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Haplogroup O-M268

In human genetics, Haplogroup O-M268, also known as O1b (formerly Haplogroup O2), is a Y-chromosome DNA haplogroup. Haplogroup O-M268 is a primary subclade of haplogroup O-F265, itself a primary descendant branch of Haplogroup O-M175.

Haplogroup O-M268
Possible time of origin34,100 or 29,200 ybp[1]

33,103 [95% CI 24,460 <-> 40,854] ybp[2]

30,100 [95% CI 27,800 <-> 32,400] ybp[3]
Coalescence age28,500 [95% CI 26,200 <-> 30,900] ybp[3]
Possible place of originSoutheast Asia or East Asia[3]
AncestorO1 (O-F265)
DescendantsO1b1 (K18), O1b2 (P49/M176)
Defining mutationsP31, M268, L690/F167, F256/M1341, Y9038/FGC19644, L463/F330, M1461, F138, Y9317, FGC55566, F292/M1363, CTS4164, CTS6713/M1396, CTS5785/M1377, F435/M1417, F516, M1455
Highest frequenciesAustroasiatic-speaking peoples, Tai peoples, Hlai, Balinese, Javanese, Japanese, Ryukyuans, Koreans, Manchus, Malagasy

Origin

In a paper published in 2011 by a group of Chinese researchers affiliated with Fudan University, it has been suggested that China is the origin of the expansion of haplogroup O-P31 (therein called Haplogroup O2-M268).[4]

Distribution

Haplogroup O-P31 is notable for the peculiarities of its geographical distribution. Like all clades of Haplogroup O-M175, Haplogroup O-P31 is found only among the males of modern Eastern Eurasian populations. However, Haplogroup O-P31 is generally found with high frequency only among certain populations, such as the Austroasiatic peoples of India, Bangladesh and Southeast Asia, the Nicobarese of the Nicobar Islands in the Indian Ocean, Koreans, and Japanese.

Besides its widespread and patchy distribution, Haplogroup O1b-P31 is also notable for the fact that it can be divided into three major subclades that show almost completely disjunct distribution. One of these subclades, O1B1-K18 can be mainly divided into two subclades O1b1a1-PK4 (formerly O2a) and O1b1a2-PAGE59 (formerly O2*(xM95,M176)). O1b1a1-PK4 is found among some (mostly tribal) populations of South and Southeast Asia, as well as among the Japanese of Japan, the Javanese, Sundanese, and Balinese of Indonesia and Southern China. O1b1a2-PAGE59 is relatively rare and mainly distributed in East Asia, especially in Han Chinese. Another subclade, Haplogroup O1b2-M176 (formerly O2b), is found almost exclusively among the Japanese, Koreans, and some Manchurians.

Phylogenetics

Phylogenetic History

Prior to 2002, there were in academic literature at least seven naming systems for the Y-Chromosome Phylogenetic tree. This led to considerable confusion. In 2002, the major research groups came together and formed the Y-Chromosome Consortium (YCC). They published a joint paper that created a single new tree that all agreed to use. Later, a group of citizen scientists with an interest in population genetics and genetic genealogy formed a working group to create an amateur tree aiming at being above all timely. The table below brings together all of these works at the point of the landmark 2002 YCC Tree. This allows a researcher reviewing older published literature to quickly move between nomenclatures.

YCC 2002/2008 (Shorthand) (α) (β) (γ) (δ) (ε) (ζ) (η) YCC 2002 (Longhand) YCC 2005 (Longhand) YCC 2008 (Longhand) YCC 2010r (Longhand) ISOGG 2006 ISOGG 2007 ISOGG 2008 ISOGG 2009 ISOGG 2010 ISOGG 2011 ISOGG 2012
O-M175 26 VII 1U 28 Eu16 H9 I O* O O O O O O O O O O
O-M119 26 VII 1U 32 Eu16 H9 H O1* O1a O1a O1a O1a O1a O1a O1a O1a O1a O1a
O-M101 26 VII 1U 32 Eu16 H9 H O1a O1a1 O1a1a O1a1a O1a1 O1a1 O1a1a O1a1a O1a1a O1a1a O1a1a
O-M50 26 VII 1U 32 Eu16 H10 H O1b O1a2 O1a2 O1a2 O1a2 O1a2 O1a2 O1a2 O1a2 O1a2 O1a2
O-P31 26 VII 1U 33 Eu16 H5 I O2* O2 O2 O2 O2 O2 O2 O2 O2 O2 O2
O-M95 26 VII 1U 34 Eu16 H11 G O2a* O2a O2a O2a O2a O2a O2a O2a O2a O2a1 O2a1
O-M88 26 VII 1U 34 Eu16 H12 G O2a1 O2a1 O2a1 O2a1 O2a1 O2a1 O2a1 O2a1 O2a1 O2a1a O2a1a
O-SRY465 20 VII 1U 35 Eu16 H5 I O2b* O2b O2b O2b O2b O2b O2b O2b O2b O2b O2b
O-47z 5 VII 1U 26 Eu16 H5 I O2b1 O2b1a O2b1 O2b1 O2b1a O2b1a O2b1 O2b1 O2b1 O2b1 O2b1
O-M122 26 VII 1U 29 Eu16 H6 L O3* O3 O3 O3 O3 O3 O3 O3 O3 O3 O3
O-M121 26 VII 1U 29 Eu16 H6 L O3a O3a O3a1 O3a1 O3a1 O3a1 O3a1 O3a1 O3a1 O3a1a O3a1a
O-M164 26 VII 1U 29 Eu16 H6 L O3b O3b O3a2 O3a2 O3a2 O3a2 O3a2 O3a2 O3a2 O3a1b O3a1b
O-M159 13 VII 1U 31 Eu16 H6 L O3c O3c O3a3a O3a3a O3a3 O3a3 O3a3a O3a3a O3a3a O3a3a O3a3a
O-M7 26 VII 1U 29 Eu16 H7 L O3d* O3c O3a3b O3a3b O3a4 O3a4 O3a3b O3a3b O3a3b O3a2b O3a2b
O-M113 26 VII 1U 29 Eu16 H7 L O3d1 O3c1 O3a3b1 O3a3b1 - O3a4a O3a3b1 O3a3b1 O3a3b1 O3a2b1 O3a2b1
O-M134 26 VII 1U 30 Eu16 H8 L O3e* O3d O3a3c O3a3c O3a5 O3a5 O3a3c O3a3c O3a3c O3a2c1 O3a2c1
O-M117 26 VII 1U 30 Eu16 H8 L O3e1* O3d1 O3a3c1 O3a3c1 O3a5a O3a5a O3a3c1 O3a3c1 O3a3c1 O3a2c1a O3a2c1a
O-M162 26 VII 1U 30 Eu16 H8 L O3e1a O3d1a O3a3c1a O3a3c1a O3a5a1 O3a5a1 O3a3c1a O3a3c1a O3a3c1a O3a2c1a1 O3a2c1a1

