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Bioturbation

Bioturbation is defined as the reworking of soils and sediments by animals or plants. It includes burrowing, ingestion, and defecation of sediment grains. Bioturbating activities have a profound effect on the environment and[2] are thought to be a primary driver of biodiversity.[3] The formal study of bioturbation began in the 1800s by Charles Darwin experimenting in his garden.[3] The disruption of aquatic sediments and terrestrial soils through bioturbating activities provides significant ecosystem services. These include the alteration of nutrients in aquatic sediment and overlying water, shelter to other species in the form of burrows in terrestrial and water ecosystems, and soil production on land.[4][5]

Sediment on the left tusk of a walrus. Walrus bioturbations in Arctic benthic sediments have large-scale ecosystem effects.[1]

Bioturbators are deemed ecosystem engineers because they alter resource availability to other species through the physical changes they make to their environments.[5] This type of ecosystem change affects the evolution of cohabitating species and the environment,[5] which is evident in trace fossils left in marine and terrestrial sediments. Other bioturbation effects include altering the texture of sediments (diagenesis), bioirrigation, and displacement of microorganisms and non-living particles. Bioturbation is sometimes confused with the process of bioirrigation, however these processes differ in what they are mixing; bioirrigation refers to the mixing of water and solutes in sediments and is an effect of bioturbation.[3]

Walruses, salmon, and pocket gophers are examples of large bioturbators.[6][7][1] Although the activities of these large macrofaunal bioturbators are more conspicuous, the dominant bioturbators are small invertebrates, such as earthworms, polychaetes, ghost shrimp, mud shrimp, and midge larvae.[3][8] The activities of these small invertebrates, which include burrowing and ingestion and defecation of sediment grains, contribute to mixing and the alteration of sediment structure.

Functional groups edit

Bioturbators have been organized by a variety of functional groupings based on either ecological characteristics or biogeochemical effects.[9][10] While the prevailing categorization is based on the way bioturbators transport and interact with sediments, the various groupings likely stem from the relevance of a categorization mode to a field of study (such as ecology or sediment biogeochemistry) and an attempt to concisely organize the wide variety of bioturbating organisms in classes that describe their function. Examples of categorizations include those based on feeding and motility,[11] feeding and biological interactions,[12] and mobility modes.[13] The most common set of groupings are based on sediment transport and are as follows:

  • Gallery-diffusers create complex tube networks within the upper sediment layers and transport sediment through feeding, burrow construction, and general movement throughout their galleries.[14] Gallery-diffusers are heavily associated with burrowing polychaetes, such as Nereis diversicolor and Marenzelleria spp.[5][14]
  • Biodiffusers transport sediment particles randomly over short distances as they move through sediments. Animals mostly attributed to this category include bivalves such as clams, and amphipod species, but can also include larger vertebrates, such as bottom-dwelling fish and rays that feed along the sea floor.[5][14] Biodiffusers can be further divided into two subgroups, which include epifaunal (organisms that live on the surface sediments) biodiffusers and surface biodiffusers.[5] This subgrouping may also include gallery-diffusers,[5] reducing the number of functional groups.
  • Upward-conveyors are oriented head-down in sediments, where they feed at depth and transport sediment through their guts to the sediment surface.[14] Major upward-conveyor groups include burrowing polychaetes like the lugworm, Arenicola marina, and thalassinid shrimps.[15][16]
  • Downward-conveyor species are oriented with their heads towards the sediment-water interface and defecation occurs at depth.[14] Their activities transport sediment from the surface to deeper sediment layers as they feed.[14] Notable downward-conveyors include those in the peanut worm family, Sipunculidae.[14]
  • Regenerators are categorized by their ability to release sediment to the overlying water column, which is then dispersed as they burrow.[14] After regenerators abandon their burrows, water flow at the sediment surface can push in and collapse the burrow.[5][14] Examples of regenerator species include fiddler and ghost crabs.[5]

