". Proceedings of the National Academy of Sciences of the United States of America. 109 (51): 20971–20974. Bibcode:2012PNAS..10920971B. doi:10.1073/pnas.1218879109. ISSN 1091-6490. PMC 3529092. PMID 23213234.
  31. ^ a b Fernandes, Noemi M.; Vizzoni, Vinicius F.; Borges, Bárbara do N.; Soares, Carlos A.G.; da Silva-Neto, Inácio D.; Paiva, Thiago da S. (2018), "Molecular phylogeny and comparative morphology indicate that odontostomatids (Alveolata, Ciliophora) form a distinct class-level taxon related to Armophorea", Molecular Phylogenetics and Evolution, 126: 382–389, doi:10.1016/j.ympev.2018.04.026, ISSN 1055-7903, PMID 29679715, S2CID 5032558
  32. ^ Cavalier-Smith, T. (2000). Flagellate megaevolution: the basis for eukaryote diversification. In: Leadbeater, B.S.C., Green, J.C. (eds.). The Flagellates. Unity, diversity and evolution. London: Taylor and Francis, pp. 361-390, p. 362, [1].
  33. ^ "Balantidiasis". DPDx — Laboratory Identification of Parasitic Diseases of Public Health Concern. Centers for Disease Control and Prevention. 2013.
  34. ^ Ramachandran, Ambili (23 May 2003). "Introduction". The Parasite: Balantidium coli The Disease: Balantidiasis. ParaSite. Stanford University.
  35. ^ Schister, Frederick L. and Lynn Ramirez-Avila (October 2008). "Current World Status of Balantidium coli". Clinical Microbiology Reviews. 21 (4): 626–638. doi:10.1128/CMR.00021-08. PMC 2570149. PMID 18854484.

Further reading

  • Lynn, Denis H. (2008). The ciliated protozoa: characterization, classification, and guide to the literature. New York: Springer. ISBN 9781402082382. OCLC 272311632.
  • Hausmann, Klaus; Bradbury, Phyllis C., eds. (1996). Ciliates: cells as organisms. Stuttgart: Gustav Fischer Verlag. ISBN 978-3437250361. OCLC 34782787.
  • Lee, John J.; Leedale, Gordon F.; Bradbury, Phyllis C., eds. (2000). An illustrated guide to the protozoa: organisms traditionally referred to as protozoa, or newly discovered groups (2nd ed.). Lawrence, KS: Society of Protozoologists. ISBN 9781891276224. OCLC 49191284.

External links

  •   Media related to Ciliophora at Wikimedia Commons

ciliate, this, article, about, protozoan, phylum, ciliophora, type, ciliate, cells, general, cells, type, leaf, margin, glossary, leaf, morphology, edge, ciliates, group, alveolates, characterized, presence, hair, like, organelles, called, cilia, which, identi. This article is about the protozoan phylum Ciliophora For the type of ciliate cells in general see Ciliate cells For the type of leaf margin see Glossary of leaf morphology Edge The ciliates are a group of alveolates characterized by the presence of hair like organelles called cilia which are identical in structure to eukaryotic flagella but are in general shorter and present in much larger numbers with a different undulating pattern than flagella Cilia occur in all members of the group although the peculiar Suctoria only have them for part of their life cycle and are variously used in swimming crawling attachment feeding and sensation CiliateTemporal range Ediacaran Recent PreꞒ Ꞓ O S D C P T J K Pg NSome examples of ciliate diversity Clockwise from top left Lacrymaria Coleps Stentor Dileptus ParameciumScientific classification unranked DiaphoretickesKingdom ChromistaSubkingdom HarosaInfrakingdom HalvariaSuperphylum AlveolataPhylum CiliophoraDoflein 1901 emend Subphyla and classes 1 Postciliodesmatophora Heterotrichea Karyorelictea Intramacronucleata Armophorea Litostomatea Colpodea Nassophorea Phyllopharyngea Prostomatea Plagiopylea Oligohymenophorea Protocruziea Spirotrichea Cariacotrichea Muranotrichea ParablepharismeaSee text for subclasses SynonymsCiliata Perty 1852Ciliates are an important group of protists common almost anywhere there is water in lakes ponds oceans rivers and soils About 4 500 unique free living species have been described and the potential number of extant species is estimated at 27 000 40 000 2 Included in this number are many ectosymbiotic and endosymbiotic species as well as some obligate and opportunistic parasites Ciliate species range in size from as little as 10 µm in some colpodeans to as much as 4 mm in length in some geleiids and include some of the most morphologically complex protozoans 3 4 In most systems of taxonomy Ciliophora is ranked as a phylum 5 under any of several kingdoms including Chromista 6 Protista 7 or