Original Research Publications

The following research teams per their publications were represented in the creation of the YCC Tree.

Phylogenetic Trees

This phylogenetic tree of haplogroup O subclades is based on the YCC 2008 tree (Karafet 2008) and subsequent published research.

  • O-P31 (P31, M268)
    • O-K18
      • O-CTS10887/PAGE59 Mainly found in Han Chinese and occasionally found in Chinese (Dai), Manchu, Thailand (Phuan, Tai Yuan, Thai), Vietnam, the Philippines, West Kalimantan, Qatar, Hazara, Japan, Korea
      • O-PK4
        • O-F838 Found in Han Chinese[4][5] and in a specimen from medieval South Kazakhstan ascribed to the Turks;[6] probably also present in Thailand (Kaleun, Phuan, Thai),[7] Hanoi,[5] Ambon,[5] Ayeyarwady Region,[8] and Xinlong County[9]
        • O-M95 (M95)
          • O-CTS350
            • O-CTS350* Found in Japan
            • O-CTS10007 Found in Han Chinese in Hunan
          • O-M1310
            • O-F1252
              • O-SK1630/F5504 China (Shaanxi),[3] Russia (Ryazan Oblast)[3]
                • O-SK1636
              • O-F2924
                • O-CTS5854 Found in China (Han, Dai), Laos, Thailand, Japan, and the Philippines
                • O-M88 (M88, M111) Found in Vietnam, Laos, Thailand, Cambodia, Myanmar, China (Dai, Buyi, Zhuang, Li, Shui, She, Miao, Yao, De'ang, Bulang, Qiang, Tujia, Lisu, Achang, Nu, Lahu, Jinuo, Hani, Yi, Bai, Han), Taiwan (Han, Bunun, Yami), Java, Borneo, Malaysia, the Philippines
            • O-F789/M1283 Found in China, Vietnam, Cambodia, Singapore (Malay),[2] Indonesia, Laos, Thailand, Myanmar, Bhutan,[10] Bangladesh, and India
    • O-P49 (M176, SRY465, P49, 022454) Japan,[11] South Korea,[11] China,[11] Mongolia,[11] Vietnam,[11] Micronesia[11]
      • O-P49*(xPage92) Japan, South Korea
      • O-Page92
        • O-Page90 Japan (Hiroshima), Jilin[3]
        • O-CTS9259
          • O-CTS562 Beijing (Han),[3] South Korea,[12] Japan (Fukushima)[3]
          • O-K10/F1204
            • O-K10* Japan (Tokyo[3])
            • O-CTS10687 Japan,[11] Mongolia[11]
            • O-K7/CTS11723/47z Found in approximately 24% of Japanese males and with lower frequency in Korea and China
              • O-BY130355 Sichuan[3]
              • O-K2/CTS713
                • O-K2* Japan (Tokyo,[3] Aomori[3]), South Korea[3]
                • O-CTS203 Japan (Tokyo,[3] Miyagi[3]), Henan[3]
                • O-K14
                  • O-K14* Shanxi[3]
                  • O-M776 Japan (Tokyo[3])
                  • O-Z24594
                    • O-Z24594* South Korea[3]
                    • O-CTS56 Japan (Tokyo,[3] Kumamoto[3])
                • O-Y178266 Japan (Tokyo[3]), Beijing[3]
                • O-Z24599
                  • O-Z24599* Japan (Tokyo,[3] Yamaguchi[3])
                  • O-K473 Japan (Tokyo[3])
                  • O-Y181118 South Korea (Busan[3]), Hebei[3]
            • O-K4
              • O-K3/F940 Hunan (Han), Jiangxi, Henan (Han)
                • O-F940* Hunan,[3] Jiangxi[3]
                • O-K481 Hunan (Han)[3]
              • O-L682 Found in approximately 19% of South Korean males[13] and with lower frequency in Japan and China
                • O-L682* Shanxi[3]
                • O-K485
                  • O-K485* Japan (Tokyo)[3]
                  • O-CTS723
                    • O-CTS723* South Korea[3]
                    • O-A23652
                      • O-A23652* Japanese[3]
                      • O-A23653
                        • O-A23653* Japanese,[3] South Korea[3]
                        • O-A23658
                          • O-A23658* South Korea[3]
                          • O-Y165475 South Korea[3]
                    • O-Y24057
                      • O-Y24057* Shandong[3]
                      • O-A12448
                        • O-A12448* South Korea (incl. Daegu[3])
                        • O-PH40 Beijing (Han),[3] Shandong,[3] South Korea,[3] Japan[11]
                      • O-MF14220 South Korea[3]
                      • O-Y26376/CTS7620 Japan,[11] South Korea[11]
                        • O-MF14346 South Korea[3]
                        • O-Y26377