Ecological roles edit

 
The lugworm Arenicola marina
 
Gobies keeping watch outside a shrimp burrow

The evaluation of the ecological role of bioturbators has largely been species-specific.[8] However, their ability to transport solutes, such as dissolved oxygen, enhance organic matter decomposition and diagenesis, and alter sediment structure has made them important for the survival and colonization by other macrofaunal and microbial communities.[8]

Microbial communities are greatly influenced by bioturbator activities, as increased transport of more energetically favorable oxidants, such as oxygen, to typically highly reduced sediments at depth alters the microbial metabolic processes occurring around burrows.[17][15] As bioturbators burrow, they also increase the surface area of sediments across which oxidized and reduced solutes can be exchanged, thereby increasing the overall sediment metabolism.[18] This increase in sediment metabolism and microbial activity further results in enhanced organic matter decomposition and sediment oxygen uptake.[15] In addition to the effects of burrowing activity on microbial communities, studies suggest that bioturbator fecal matter provides a highly nutritious food source for microbes and other macrofauna, thus enhancing benthic microbial activity.[15] This increased microbial activity by bioturbators can contribute to increased nutrient release to the overlying water column.[19] Nutrients released from enhanced microbial decomposition of organic matter, notably limiting nutrients, such as ammonium, can have bottom-up effects on ecosystems and result in increased growth of phytoplankton and bacterioplankton.[19][20][21]

Burrows offer protection from predation and harsh environmental conditions.[7] For example, termites (Macrotermes bellicosus) burrow and create mounds that have a complex system of air ducts and evaporation devices that create a suitable microclimate in an unfavorable physical environment.[22] Many species are attracted to bioturbator burrows because of their protective capabilities.[7] The shared use of burrows has enabled the evolution of symbiotic relationships between bioturbators and the many species that utilize their burrows.[23][24] For example, gobies, scale-worms, and crabs live in the burrows made by innkeeper worms.[25] Social interactions provide evidence of co-evolution between hosts and their burrow symbionts.[26][22] This is exemplified by shrimp-goby associations.[26] Shrimp burrows provide shelter for gobies and gobies serve as a scout at the mouth of the burrow, signaling the presence of potential danger.[26] In contrast, the blind goby Typhlogobius californiensis lives within the deep portion of Callianassa shrimp burrows where there is not much light.[7] The blind goby is an example of a species that is an obligate commensalist, meaning their existence depends on the host bioturbator and its burrow.[7] Although newly hatched blind gobies have fully developed eyes, their eyes become withdrawn and covered by skin as they develop.[7] They show evidence of commensal morphological evolution because it is hypothesized that the lack of light in the burrows where the blind gobies reside is responsible for the evolutionary loss of functional eyes.[7]

Bioturbators can also inhibit the presence of other benthic organisms by smothering, exposing other organisms to predators, or resource competition.[27][28] While thalassinidean shrimps can provide shelter for some organisms and cultivate interspecies relationships within burrows, they have also been shown to have strong negative effects on other species, especially those of bivalves and surface-grazing gastropods, because thalassinidean shrimps can smother bivalves when they resuspend sediment. They have also been shown to exclude or inhibit polychaetes, cumaceans, and amphipods.[29][30][28] This has become a serious issue in the northwestern United States, as ghost and mud shrimp (thalassinidean shrimp) are considered pests to bivalve aquaculture operations.[31] The presence of bioturbators can have both negative and positive effects on the recruitment of larvae of conspecifics (those of the same species) and those of other species, as the resuspension of sediments and alteration of flow at the sediment-water interface can affect the ability of larvae to burrow and remain in sediments.[32] This effect is largely species-specific, as species differences in resuspension and burrowing modes have variable effects on fluid dynamics at the sediment-water interface.[32] Deposit-feeding bioturbators may also hamper recruitment by consuming recently settled larvae.[33]

Biogeochemical effects edit

Since its onset around 539 million years ago, bioturbation has been responsible for changes in ocean chemistry, primarily through nutrient cycling.[34] Bioturbators played, and continue to play, an important role in nutrient transport across sediments.[34]

For example, bioturbating animals are hypothesized to have affected the cycling of sulfur in the early oceans. According to this hypothesis, bioturbating activities had a large effect on the sulfate concentration in the ocean. Around the Cambrian-Precambrian boundary (539 million years ago), animals begin to mix reduced sulfur from ocean sediments to overlying water causing sulfide to oxidize, which increased the sulfate composition in the ocean. During large extinction events, the sulfate concentration in the ocean was reduced. Although this is difficult to measure directly, seawater sulfur isotope compositions during these times indicates bioturbators influenced the sulfur cycling in the early Earth.