Protozoa 8 In some older systems of classification such as the influential taxonomic works of Alfred Kahl ciliated protozoa are placed within the class Ciliata 9 10 a term which can also refer to a genus of fish In the taxonomic scheme endorsed by the International Society of Protistologists which eliminates formal rank designations such as phylum and class Ciliophora is an unranked taxon within Alveolata 11 12 Contents 1 Cell structure 1 1 Nuclei 1 2 Cytoplasm 1 3 Specialized structures in ciliates 2 Feeding 3 Reproduction and sexual phenomena 3 1 Reproduction 3 2 Conjugation 4 DNA rearrangements gene scrambling 5 Aging 6 Fossil record 7 Phylogeny 8 Classification 8 1 Subphylum Postciliodesmatophora 8 2 Subphylum Intramacronucleata 8 3 Other 9 Pathogenicity 10 References 11 Further reading 12 External linksCell structure Edit Diagram of the ciliate Paramecium Nuclei Edit Unlike most other eukaryotes ciliates have two different sorts of nuclei a tiny diploid micronucleus the generative nucleus which carries the germline of the cell and a large ampliploid macronucleus the vegetative nucleus which takes care of general cell regulation expressing the phenotype of the organism 13 14 The latter is generated from the micronucleus by amplification of the genome and heavy editing The micronucleus passes its genetic material to offspring but does not express its genes The macronucleus provides the small nuclear RNA for vegetative growth 15 14 Division of the macronucleus occurs in most ciliate species apart from those in class Karyorelictea whose macronuclei are replaced every time the cell divides 16 Macronuclear division is accomplished by amitosis and the segregation of the chromosomes occurs by a process whose mechanism is unknown 14 After a certain number of generations 200 350 in Paramecium aurelia and as many as 1 500 in Tetrahymena 16 the cell shows signs of aging and the macronuclei must be regenerated from the micronuclei Usually this occurs following conjugation after which a new macronucleus is generated from the post conjugal micronucleus 14 Cytoplasm Edit Food vacuoles are formed through phagocytosis and typically follow a particular path through the cell as their contents are digested and broken down by lysosomes so the substances the vacuole contains are then small enough to diffuse through the membrane of the food vacuole into the cell Anything left in the food vacuole by the time it reaches the cytoproct anal pore is discharged by exocytosis Most ciliates also have one or more prominent contractile vacuoles which collect water and expel it from the cell to maintain osmotic pressure or in some function to maintain ionic balance In some genera such as Paramecium these have a distinctive star shape with each point being a collecting tube Specialized structures in ciliates Edit Mostly body cilia are arranged in mono and dikinetids which respectively include one and two kinetosomes basal bodies each of which may support a cilium These are arranged into rows called kineties which run from the anterior to posterior of the cell The body and oral kinetids make up the infraciliature an organization unique to the ciliates and important in their classification and include various fibrils and microtubules involved in coordinating the cilia In some forms there are also body polykinetids for instance among the spirotrichs where they generally form bristles called cirri The infraciliature is one of the main components of the cell cortex Others are the alveoli small vesicles under the cell membrane that are packed against it to form a pellicle maintaining the cell s shape which varies from flexible and contractile to rigid Numerous mitochondria and extrusomes are also generally present The presence of alveoli the structure of the cilia the form of mitosis and various other details indicate a close relationship between the ciliates Apicomplexa and dinoflagellates These superficially dissimilar groups make up the alveolates Feeding EditMost ciliates are heterotrophs feeding on smaller organisms such as bacteria and algae and detritus swept into the oral groove mouth by modified oral cilia This usually includes a series of membranelles to the left of the mouth and a paroral membrane to its right both of which arise from polykinetids groups of many cilia together with associated structures The