See also

Genetics

Y-DNA O Subclades

Y-DNA Backbone Tree

References

  1. ^ G. David Poznik, Yali Xue, Fernando L. Mendez, et al., "Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences." Nat Genet. 2016 June ; 48(6): 593–599. doi:10.1038/ng.3559.
  2. ^ a b Monika Karmin, Lauri Saag, Mário Vicente, et al., "A recent bottleneck of Y chromosome diversity coincides with a global change in culture." Genome Research 25:1–8; ISSN 1088-9051/15; www.genome.org
  3. ^ a b c d e f g h i j k l m n o p q r s t u v w x y z aa ab ac ad ae af ag ah ai aj ak al am an ao ap aq ar as at au av aw ax YFull Haplogroup YTree v5.04 at 16 May 2017
  4. ^ a b Shi Yan, Chuan-Chao Wang, Hui Li, Shi-Lin Li, Li Jin, and The Genographic Consortium, "An updated tree of Y-chromosome Haplogroup O and revised phylogenetic positions of mutations P164 and PK4." European Journal of Human Genetics (2011) 19, 1013–1015; doi:10.1038/ejhg.2011.64
  5. ^ a b c Jean A Trejaut, Estella S Poloni, Ju-Chen Yen, et al. (2014), "Taiwan Y-chromosomal DNA variation and its relationship with Island Southeast Asia." BMC Genetics 2014, 15:77. http://www.biomedcentral.com/1471-2156/15/77
  6. ^ Peter de Barros Damgaard, Nina Marchi, Simon Rasmussen, et al. (2018), "137 ancient human genomes from across the Eurasian steppes." Nature volume 557, pages 369–374 (2018). https://doi.org/10.1038/s41586-018-0094-2
  7. ^ Wibhu Kutanan, Jatupol Kampuansai, Metawee Srikummool, Andrea Brunelli, Silvia Ghirotto, Leonardo Arias, Enrico Macholdt, Alexander Hübner, Roland Schröder, and Mark Stoneking, "Contrasting Paternal and Maternal Genetic Histories of Thai and Lao Populations." Mol. Biol. Evol. Advance Access publication April 12, 2019. doi:10.1093/molbev/msz083
  8. ^ Min-Sheng Peng, Jun-Dong He, Long Fan, et al. (2013), "Retrieving Y chromosomal haplogroup trees using GWAS data." European Journal of Human Genetics (2013), 1–5. doi:10.1038/ejhg.2013.272
  9. ^ Wang C-C, Wang L-X, Shrestha R, Zhang M, Huang X-Y, et al. (2014), "Genetic Structure of Qiangic Populations Residing in the Western Sichuan Corridor." PLoS ONE 9(8): e103772. doi:10.1371/journal.pone.0103772
  10. ^ Pille Hallast, Chiara Batini, Daniel Zadik, et al. (2015), "The Y-Chromosome Tree Bursts into Leaf: 13,000 High-Confidence SNPs Covering the Majority of Known Clades." Molecular Biology and Evolution 2015 Mar;32(3):661-73. doi:10.1093/molbev/msu327
  11. ^ a b c d e f g h i j k Y-DNA Haplotree at Family Tree DNA
  12. ^ O Y-Haplogroup Project at Family Tree DNA
  13. ^ So Yeun Kwon, Hwan Young Lee, Eun Young Lee, Woo Ick Yang, and Kyoung-Jin Shin, "Confirmation of Y haplogroup tree topologies with newly suggested Y-SNPs for the C2, O2b and O3a subhaplogroups." Forensic Science International: Genetics 19 (2015) 42–46. https://dx.doi.org/10.1016/j.fsigen.2015.06.003

Footnotes

Works Cited

Journals

  • Su, Bing; Xiao, Junhua; Underhill, Peter; Deka, Ranjan; Zhang, Weiling; Akey, Joshua; Huang, Wei; Shen, Di; et al. (1999). "Y-Chromosome Evidence for a Northward Migration of Modern Humans into Eastern Asia during the Last Ice Age". The American Journal of Human Genetics. 65 (6): 1718–24. doi:10.1086/302680. PMC 1288383. PMID 10577926.