Bioturbators have also altered phosphorus cycling on geologic scales.[35] Bioturbators mix readily available particulate organic phosphorus (P) deeper into ocean sediment layers which prevents the precipitation of phosphorus (mineralization) by increasing the sequestration of phosphorus above normal chemical rates. The sequestration of phosphorus limits oxygen concentrations by decreasing production on a geologic time scale.[36] This decrease in production results in an overall decrease in oxygen levels, and it has been proposed that the rise of bioturbation corresponds to a decrease in oxygen levels of that time.[36] The negative feedback of animals sequestering phosphorus in the sediments and subsequently reducing oxygen concentrations in the environment limits the intensity of bioturbation in this early environment.[36]

Organic contaminants edit

Bioturbation can either enhance or reduce the flux of contaminants from the sediment to the water column, depending on the mechanism of sediment transport.[37] In polluted sediments, bioturbating animals can mix the surface layer and cause the release of sequestered contaminants into the water column.[38][39] Upward-conveyor species, like polychaete worms, are efficient at moving contaminated particles to the surface.[40][39] Invasive animals can remobilize contaminants previously considered to be buried at a safe depth. In the Baltic Sea, the invasive Marenzelleria species of polychaete worms can burrow to 35-50 centimeters which is deeper than native animals, thereby releasing previously sequestered contaminants.[38][37] However, bioturbating animals that live in the sediment (infauna) can also reduce the flux of contaminants to the water column by burying hydrophobic organic contaminants into the sediment.[37] Burial of uncontaminated particles by bioturbating organisms provides more absorptive surfaces to sequester chemical pollutants in the sediments.[39]

Ecosystem impacts edit

Nutrient cycling is still affected by bioturbation in the modern Earth. Some examples in the terrestrial and aquatic ecosystems are below.

Terrestrial edit

 
Pocket gopher mounds

Plants and animals utilize soil for food and shelter, disturbing the upper soil layers and transporting chemically weathered rock called saprolite from the lower soil depths to the surface.[3] Terrestrial bioturbation is important in soil production, burial, organic matter content, and downslope transport. Tree roots are sources of soil organic matter, with root growth and stump decay also contributing to soil transport and mixing.[3] Death and decay of tree roots first delivers organic matter to the soil and then creates voids, decreasing soil density. Tree uprooting causes considerable soil displacement by producing mounds, mixing the soil, or inverting vertical sections of soil.[3]

Burrowing animals, such as earth worms and small mammals, form passageways for air and water transport which changes the soil properties, such as the vertical particle-size distribution, soil porosity, and nutrient content.[3] Invertebrates that burrow and consume plant detritus help produce an organic-rich topsoil known as the soil biomantle, and thus contribute to the formation of soil horizons.[4] Small mammals such as pocket gophers also play an important role in the production of soil, possibly with an equal magnitude to abiotic processes.[41] Pocket gophers form above-ground mounds, which moves soil from the lower soil horizons to the surface, exposing minimally weathered rock to surface erosion processes, speeding soil formation.[3] Pocket gophers are thought to play an important role in the downslope transport of soil, as the soil that forms their mounds is more susceptible to erosion and subsequent transport. Similar to tree root effects, the construction of burrows-even when backfilled- decreases soil density.[41] The formation of surface mounds also buries surface vegetation, creating nutrient hotspots when the vegetation decomposes, increasing soil organic matter. Due to the high metabolic demands of their burrow-excavating subterranean lifestyle, pocket gophers must consume large amounts of plant material.[41] Though this has a detrimental effect on individual plants, the net effect of pocket gophers is increased plant growth from their positive effects on soil nutrient content and physical soil properties.[41]