food is moved by the cilia through the mouth pore into the gullet which forms food vacuoles The ciliate Halteria has been observed to feed on chloroviruses 17 Feeding techniques vary considerably however Some ciliates are mouthless and feed by absorption osmotrophy while others are predatory and feed on other protozoa and in particular on other ciliates Some ciliates parasitize animals although only one species Balantidium coli is known to cause disease in humans 18 Reproduction and sexual phenomena Edit Most ciliates divide transversally but other kinds of binary fission occur in some species Reproduction EditCiliates reproduce asexually by various kinds of fission 16 During fission the micronucleus undergoes mitosis and the macronucleus elongates and undergoes amitosis except among the Karyorelictean ciliates whose macronuclei do not divide The cell then divides in two and each new cell obtains a copy of the micronucleus and the macronucleus Ciliate undergoing the last processes of binary fission Typically the cell is divided transversally with the anterior half of the ciliate the proter forming one new organism and the posterior half the opisthe forming another However other types of fission occur in some ciliate groups These include budding the emergence of small ciliated offspring or swarmers from the body of a mature parent strobilation multiple divisions along the cell body producing a chain of new organisms and palintomy multiple fissions usually within a cyst 19 Fission may occur spontaneously as part of the vegetative cell cycle Alternatively it may proceed as a result of self fertilization autogamy 20 or it may follow conjugation a sexual phenomenon in which ciliates of compatible mating types exchange genetic material While conjugation is sometimes described as a form of reproduction it is not directly connected with reproductive processes and does not directly result in an increase in the number of individual ciliates or their progeny 21 Conjugation Edit OverviewCiliate conjugation is a sexual phenomenon that results in genetic recombination and nuclear reorganization within the cell 21 19 During conjugation two ciliates of a compatible mating type form a bridge between their cytoplasms The micronuclei undergo meiosis the macronuclei disappear and haploid micronuclei are exchanged over the bridge In some ciliates peritrichs chonotrichs and some suctorians conjugating cells become permanently fused and one conjugant is absorbed by the other 18 22 In most ciliate groups however the cells separate after conjugation and both form new macronuclei from their micronuclei 23 Conjugation and autogamy are always followed by fission 19 In many ciliates such as Paramecium conjugating partners gamonts are similar or indistinguishable in size and shape This is referred to as isogamontic conjugation In some groups partners are different in size and shape This is referred to as anisogamontic conjugation In sessile peritrichs for instance one sexual partner the microconjugant is small and mobile while the other macroconjugant is large and sessile 21 Stages of conjugation Stages of conjugation in Paramecium caudatumIn Paramecium caudatum the stages of conjugation are as follows see diagram at right Compatible mating strains meet and partly fuse The micronuclei undergo meiosis producing four haploid micronuclei per cell Three of these micronuclei disintegrate The fourth undergoes mitosis The two cells exchange a micronucleus The cells then separate The micronuclei in each cell fuse forming a diploid micronucleus Mitosis occurs three times giving rise to eight micronuclei Four of the new micronuclei transform into macronuclei and the old macronucleus disintegrates Binary fission occurs twice yielding four identical daughter cells DNA rearrangements gene scrambling EditCiliates contain two types of nuclei somatic macronucleus and the germline micronucleus Only the DNA in the micronucleus is passed on during sexual reproduction conjugation On the other hand only the DNA in the macronucleus is actively expressed and results in the phenotype of the organism Macronuclear DNA is derived from micronuclear DNA by amazingly extensive DNA rearrangement and amplification Development of the Oxytricha macronuclear genome from micronuclear genome The macronucleus begins as a copy of the micronucleus The