Websites

  • . Archived from the original on 2009-03-19.

Sources for conversion tables

  • Capelli, Cristian; Wilson, James F.; Richards, Martin; Stumpf, Michael P.H.; et al. (February 2001). "A Predominantly Indigenous Paternal Heritage for the Austronesian-Speaking Peoples of Insular Southeast Asia and Oceania". The American Journal of Human Genetics. 68 (2): 432–443. doi:10.1086/318205. PMC 1235276. PMID 11170891.
  • Hammer, Michael F.; Karafet, Tatiana M.; Redd, Alan J.; Jarjanazi, Hamdi; et al. (1 July 2001). "Hierarchical Patterns of Global Human Y-Chromosome Diversity". Molecular Biology and Evolution. 18 (7): 1189–1203. doi:10.1093/oxfordjournals.molbev.a003906. PMID 11420360.
  • Jobling, Mark A.; Tyler-Smith, Chris (2000), "New uses for new haplotypes", Trends in Genetics, 16 (8): 356–62, doi:10.1016/S0168-9525(00)02057-6, PMID 10904265
  • Kaladjieva, Luba; Calafell, Francesc; Jobling, Mark A; Angelicheva, Dora; et al. (February 2001). "Patterns of inter- and intra-group genetic diversity in the Vlax Roma as revealed by Y chromosome and mitochondrial DNA lineages". European Journal of Human Genetics. 9 (2): 97–104. doi:10.1038/sj.ejhg.5200597. PMID 11313742. S2CID 21432405.
  • Karafet, Tatiana; Xu, Liping; Du, Ruofu; Wang, William; et al. (September 2001). "Paternal Population History of East Asia: Sources, Patterns, and Microevolutionary Processes". The American Journal of Human Genetics. 69 (3): 615–628. doi:10.1086/323299. PMC 1235490. PMID 11481588.
  • Karafet, T. M.; Mendez, F. L.; Meilerman, M. B.; Underhill, P. A.; Zegura, S. L.; Hammer, M. F. (2008), "New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree", Genome Research, 18 (5): 830–8, doi:10.1101/gr.7172008, PMC 2336805, PMID 18385274
  • Semino, O.; Passarino, G; Oefner, PJ; Lin, AA; et al. (2000), "The Genetic Legacy of Paleolithic Homo sapiens sapiens in Extant Europeans: A Y Chromosome Perspective", Science, 290 (5494): 1155–9, Bibcode:2000Sci...290.1155S, doi:10.1126/science.290.5494.1155, PMID 11073453
  • Underhill, Peter A.; Shen, Peidong; Lin, Alice A.; Jin, Li; et al. (November 2000). "Y chromosome sequence variation and the history of human populations". Nature Genetics. 26 (3): 358–361. doi:10.1038/81685. PMID 11062480. S2CID 12893406.

Further reading

  • Firasat, Sadaf; Khaliq, Shagufta; Mohyuddin, Aisha; Papaioannou, Myrto; Tyler-Smith, Chris; Underhill, Peter A; Ayub, Qasim (2006). "Y-chromosomal evidence for a limited Greek contribution to the Pathan population of Pakistan". European Journal of Human Genetics. 15 (1): 121–6. doi:10.1038/sj.ejhg.5201726. PMC 2588664. PMID 17047675.
  • Fornarino, Simona; Pala, Maria; Battaglia, Vincenza; Maranta, Ramona; Achilli, Alessandro; Modiano, Guido; Torroni, Antonio; Semino, Ornella; Santachiara-Benerecetti, Silvana A (2009). "Mitochondrial and Y-chromosome diversity of the Tharus (Nepal): A reservoir of genetic variation". BMC Evolutionary Biology. 9: 154. doi:10.1186/1471-2148-9-154. PMC 2720951. PMID 19573232.
  • Hurles, M; Sykes, B; Jobling, M; Forster, P (2005). "The Dual Origin of the Malagasy in Island Southeast Asia and East Africa: Evidence from Maternal and Paternal Lineages". The American Journal of Human Genetics. 76 (5): 894–901. doi:10.1086/430051. PMC 1199379. PMID 15793703.
  • Karafet, Tatiana M.; Lansing, J. S.; Redd, Alan J.; Watkins, Joseph C.; Surata, S. P. K.; Arthawiguna, W. A.; Mayer, Laura; Bamshad, Michael; et al. (2005). "Balinese Y-Chromosome Perspective on the Peopling of Indonesia: Genetic Contributions from Pre-Neolithic Hunter-Gatherers, Austronesian Farmers, and Indian Traders". Human Biology. 77 (1): 93–114. doi:10.1353/hub.2005.0030. hdl:1808/13586. PMID 16114819. S2CID 7953854.
  • Sahoo, Sanghamitra; Kashyap, V.K. (2006). "Phylogeography of mitochondrial DNA and Y-Chromosome haplogroups reveal asymmetric gene flow in populations of Eastern India". American Journal of Physical Anthropology. 131 (1): 84–97. doi:10.1002/ajpa.20399. PMID 16485297.
  • Trivedi, Rajni; Sitalaximi, T.; Banerjee, Jheelam; Singh, Anamika; Sircar, P. K.; Kashyap, V. K. (2006). "Molecular insights into the origins of the Shompen, a declining population of the Nicobar archipelago". Journal of Human Genetics. 51 (3): 217–26. doi:10.1007/s10038-005-0349-2. PMID 16453062.