Freshwater edit

Important sources of bioturbation in freshwater ecosystems include benthivorous (bottom-dwelling) fish, macroinvertebrates such as worms, insect larvae, crustaceans and molluscs, and seasonal influences from anadromous (migrating) fish such as salmon. Anadromous fish migrate from the sea into fresh-water rivers and streams to spawn. Macroinvertebrates act as biological pumps for moving material between the sediments and water column, feeding on sediment organic matter and transporting mineralized nutrients into the water column.[42] Both benthivorous and anadromous fish can affect ecosystems by decreasing primary production through sediment re-suspension,[42] the subsequent displacement of benthic primary producers, and recycling nutrients from the sediment back into the water column.[43][44]

Lakes and ponds edit

 
Chironomid larvae.

The sediments of lake and pond ecosystems are rich in organic matter, with higher organic matter and nutrient contents in the sediments than in the overlying water.[42] Nutrient re-regeneration through sediment bioturbation moves nutrients into the water column, thereby enhancing the growth of aquatic plants and phytoplankton (primary producers).[42] The major nutrients of interest in this flux are nitrogen and phosphorus, which often limit the levels of primary production in an ecosystem.[42] Bioturbation increases the flux of mineralized (inorganic) forms of these elements, which can be directly used by primary producers. In addition, bioturbation increases the water column concentrations of nitrogen and phosphorus-containing organic matter, which can then be consumed by fauna and mineralized.[42]

Lake and pond sediments often transition from the aerobic (oxygen containing) character of the overlaying water to the anaerobic (without oxygen) conditions of the lower sediment over sediment depths of only a few millimeters, therefore, even bioturbators of modest size can affect this transition of the chemical characteristics of sediments.[42] By mixing anaerobic sediments into the water column, bioturbators allow aerobic processes to interact with the re-suspended sediments and the newly exposed bottom sediment surfaces.[42]

Macroinvertebrates including chironomid (non-biting midges) larvae and tubificid worms (detritus worms) are important agents of bioturbation in these ecosystems and have different effects based on their respective feeding habits. Tubificid worms do not form burrows, they are upward conveyors. Chironomids, on the other hand, form burrows in the sediment, acting as bioirrigators and aerating the sediments and are downward conveyors. This activity, combined with chironomid's respiration within their burrows, decrease available oxygen in the sediment and increase the loss of nitrates through enhanced rates of denitrification.[42]

The increased oxygen input to sediments by macroinvertebrate bioirrigation coupled with bioturbation at the sediment-water interface complicates the total flux of phosphorus . While bioturbation results in a net flux of phosphorus into the water column, the bio-irrigation of the sediments with oxygenated water enhances the adsorption of phosphorus onto iron-oxide compounds, thereby reducing the total flux of phosphorus into the water column.[42]

The presence of macroinvertebrates in sediment can initiate bioturbation due to their status as an important food source for benthivorous fish such as carp.[42] Of the bioturbating, benthivorous fish species, carp in particular are important ecosystem engineers and their foraging and burrowing activities can alter the water quality characteristics of ponds and lakes.[43] Carp increase water turbidity by the re-suspension of benthic sediments. This increased turbidity limits light penetration and coupled with increased nutrient flux from the sediment into the water column, inhibits the growth of macrophytes (aquatic plants) favoring the growth of phytoplankton in the surface waters. Surface phytoplankton colonies benefit from both increased suspended nutrients and from recruitment of buried phytoplankton cells released from the sediments by the fish bioturbation.[42] Macrophyte growth has also been shown to be inhibited by displacement from the bottom sediments due to fish burrowing.[43]

Rivers and streams edit

River and stream ecosystems show similar responses to bioturbation activities, with chironomid larvae and tubificid worm macroinvertebrates remaining as important benthic agents of bioturbation.[45] These environments can also be subject to strong season bioturbation effects from anadromous fish.[46]