micronuclear chromosomes are fragmented into many smaller pieces and amplified to give many copies The resulting macronuclear chromosomes often contain only a single gene In Tetrahymena the micronucleus has 10 chromosomes five per haploid genome while the macronucleus has over 20 000 chromosomes 24 In addition the micronuclear genes are interrupted by numerous internal eliminated sequences IESs During development of the macronucleus IESs are deleted and the remaining gene segments macronuclear destined sequences MDSs are spliced together to give the operational gene Tetrahymena has about 6 000 IESs and about 15 of micronuclear DNA is eliminated during this process The process is guided by small RNAs and epigenetic chromatin marks 24 In spirotrich ciliates such as Oxytricha the process is even more complex due to gene scrambling the MDSs in the micronucleus are often in different order and orientation from that in the macronuclear gene and so in addition to deletion DNA inversion and translocation are required for unscrambling This process is guided by long RNAs derived from the parental macronucleus More than 95 of micronuclear DNA is eliminated during spirotrich macronuclear development 24 Aging Editln clonal populations of Paramecium aging occurs over successive generations leading to a gradual loss of vitality unless the cell line is revitalized by conjugation or autogamy In Paramecium tetraurelia the clonally aging line loses vitality and expires after about 200 fissions if the cell line is not rejuvenated by conjugation or self fertilization The basis for clonal aging was clarified by the transplantation experiments of Aufderheide in 1986 25 who demonstrated that the macronucleus rather than the cytoplasm is responsible for clonal aging Additional experiments by Smith Sonneborn 26 Holmes and Holmes 27 and Gilley and Blackburn 28 demonstrated that during clonal aging DNA damage increases dramatically Thus DNA damage appears to be the cause of aging in P tetraurelia Fossil record EditUntil recently the oldest ciliate fossils known were tintinnids from the Ordovician period In 2007 Li et al published a description of fossil ciliates from the Doushantuo Formation about 580 million years ago in the Ediacaran period These included two types of tintinnids and a possible ancestral suctorian 29 A fossil Vorticella has been discovered inside a leech cocoon from the Triassic period about 200 million years ago 30 Phylogeny EditAccording to the 2016 phylogenetic analysis 1 Mesodiniea is consistently found as the sister group to all other ciliates Additionally two big sub groups are distinguished inside subphylum Intramacronucleata SAL Spirotrichea Armophorea Litostomatea and CONthreeP or Ventrata Colpodea Oligohymenophorea Nassophorea Phyllopharyngea Plagiopylea Prostomatea 1 The class Protocruziea is found as the sister group to Ventrata CONthreeP The class Cariacotrichea was excluded from the analysis but it was originally established as part of Intramacronucleata 1 The odontostomatids were identified in 2018 31 as its own class Odontostomatea related to Armophorea Ciliophora MesodinieaPostciliodesmatophora KaryorelicteaHeterotricheaIntramacronucleata SAL OdontostomateaArmophoreaLitostomateaSpirotricheaCariacotricheaProtocruzieaCONthreeP DiscotrichidaColpodeaNassophoreaPhyllopharyngeaOligohymenophoreaProstomateaPlagiopyleaClassification EditFurther information Wikispecies Ciliophora Stentor roeselii Several different classification schemes have been proposed for the ciliates The following scheme is based on a molecular phylogenetic analysis of up to four genes from 152 species representing 110 families 1 Class Mesodiniea e g Mesodinium Subphylum Postciliodesmatophora Edit Class Heterotrichea e g Stentor Class KaryorelicteaSubphylum Intramacronucleata Edit Oxytricha trifallax Class Armophorea Class Odontostomatea 31 e g Discomorphella Saprodinium Class Cariacotrichea only one species Cariacothrix caudata Class Muranotrichea Class Parablepharismea Class Colpodea e g Colpoda Class Litostomatea Subclass Haptoria e g Didinium Subclass Rhynchostomatia Subclass Trichostomatia e g Balantidium Class Nassophorea Class Phyllopharyngea Subclass Chonotrichia Subclass Cyrtophoria Subclass Rhynchodia Subclass Suctoria e g Podophyra Subclass Synhymenia Class Oligohymenophorea Subclass Apostomatia Subclass