haplogroup, m268, this, article, multiple, issues, please, help, improve, discuss, these, issues, talk, page, learn, when, remove, these, template, messages, this, article, needs, additional, citations, verification, please, help, improve, this, article, addin. This article has multiple issues Please help improve it or discuss these issues on the talk page Learn how and when to remove these template messages This article needs additional citations for verification Please help improve this article by adding citations to reliable sources Unsourced material may be challenged and removed Find sources Haplogroup O M268 news newspapers books scholar JSTOR August 2009 Learn how and when to remove this template message This article may be too technical for most readers to understand Please help improve it to make it understandable to non experts without removing the technical details December 2012 Learn how and when to remove this template message The factual accuracy of parts of this article those related to article may be compromised due to out of date information Please help update this article to reflect recent events or newly available information December 2012 Learn how and when to remove this template message In human genetics Haplogroup O M268 also known as O1b formerly Haplogroup O2 is a Y chromosome DNA haplogroup Haplogroup O M268 is a primary subclade of haplogroup O F265 itself a primary descendant branch of Haplogroup O M175 Haplogroup O M268Possible time of origin34 100 or 29 200 ybp 1 33 103 95 CI 24 460 lt gt 40 854 ybp 2 30 100 95 CI 27 800 lt gt 32 400 ybp 3 Coalescence age28 500 95 CI 26 200 lt gt 30 900 ybp 3 Possible place of originSoutheast Asia or East Asia 3 AncestorO1 O F265 DescendantsO1b1 K18 O1b2 P49 M176 Defining mutationsP31 M268 L690 F167 F256 M1341 Y9038 FGC19644 L463 F330 M1461 F138 Y9317 FGC55566 F292 M1363 CTS4164 CTS6713 M1396 CTS5785 M1377 F435 M1417 F516 M1455Highest frequenciesAustroasiatic speaking peoples Tai peoples Hlai Balinese Javanese Japanese Ryukyuans Koreans Manchus Malagasy Contents 1 Origin 2 Distribution 3 Phylogenetics 3 1 Phylogenetic History 3 1 1 Original Research Publications 3 2 Phylogenetic Trees 4 See also 4 1 Genetics 4 2 Y DNA O Subclades 4 3 Y DNA Backbone Tree 5 References 5 1 Footnotes 5 2 Works Cited 5 3 Sources for conversion tables 5 4 Further readingOrigin EditIn a paper published in 2011 by a group of Chinese researchers affiliated with Fudan University it has been suggested that China is the origin of the expansion of haplogroup O P31 therein called Haplogroup O2 M268 4 Distribution EditHaplogroup O P31 is notable for the peculiarities of its geographical distribution Like all clades of Haplogroup O M175 Haplogroup O P31 is found only among the males of modern Eastern Eurasian populations However Haplogroup O P31 is generally found with high frequency only among certain populations such as the Austroasiatic peoples of India Bangladesh and Southeast Asia the Nicobarese of the Nicobar Islands in the Indian Ocean Koreans and Japanese Besides its widespread and patchy distribution Haplogroup O1b P31 is also notable for the fact that it can be divided into three major subclades that show almost completely disjunct distribution One of these subclades O1B1 K18 can be mainly divided into two subclades O1b1a1 PK4 formerly O2a and O1b1a2 PAGE59 formerly O2 xM95 M176 O1b1a1 PK4 is found among some mostly tribal populations of South and Southeast Asia as well as among the Japanese of Japan the Javanese Sundanese and Balinese of Indonesia and Southern China O1b1a2 PAGE59 is relatively rare and mainly distributed in East Asia especially in Han Chinese Another subclade Haplogroup O1b2 M176 formerly O2b is found almost exclusively among the Japanese Koreans and some Manchurians Phylogenetics EditPhylogenetic History Edit Main article Conversion table for Y chromosome haplogroups Prior to 2002 there were in academic literature at least seven naming systems for the Y Chromosome Phylogenetic tree This led to considerable confusion In 2002 the major research groups came together and formed the Y Chromosome Consortium YCC They published a joint paper that