Salmon function as bioturbators on both gravel to sand-sized sediment and a nutrient scale, by moving and re-working sediments in the construction of redds (gravel depressions or "nests" containing eggs buried under a thin layer of sediment) in rivers and streams[46] and by mobilization of nutrients.[47] The construction of salmon redds functions to increase the ease of fluid movement (hydraulic conductivity) and porosity of the stream bed.[47] In select rivers, if salmon congregate in large enough concentrations in a given area of the river, the total sediment transport from redd construction can equal or exceed the sediment transport from flood events.[46] The net effect on sediment movement is the downstream transfer of gravel, sand and finer materials and enhancement of water mixing within the river substrate.[46]

The construction of salmon redds increases sediment and nutrient fluxes through the hyporheic zone (area between surface water and groundwater) of rivers and effects the dispersion and retention of marine derived nutrients (MDN) within the river ecosystem.[47] MDN are delivered to river and stream ecosystems by the fecal matter of spawning salmon and the decaying carcasses of salmon that have completed spawning and died.[47] Numerical modeling suggests that residence time of MDN within a salmon spawning reach is inversely proportional to the amount of redd construction within the river.[47] Measurements of respiration within a salmon-bearing river in Alaska further suggest that salmon bioturbation of the river bed plays a significant role in mobilizing MDN and limiting primary productivity while salmon spawning is active.[44] The river ecosystem was found to switch from a net autotrophic to heterotrophic system in response to decreased primary production and increased respiration.[44] The decreased primary production in this study was attributed to the loss of benthic primary producers who were dislodged due to bioturbation, while increased respiration was thought to be due to increased respiration of organic carbon, also attributed to sediment mobilization from salmon redd construction.[44] While marine derived nutrients are generally thought to increase productivity in riparian and freshwater ecosystems, several studies have suggested that temporal effects of bioturbation should be considered when characterizing salmon influences on nutrient cycles.[44][47]

Marine edit

Major marine bioturbators range from small infaunal invertebrates to fish and marine mammals.[2] In most marine sediments, however, they are dominated by small invertebrates, including polychaetes, bivalves, burrowing shrimp, and amphipods.

Shallow and coastal edit

 
Bioturbation and bioirrigation in the sediment at the bottom of a coastal ecosystems
 
The marine nitrogen cycle

Coastal ecosystems, such as estuaries, are generally highly productive, which results in the accumulation of large quantities of detritus (organic waste). These large quantities, in addition to typically small sediment grain size and dense populations, make bioturbators important in estuarine respiration.[15][48] Bioturbators enhance the transport of oxygen into sediments through irrigation and increase the surface area of oxygenated sediments through burrow construction.[15] Bioturbators also transport organic matter deeper into sediments through general reworking activities and production of fecal matter.[15] This ability to replenish oxygen and other solutes at sediment depth allows for enhanced respiration by both bioturbators as well as the microbial community, thus altering estuarine elemental cycling.[49]

The effects of bioturbation on the nitrogen cycle are well-documented.[50] Coupled denitrification and nitrification are enhanced due to increased oxygen and nitrate delivery to deep sediments and increased surface area across which oxygen and nitrate can be exchanged.[50] The enhanced nitrification-denitrification coupling contributes to greater removal of biologically available nitrogen in shallow and coastal environments, which can be further enhanced by the excretion of ammonium by bioturbators and other organisms residing in bioturbator burrows.[50][51] While both nitrification and denitrification are enhanced by bioturbation, the effects of bioturbators on denitrification rates have been found to be greater than that on rates of nitrification, further promoting the removal of biologically available nitrogen.[52] This increased removal of biologically available nitrogen has been suggested to be linked to increased rates of nitrogen fixation in microenvironments within burrows, as indicated by evidence of nitrogen fixation by sulfate-reducing bacteria via the presence of nifH (nitrogenase) genes.[53]

Bioturbation by walrus feeding is a significant source of sediment and biological community structure and nutrient flux in the Bering Sea.[1] Walruses feed by digging their muzzles into the sediment and extracting clams through powerful suction.[1] By digging through the sediment, walruses rapidly release large amounts of organic material and nutrients, especially ammonium, from the sediment to the water column.[1] Additionally, walrus feeding behavior mixes and oxygenates the sediment and creates pits in the sediment which serve as new habitat structures for invertebrate larvae.[1]