Astomatia Subclass Hymenostomatia e g Tetrahymena Subclass Peniculia e g Paramecium Subclass Peritrichia e g Vorticella Subclass Scuticociliatia Class Plagiopylea Class Prostomatea e g Coleps Class Protocruziea Class Spirotrichea Subclass Choreotrichia Subclass Euplotia Subclass Hypotrichia Subclass Licnophoria Subclass Oligotrichia Subclass Phacodiniidea Subclass ProtohypotrichiaOther Edit Some old classifications included Opalinidae in the ciliates The fundamental difference between multiciliate flagellates e g hemimastigids Stephanopogon Multicilia opalines and ciliates is the presence of macronuclei in ciliates alone 32 Pathogenicity EditThe only member of the ciliate phylum known to be pathogenic to humans is Balantidium coli 33 34 which causes the disease balantidiasis It is not pathogenic to the domestic pig the primary reservoir of this pathogen 35 References Edit a b c d e Gao Feng Warren Alan Zhang Qianqian Gong Jun Miao Miao Sun Ping Xu Dapeng Huang Jie Yi Zhenzhen 2016 04 29 The All Data Based Evolutionary Hypothesis of Ciliated Protists with a Revised Classification of the Phylum Ciliophora Eukaryota Alveolata Scientific Reports 6 24874 Bibcode 2016NatSR 624874G doi 10 1038 srep24874 ISSN 2045 2322 PMC 4850378 PMID 27126745 Foissner W Hawksworth David eds 2009 Protist Diversity and Geographical Distribution Topics in Biodiversity and Conservation Vol 8 Springer Netherlands p 111 doi 10 1007 978 90 481 2801 3 ISBN 9789048128006 Nielsen Torkel Gissel Kiorboe Thomas 1994 Regulation of zooplankton biomass and production in a temperate coastal ecosystem 2 Ciliates Limnology and Oceanography 39 3 508 519 Bibcode 1994LimOc 39 508N doi 10 4319 lo 1994 39 3 0508 Lynn Denis 2008 The Ciliated Protozoa 3rd Edition Springer pp 129 ISBN 978 1 4020 8238 2 ITIS Report Integrated Taxonomic Information System Retrieved 11 December 2014 Cavalier Smith Thomas 2018 01 01 Kingdom Chromista and its eight phyla a new synthesis emphasising periplastid protein targeting cytoskeletal and periplastid evolution and ancient divergences Protoplasma 255 1 297 357 doi 10 1007 s00709 017 1147 3 ISSN 1615 6102 PMC 5756292 PMID 28875267 Yi Z Song W Clamp JC Chen Z Gao S Zhang Q December 2008 Reconsideration of systematic relationships within the order Euplotida Protista Ciliophora using new sequences of the gene coding for small subunit rRNA and testing the use of combined data sets to construct phylogenies of the Diophrys complex Mol Phylogenet Evol 50 3 599 607 doi 10 1016 j ympev 2008 12 006 PMID 19121402 Miao M Song W Chen Z et al 2007 A unique euplotid ciliate Gastrocirrhus Protozoa Ciliophora assessment of its phylogenetic position inferred from the small subunit rRNA gene sequence J Eukaryot Microbiol 54 4 371 8 doi 10 1111 j 1550 7408 2007 00271 x PMID 17669163 S2CID 25977768 Alfred Kahl 1930 Urtiere oder Protozoa I Wimpertiere oder Ciliata Volume I General Section And Prostomata Medical Definition of CILIATA www merriam webster com Retrieved 2017 12 22 Adl Sina M Bass David Lane Christopher E Lukes Julius Schoch Conrad L Smirnov Alexey Agatha Sabine Berney Cedric Brown Matthew W Burki Fabien Cardenas Paco 2019 Revisions to the Classification Nomenclature and Diversity of Eukaryotes Journal of Eukaryotic Microbiology 66 1 4 119 doi 10 1111 jeu 12691 ISSN 1550 7408 PMC 6492006 PMID 30257078 Adl Sina M et al 2005 The new higher level classification of eukaryotes with emphasis on the taxonomy of protists Journal of Eukaryotic Microbiology 52 5 399 451 doi 10 1111 j 1550 7408 2005 00053 x PMID 16248873 Raikov I B 1969 The Macronucleus of Ciliates Research in Protozoology 3 4 115 ISBN 9781483186146 a b c d Archibald John M Simpson Alastair G B Slamovits Claudio H eds 2017 Handbook of the Protists 2 ed Springer International Publishing p 691 ISBN 978 3 319 28147 6 Prescott D M June 1994 The DNA of ciliated protozoa Microbiological Reviews 58 2 233 267 doi 10 1128 mr 58 2 233 267 1994 ISSN 0146 0749 PMC 372963 PMID 8078435 a b c H Lynn Denis 2008 The ciliated protozoa characterization classification and guide to the literature New York Springer p 324 ISBN 9781402082382 OCLC 272311632 DeLong John P Van Etten James L Al Ameeli Zeina Agarkova Irina V Dunigan David D 2023 01 03 The consumption of viruses returns energy to food chains Proceedings of the National Academy of Sciences 120 1 e2215000120 Bibcode 