created a single new tree that all agreed to use Later a group of citizen scientists with an interest in population genetics and genetic genealogy formed a working group to create an amateur tree aiming at being above all timely The table below brings together all of these works at the point of the landmark 2002 YCC Tree This allows a researcher reviewing older published literature to quickly move between nomenclatures YCC 2002 2008 Shorthand a b g d e z h YCC 2002 Longhand YCC 2005 Longhand YCC 2008 Longhand YCC 2010r Longhand ISOGG 2006 ISOGG 2007 ISOGG 2008 ISOGG 2009 ISOGG 2010 ISOGG 2011 ISOGG 2012O M175 26 VII 1U 28 Eu16 H9 I O O O O O O O O O O OO M119 26 VII 1U 32 Eu16 H9 H O1 O1a O1a O1a O1a O1a O1a O1a O1a O1a O1aO M101 26 VII 1U 32 Eu16 H9 H O1a O1a1 O1a1a O1a1a O1a1 O1a1 O1a1a O1a1a O1a1a O1a1a O1a1aO M50 26 VII 1U 32 Eu16 H10 H O1b O1a2 O1a2 O1a2 O1a2 O1a2 O1a2 O1a2 O1a2 O1a2 O1a2O P31 26 VII 1U 33 Eu16 H5 I O2 O2 O2 O2 O2 O2 O2 O2 O2 O2 O2O M95 26 VII 1U 34 Eu16 H11 G O2a O2a O2a O2a O2a O2a O2a O2a O2a O2a1 O2a1O M88 26 VII 1U 34 Eu16 H12 G O2a1 O2a1 O2a1 O2a1 O2a1 O2a1 O2a1 O2a1 O2a1 O2a1a O2a1aO SRY465 20 VII 1U 35 Eu16 H5 I O2b O2b O2b O2b O2b O2b O2b O2b O2b O2b O2bO 47z 5 VII 1U 26 Eu16 H5 I O2b1 O2b1a O2b1 O2b1 O2b1a O2b1a O2b1 O2b1 O2b1 O2b1 O2b1O M122 26 VII 1U 29 Eu16 H6 L O3 O3 O3 O3 O3 O3 O3 O3 O3 O3 O3O M121 26 VII 1U 29 Eu16 H6 L O3a O3a O3a1 O3a1 O3a1 O3a1 O3a1 O3a1 O3a1 O3a1a O3a1aO M164 26 VII 1U 29 Eu16 H6 L O3b O3b O3a2 O3a2 O3a2 O3a2 O3a2 O3a2 O3a2 O3a1b O3a1bO M159 13 VII 1U 31 Eu16 H6 L O3c O3c O3a3a O3a3a O3a3 O3a3 O3a3a O3a3a O3a3a O3a3a O3a3aO M7 26 VII 1U 29 Eu16 H7 L O3d O3c O3a3b O3a3b O3a4 O3a4 O3a3b O3a3b O3a3b O3a2b O3a2bO M113 26 VII 1U 29 Eu16 H7 L O3d1 O3c1 O3a3b1 O3a3b1 O3a4a O3a3b1 O3a3b1 O3a3b1 O3a2b1 O3a2b1O M134 26 VII 1U 30 Eu16 H8 L O3e O3d O3a3c O3a3c O3a5 O3a5 O3a3c O3a3c O3a3c O3a2c1 O3a2c1O M117 26 VII 1U 30 Eu16 H8 L O3e1 O3d1 O3a3c1 O3a3c1 O3a5a O3a5a O3a3c1 O3a3c1 O3a3c1 O3a2c1a O3a2c1aO M162 26 VII 1U 30 Eu16 H8 L O3e1a O3d1a O3a3c1a O3a3c1a O3a5a1 O3a5a1 O3a3c1a O3a3c1a O3a3c1a O3a2c1a1 O3a2c1a1Original Research Publications Edit The following research teams per their publications were represented in the creation of the YCC Tree a Jobling and Tyler Smith 2000 and Kaladjieva 2001 b Underhill 2000 g Hammer 2001 d Karafet 2001 e Semino 2000 z Su 1999 h Capelli 2001 Phylogenetic Trees Edit This phylogenetic tree of haplogroup O subclades is based on the YCC 2008 tree Karafet 2008 and subsequent published research O P31 P31 M268 O K18 O CTS10887 PAGE59 Mainly found in Han Chinese and occasionally found in Chinese Dai Manchu Thailand Phuan Tai Yuan Thai Vietnam the Philippines West Kalimantan Qatar Hazara Japan Korea O PK4 O F838 Found in Han Chinese 4 5 and in a specimen from medieval South Kazakhstan ascribed to the Turks 6 probably also present in Thailand Kaleun Phuan Thai 7 Hanoi 5 Ambon 5 Ayeyarwady Region 8 and Xinlong County 9 O M95 M95 O CTS350 O CTS350 Found in Japan O CTS10007 Found in Han Chinese in Hunan O M1310 O F1252 O SK1630 F5504 China Shaanxi 3 Russia Ryazan Oblast 3 O SK1636 O F2924 O CTS5854 Found in China Han Dai Laos Thailand Japan and the Philippines O M88 M88 M111 Found in Vietnam Laos Thailand Cambodia Myanmar China Dai Buyi Zhuang Li Shui She Miao Yao De ang Bulang Qiang Tujia Lisu Achang Nu Lahu Jinuo Hani Yi Bai Han Taiwan Han Bunun Yami Java Borneo Malaysia the Philippines O F789 M1283 Found in China Vietnam Cambodia Singapore Malay 2 Indonesia Laos Thailand Myanmar Bhutan 10 Bangladesh and India O P49 M176 SRY465 P49 022454 Japan 11 South Korea 11 China 11 Mongolia 11 Vietnam 11 Micronesia 11 O P49 xPage92 Japan South Korea O Page92 O Page90 Japan Hiroshima Jilin 3 O CTS9259 O CTS562 Beijing Han 3 South Korea 12 Japan Fukushima 3 O K10 F1204 O K10 Japan Tokyo 3 O CTS10687 Japan 11 Mongolia 11 O K7 CTS11723 47z Found in approximately 24 of Japanese males and with lower frequency in Korea and China O BY130355 Sichuan 3 O K2 CTS713 O K2 Japan Tokyo 3 Aomori 3 South Korea 3 O CTS203 Japan Tokyo 3 Miyagi 3 Henan 3 O K14 O K14 Shanxi 3 O M776 Japan Tokyo 3 O Z24594 O Z24594 South Korea 3 O CTS56 Japan Tokyo 3 Kumamoto 3 