Deep sea edit

Bioturbation is important in the deep sea because deep-sea ecosystem functioning depends on the use and recycling of nutrients and organic inputs from the photic zone.[53][54] In low energy regions (areas with relatively still water), bioturbation is the only force creating heterogeneity in solute concentration and mineral distribution in the sediment.[55] It has been suggested that higher benthic diversity in the deep sea could lead to more bioturbation which, in turn, would increase the transport of organic matter and nutrients to benthic sediments.[53] Through the consumption of surface-derived organic matter, animals living on the sediment surface facilitate the incorporation of particulate organic carbon (POC) into the sediment where it is consumed by sediment dwelling animals and bacteria.[56][57] Incorporation of POC into the food webs of sediment dwelling animals promotes carbon sequestration by removing carbon from the water column and burying it in the sediment.[56] In some deep-sea sediments, intense bioturbation enhances manganese and nitrogen cycling.[55]

Mathematical modelling edit

The role of bioturbators in sediment biogeochemistry makes bioturbation a common parameter in sediment biogeochemical models, which are often numerical models built using ordinary and partial differential equations.[58] Bioturbation is typically represented as DB, or the biodiffusion coefficient, and is described by a diffusion and, sometimes, an advective term.[58] This representation and subsequent variations account for the different modes of mixing by functional groups and bioirrigation that results from them. The biodiffusion coefficient is usually measured using radioactive tracers such as Pb210,[59] radioisotopes from nuclear fallout,[60] introduced particles including glass beads tagged with radioisotopes or inert fluorescent particles,[61] and chlorophyll a.[62] Biodiffusion models are then fit to vertical distributions (profiles) of tracers in sediments to provide values for DB.[63]

Parameterization of bioturbation, however, can vary, as newer and more complex models can be used to fit tracer profiles. Unlike the standard biodiffusion model, these more complex models, such as expanded versions of the biodiffusion model, random walk, and particle-tracking models, can provide more accuracy, incorporate different modes of sediment transport, and account for more spatial heterogeneity.[63][64][65][66]

Evolution edit

The onset of bioturbation had a profound effect on the environment and the evolution of other organisms.[2] Bioturbation is thought to have been an important co-factor of the Cambrian Explosion, during which most major animal phyla appeared in the fossil record over a short time.[2] Predation arose during this time and promoted the development of hard skeletons, for example bristles, spines, and shells, as a form of armored protection.[2] It is hypothesized that bioturbation resulted from this skeleton formation.[2] These new hard parts enabled animals to dig into the sediment to seek shelter from predators, which created an incentive for predators to search for prey in the sediment (see Evolutionary Arms Race).[2] Burrowing species fed on buried organic matter in the sediment which resulted in the evolution of deposit feeding (consumption of organic matter within sediment).[2] Prior to the development of bioturbation, laminated microbial mats were the dominant biological structures of the ocean floor and drove much of the ecosystem functions.[2] As bioturbation increased, burrowing animals disturbed the microbial mat system and created a mixed sediment layer with greater biological and chemical diversity.[2] This greater biological and chemical diversity is thought to have led to the evolution and diversification of seafloor-dwelling species.[2][7]

An alternate, less widely accepted hypothesis for the origin of bioturbation exists. The trace fossil Nenoxites is thought to be the earliest record of bioturbation, predating the Cambrian Period.[67] The fossil is dated to 555 million years, which places it in the Ediacaran Period.[67] The fossil indicates a 5 centimeter depth of bioturbation in muddy sediments by a burrowing worm.[67] This is consistent with food-seeking behavior, as there tended to be more food resources in the mud than the water column.[68] However, this hypothesis requires more precise geological dating to rule out an early Cambrian origin for this specimen.[69]

The evolution of trees during the Devonian Period enhanced soil weathering and increased the spread of soil due to bioturbation by tree roots.[70] Root penetration and uprooting also enhanced soil carbon storage by enabling mineral weathering and the burial of organic matter.[70]