2023PNAS 12015000D doi 10 1073 pnas 2215000120 PMID 36574690 a b Lynn Denis 2008 The Ciliated Protozoa Characterization Classification and Guide to the Literature 3 ed Springer pp 58 ISBN 978 1 4020 8238 2 1007 978 1 4020 8239 9 a b c H Lynn Denis 2008 The ciliated protozoa characterization classification and guide to the literature New York Springer p 23 ISBN 9781402082382 OCLC 272311632 Berger JD October 1986 Autogamy in Paramecium Cell cycle stage specific commitment to meiosis Exp Cell Res 166 2 475 85 doi 10 1016 0014 4827 86 90492 1 PMID 3743667 a b c Raikov I B 1972 Nuclear phenomena during conjugation and autogamy in ciliates Research in Protozoology 4 149 Finley Harold E The conjugation of Vorticella microstoma Transactions of the American Microscopical Society 1943 97 121 Introduction to the Ciliata Retrieved 2009 01 16 a b c Mochizuki Kazufumi 2010 DNA rearrangements directed by non coding RNAs in ciliates Wiley Interdisciplinary Reviews RNA 1 3 376 387 doi 10 1002 wrna 34 PMC 3746294 PMID 21956937 Aufderheide Karl J 1986 Clonal aging in Paramecium tetraurelia II Evidence of functional changes in the macronucleus with age Mechanisms of Ageing and Development 37 3 265 279 doi 10 1016 0047 6374 86 90044 8 PMID 3553762 S2CID 28320562 Smith Sonneborn J 1979 DNA repair and longevity assurance in Paramecium tetraurelia Science 203 4385 1115 1117 Bibcode 1979Sci 203 1115S doi 10 1126 science 424739 PMID 424739 Holmes George E Holmes Norreen R July 1986 Accumulation of DNA damages in aging Paramecium tetraurelia Molecular and General Genetics 204 1 108 114 doi 10 1007 bf00330196 PMID 3091993 S2CID 11992591 Gilley David Blackburn Elizabeth H 1994 Lack of telomere shortening during senescence in Paramecium PDF Proceedings of the National Academy of Sciences of the United States of America 91 5 1955 1958 Bibcode 1994PNAS 91 1955G doi 10 1073 pnas 91 5 1955 PMC 43283 PMID 8127914 Li C W et al 2007 Ciliated protozoans from the Precambrian Doushantuo Formation Wengan South China Geological Society London Special Publications 286 1 151 156 Bibcode 2007GSLSP 286 151L doi 10 1144 SP286 11 S2CID 129584945 Bomfleur Benjamin Kerp Hans Taylor Thomas N Moestrup Ojvind Taylor Edith L 2012 12 18 Triassic leech cocoon from Antarctica contains fossil bell animal Proceedings of the National Academy of Sciences of the United States of America 109 51 20971 20974 Bibcode 2012PNAS 10920971B doi 10 1073 pnas 1218879109 ISSN 1091 6490 PMC 3529092 PMID 23213234 a b Fernandes Noemi M Vizzoni Vinicius F Borges Barbara do N Soares Carlos A G da Silva Neto Inacio D Paiva Thiago da S 2018 Molecular phylogeny and comparative morphology indicate that odontostomatids Alveolata Ciliophora form a distinct class level taxon related to Armophorea Molecular Phylogenetics and Evolution 126 382 389 doi 10 1016 j ympev 2018 04 026 ISSN 1055 7903 PMID 29679715 S2CID 5032558 Cavalier Smith T 2000 Flagellate megaevolution the basis for eukaryote diversification In Leadbeater B S C Green J C eds The Flagellates Unity diversity and evolution London Taylor and Francis pp 361 390 p 362 1 Balantidiasis DPDx Laboratory Identification of Parasitic Diseases of Public Health Concern Centers for Disease Control and Prevention 2013 Ramachandran Ambili 23 May 2003 Introduction The Parasite Balantidium coli The Disease Balantidiasis ParaSite Stanford University Schister Frederick L and Lynn Ramirez Avila October 2008 Current World Status of Balantidium coli Clinical Microbiology Reviews 21 4 626 638 doi 10 1128 CMR 00021 08 PMC 2570149 PMID 18854484 Further reading EditLynn Denis H 2008 The ciliated protozoa characterization classification and guide to the literature New York Springer ISBN 9781402082382 OCLC 272311632 Hausmann Klaus Bradbury Phyllis C eds 1996 Ciliates cells as organisms Stuttgart Gustav Fischer Verlag ISBN 978 3437250361 OCLC 34782787 Lee John J Leedale Gordon F Bradbury Phyllis C eds 2000 An illustrated guide to the protozoa organisms traditionally referred to as protozoa or newly discovered groups 2nd ed Lawrence KS Society of Protozoologists ISBN 9781891276224 OCLC 49191284 External links Edit Media related to Ciliophora at Wikimedia Commons Retrieved from https en wikipedia org w index php title Ciliate amp oldid 1136377623, wikipedia, wiki, book, books, library,

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