O Y178266 Japan Tokyo 3 Beijing 3 O Z24599 O Z24599 Japan Tokyo 3 Yamaguchi 3 O K473 Japan Tokyo 3 O Y181118 South Korea Busan 3 Hebei 3 O K4 O K3 F940 Hunan Han Jiangxi Henan Han O F940 Hunan 3 Jiangxi 3 O K481 Hunan Han 3 O L682 Found in approximately 19 of South Korean males 13 and with lower frequency in Japan and China O L682 Shanxi 3 O K485 O K485 Japan Tokyo 3 O CTS723 O CTS723 South Korea 3 O A23652 O A23652 Japanese 3 O A23653 O A23653 Japanese 3 South Korea 3 O A23658 O A23658 South Korea 3 O Y165475 South Korea 3 O Y24057 O Y24057 Shandong 3 O A12448 O A12448 South Korea incl Daegu 3 O PH40 Beijing Han 3 Shandong 3 South Korea 3 Japan 11 O MF14220 South Korea 3 O Y26376 CTS7620 Japan 11 South Korea 11 O MF14346 South Korea 3 O Y26377 O Y26377 Japan Okayama 3 Hezhen 3 O CTS1175 Japan Kochi 3 Tokyo 3 See also EditGenetics Edit Genetic genealogy Haplogroup Haplotype Human Y chromosome DNA haplogroup Molecular phylogenetics Paragroup Subclade Y chromosome haplogroups in populations of the world Y DNA haplogroups by ethnic group Y DNA haplogroups in populations of East and Southeast Asia Y DNA O Subclades Edit O 47z O M101 O M113 O M117 O M119 O M121 O M122 O M134 O M159 O M162 O M164 O M175 O M176 O M50 O M7 O M88 O M95 O MSY2 2 O P31 Y DNA Backbone Tree EditReferences Edit G David Poznik Yali Xue Fernando L Mendez et al Punctuated bursts in human male demography inferred from 1 244 worldwide Y chromosome sequences Nat Genet 2016 June 48 6 593 599 doi 10 1038 ng 3559 a b Monika Karmin Lauri Saag Mario Vicente et al A recent bottleneck of Y chromosome diversity coincides with a global change in culture Genome Research 25 1 8 ISSN 1088 9051 15 www genome org a b c d e f g h i j k l m n o p q r s t u v w x y z aa ab ac ad ae af ag ah ai aj ak al am an ao ap aq ar as at au av aw ax YFull Haplogroup YTree v5 04 at 16 May 2017 a b Shi Yan Chuan Chao Wang Hui Li Shi Lin Li Li Jin and The Genographic Consortium An updated tree of Y chromosome Haplogroup O and revised phylogenetic positions of mutations P164 and PK4 European Journal of Human Genetics 2011 19 1013 1015 doi 10 1038 ejhg 2011 64 a b c Jean A Trejaut Estella S Poloni Ju Chen Yen et al 2014 Taiwan Y chromosomal DNA variation and its relationship with Island Southeast Asia BMC Genetics 2014 15 77 http www biomedcentral com 1471 2156 15 77 Peter de Barros Damgaard Nina Marchi Simon Rasmussen et al 2018 137 ancient human genomes from across the Eurasian steppes Nature volume 557 pages 369 374 2018 https doi org 10 1038 s41586 018 0094 2 Wibhu Kutanan Jatupol Kampuansai Metawee Srikummool Andrea Brunelli Silvia Ghirotto Leonardo Arias Enrico Macholdt Alexander Hubner Roland Schroder and Mark Stoneking Contrasting Paternal and Maternal Genetic Histories of Thai and Lao Populations Mol Biol Evol Advance Access publication April 12 2019 doi 10 1093 molbev msz083 Min Sheng Peng Jun Dong He Long Fan et al 2013 Retrieving Y chromosomal haplogroup trees using GWAS data European Journal of Human Genetics 2013 1 5 doi 10 1038 ejhg 2013 272 Wang C C Wang L X Shrestha R Zhang M Huang X Y et al 2014 Genetic Structure of Qiangic Populations Residing in the Western Sichuan Corridor PLoS ONE 9 8 e103772 doi 10 1371 journal pone 0103772 Pille Hallast Chiara Batini Daniel Zadik et al 2015 The Y Chromosome Tree Bursts into Leaf 13 000 High Confidence SNPs Covering the Majority of Known Clades Molecular Biology and Evolution 2015 Mar 32 3 661 73 doi 10 1093 molbev msu327 a b c d e f g h i j k Y DNA Haplotree at Family Tree DNA O Y Haplogroup Project at Family Tree DNA So Yeun Kwon Hwan Young Lee Eun Young Lee Woo Ick Yang and Kyoung Jin Shin Confirmation of Y haplogroup tree topologies with newly suggested Y SNPs for the C2 O2b and O3a subhaplogroups Forensic Science International Genetics 19 2015 42 46 https dx doi org 10 1016 j fsigen 2015 06 003 Footnotes Edit This section is empty You can help by adding to it February 2013 Works Cited Edit Journals Su Bing Xiao Junhua Underhill Peter Deka Ranjan Zhang Weiling Akey Joshua Huang Wei Shen Di et al 1999 Y Chromosome Evidence for a Northward Migration of Modern Humans into Eastern Asia during the Last Ice Age The