Fossil record edit

 
Planolite fossil

Patterns or traces of bioturbation are preserved in lithified rock. The study of such patterns is called ichnology, or the study of "trace fossils", which, in the case of bioturbators, are fossils left behind by digging or burrowing animals. This can be compared to the footprint left behind by these animals. In some cases bioturbation is so pervasive that it completely obliterates sedimentary structures, such as laminated layers or cross-bedding. Thus, it affects the disciplines of sedimentology and stratigraphy within geology. The study of bioturbator ichnofabrics uses the depth of the fossils, the cross-cutting of fossils, and the sharpness (or how well defined) of the fossil[71] to assess the activity that occurred in old sediments. Typically the deeper the fossil, the better preserved and well defined the specimen.[71]

Important trace fossils from bioturbation have been found in marine sediments from tidal, coastal and deep sea sediments. In addition sand dune, or Eolian, sediments are important for preserving a wide variety of fossils.[72] Evidence of bioturbation has been found in deep-sea sediment cores including into long records, although the act extracting the core can disturb the signs of bioturbation, especially at shallower depths.[73] Arthropods, in particular are important to the geologic record of bioturbation of Eolian sediments. Dune records show traces of burrowing animals as far back as the lower Mesozoic (250 Million years ago),[72] although bioturbation in other sediments has been seen as far back as 550 Ma.[35][36]

Research history edit

Bioturbation's importance for soil processes and geomorphology was first realized by Charles Darwin, who devoted his last scientific book to the subject (The Formation of Vegetable Mould through the Action of Worms).[2] Darwin spread chalk dust over a field to observe changes in the depth of the chalk layer over time.[2] Excavations 30 years after the initial deposit of chalk revealed that the chalk was buried 18 centimeters under the sediment, which indicated a burial rate of 6 millimeters per year.[2] Darwin attributed this burial to the activity of earthworms in the sediment and determined that these disruptions were important in soil formation.[2][3] In 1891, geologist Nathaniel Shaler expanded Darwin's concept to include soil disruption by ants and trees.[3][4] The term "bioturbation" was later coined by Rudolf Richter in 1952 to describe structures in sediment caused by living organisms.[5] Since the 1980s, the term "bioturbation" has been widely used in soil and geomorphology literature to describe the reworking of soil and sediment by plants and animals.[6]