American Journal of Human Genetics 65 6 1718 24 doi 10 1086 302680 PMC 1288383 PMID 10577926 Websites Y DNA Haplogroup Descriptions Archived from the original on 2009 03 19 Sources for conversion tables Edit Capelli Cristian Wilson James F Richards Martin Stumpf Michael P H et al February 2001 A Predominantly Indigenous Paternal Heritage for the Austronesian Speaking Peoples of Insular Southeast Asia and Oceania The American Journal of Human Genetics 68 2 432 443 doi 10 1086 318205 PMC 1235276 PMID 11170891 Hammer Michael F Karafet Tatiana M Redd Alan J Jarjanazi Hamdi et al 1 July 2001 Hierarchical Patterns of Global Human Y Chromosome Diversity Molecular Biology and Evolution 18 7 1189 1203 doi 10 1093 oxfordjournals molbev a003906 PMID 11420360 Jobling Mark A Tyler Smith Chris 2000 New uses for new haplotypes Trends in Genetics 16 8 356 62 doi 10 1016 S0168 9525 00 02057 6 PMID 10904265 Kaladjieva Luba Calafell Francesc Jobling Mark A Angelicheva Dora et al February 2001 Patterns of inter and intra group genetic diversity in the Vlax Roma as revealed by Y chromosome and mitochondrial DNA lineages European Journal of Human Genetics 9 2 97 104 doi 10 1038 sj ejhg 5200597 PMID 11313742 S2CID 21432405 Karafet Tatiana Xu Liping Du Ruofu Wang William et al September 2001 Paternal Population History of East Asia Sources Patterns and Microevolutionary Processes The American Journal of Human Genetics 69 3 615 628 doi 10 1086 323299 PMC 1235490 PMID 11481588 Karafet T M Mendez F L Meilerman M B Underhill P A Zegura S L Hammer M F 2008 New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree Genome Research 18 5 830 8 doi 10 1101 gr 7172008 PMC 2336805 PMID 18385274 Semino O Passarino G Oefner PJ Lin AA et al 2000 The Genetic Legacy of Paleolithic Homo sapiens sapiens in Extant Europeans A Y Chromosome Perspective Science 290 5494 1155 9 Bibcode 2000Sci 290 1155S doi 10 1126 science 290 5494 1155 PMID 11073453 Underhill Peter A Shen Peidong Lin Alice A Jin Li et al November 2000 Y chromosome sequence variation and the history of human populations Nature Genetics 26 3 358 361 doi 10 1038 81685 PMID 11062480 S2CID 12893406 Further reading Edit Firasat Sadaf Khaliq Shagufta Mohyuddin Aisha Papaioannou Myrto Tyler Smith Chris Underhill Peter A Ayub Qasim 2006 Y chromosomal evidence for a limited Greek contribution to the Pathan population of Pakistan European Journal of Human Genetics 15 1 121 6 doi 10 1038 sj ejhg 5201726 PMC 2588664 PMID 17047675 Fornarino Simona Pala Maria Battaglia Vincenza Maranta Ramona Achilli Alessandro Modiano Guido Torroni Antonio Semino Ornella Santachiara Benerecetti Silvana A 2009 Mitochondrial and Y chromosome diversity of the Tharus Nepal A reservoir of genetic variation BMC Evolutionary Biology 9 154 doi 10 1186 1471 2148 9 154 PMC 2720951 PMID 19573232 Hurles M Sykes B Jobling M Forster P 2005 The Dual Origin of the Malagasy in Island Southeast Asia and East Africa Evidence from Maternal and Paternal Lineages The American Journal of Human Genetics 76 5 894 901 doi 10 1086 430051 PMC 1199379 PMID 15793703 Karafet Tatiana M Lansing J S Redd Alan J Watkins Joseph C Surata S P K Arthawiguna W A Mayer Laura Bamshad Michael et al 2005 Balinese Y Chromosome Perspective on the Peopling of Indonesia Genetic Contributions from Pre Neolithic Hunter Gatherers Austronesian Farmers and Indian Traders Human Biology 77 1 93 114 doi 10 1353 hub 2005 0030 hdl 1808 13586 PMID 16114819 S2CID 7953854 Sahoo Sanghamitra Kashyap V K 2006 Phylogeography of mitochondrial DNA and Y Chromosome haplogroups reveal asymmetric gene flow in populations of Eastern India American Journal of Physical Anthropology 131 1 84 97 doi 10 1002 ajpa 20399 PMID 16485297 Trivedi Rajni Sitalaximi T Banerjee Jheelam Singh Anamika Sircar P K Kashyap V K 2006 Molecular insights into the origins of the Shompen a declining population of the Nicobar archipelago Journal of Human Genetics 51 3 217 26 doi 10 1007 s10038 005 0349 2 PMID 16453062 Retrieved from https en wikipedia org w index php title Haplogroup O M268 amp oldid 1126437567, wikipedia, wiki, book, books, library,

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