See also edit

References edit

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  2. ^ a b c d e f g h i j k l m n o Meysman, F; Meddelburg, J; Heip, C (2006). "Bioturbation: a fresh look at Darwin's last idea". Trends in Ecology & Evolution. 21 (12): 688–695. doi:10.1016/j.tree.2006.08.002. PMID 16901581.
  3. ^ a b c d e f g h i j k Wilkinson, Marshall T.; Richards, Paul J.; Humphreys, Geoff S. (2009-12-01). "Breaking ground: Pedological, geological, and ecological implications of soil bioturbation". Earth-Science Reviews. 97 (1): 257–272. Bibcode:2009ESRv...97..257W. doi:10.1016/j.earscirev.2009.09.005.
  4. ^ a b c Shaler, N. S., 1891, The origin and nature of soils, in Powell, J. W., ed., USGS 12th Annual report 1890-1891: Washington, D.C., Government Printing Office, p. 213-45.
  5. ^ a b c d e f g h i j Kristensen, E; Penha-Lopes, G; Delefosse, M; Valdemarsen, T; Quintana, CO; Banta, GT (2012-02-02). "What is bioturbation? The need for a precise definition for fauna in aquatic sciences". Marine Ecology Progress Series. 446: 285–302. Bibcode:2012MEPS..446..285K. doi:10.3354/meps09506. ISSN 0171-8630.
  6. ^ a b Humphreys, G. S., and Mitchell, P. B., 1983, A preliminary assessment of the role of bioturbation and rainwash on sandstone hillslopes in the Sydney Basin, in Australian and New Zealand Geomorphology Group, p. 66-80.
  7. ^ a b c d e f g h Pillay, D (2010-06-23). "Expanding the envelope: linking invertebrate bioturbators with micro-evolutionary change". Marine Ecology Progress Series. 409: 301–303. Bibcode:2010MEPS..409..301P. doi:10.3354/meps08628. ISSN 0171-8630.
  8. ^ a b c Braeckman, U; Provoost, P; Gribsholt, B; Gansbeke, D Van; Middelburg, JJ; Soetaert, K; Vincx, M; Vanaverbeke, J (2010-01-28). "Role of macrofauna functional traits and density in biogeochemical fluxes and bioturbation". Marine Ecology Progress Series. 399: 173–186. Bibcode:2010MEPS..399..173B. doi:10.3354/meps08336. hdl:20.500.11755/e43f4d57-cf7f-494d-a724-a4b2aab2a772. ISSN 0171-8630.
  9. ^ Michaud, Emma; Desrosiers, Gaston; Mermillod-Blondin, Florian; Sundby, Bjorn; Stora, Georges (2006-10-03). "The functional group approach to bioturbation: II. The effects of the Macoma balthica community on fluxes of nutrients and dissolved organic carbon across the sediment–water interface". Journal of Experimental Marine Biology and Ecology. 337 (2): 178–189. doi:10.1016/j.jembe.2006.06.025.
  10. ^ Weinberg, James R. (1984-08-28). "Interactions between functional groups in soft-substrata: Do species differences matter?". Journal of Experimental Marine Biology and Ecology. 80 (1): 11–28. doi:10.1016/0022-0981(84)90091-1.
  11. ^ Fauchald, K; Jumars, P (1979). "Diet of worms: a study of polychaete feeding guilds". Oceanography and Marine Biology. 17.
  12. ^ Josefson, Alf B. (1985-12-30). "Distribution of diversity and functional groups of marine benthic infauna in the Skagerrak (eastern North Sea) - Can larval availability affect diversity?". Sarsia. 70 (4): 229–249. doi:10.1080/00364827.1985.10419680. ISSN 0036-4827.
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External links edit

  • Nereis Park (the World of Bioturbation)
  • Worm Cam

bioturbation, defined, reworking, soils, sediments, animals, plants, includes, burrowing, ingestion, defecation, sediment, grains, bioturbating, activities, have, profound, effect, environment, thought, primary, driver, biodiversity, formal, study, bioturbatio. Bioturbation is defined as the reworking of soils and sediments by animals or plants It includes burrowing ingestion and defecation of sediment grains Bioturbating activities have a profound effect on the environment and 2 are thought to be a primary driver of biodiversity 3 The formal study of bioturbation began in the 1800s by Charles Darwin experimenting in his garden 3 The disruption of aquatic sediments and terrestrial soils through bioturbating activities provides significant ecosystem services These include the alteration of nutrients in aquatic sediment and overlying water shelter to other species in the form of burrows in terrestrial and water ecosystems and soil production on land 4 5 Sediment on the left tusk of a walrus Walrus bioturbations in Arctic benthic sediments have large scale ecosystem effects 1 Bioturbators are deemed ecosystem engineers because they alter resource availability to other species through the physical changes they make to their environments 5 This type of ecosystem change affects the evolution of cohabitating species and the environment 5 which is evident in trace fossils left in marine and terrestrial sediments Other bioturbation effects include altering the texture of sediments diagenesis bioirrigation and displacement of microorganisms and non living particles Bioturbation is sometimes confused with the process of bioirrigation however these processes differ in what they are mixing bioirrigation refers to the mixing of water and solutes in sediments and is an effect of bioturbation 3 Walruses salmon and pocket gophers are examples of large bioturbators 6 7 1 Although the activities of these large macrofaunal bioturbators are more conspicuous the dominant bioturbators are small invertebrates such as earthworms polychaetes ghost shrimp mud shrimp and midge larvae 3 8 The activities of these small invertebrates which include burrowing and ingestion and defecation of sediment grains contribute to mixing and the alteration of sediment structure Contents 1 Functional groups 2 Ecological roles 3 Biogeochemical effects 3 1 Organic contaminants 4 Ecosystem impacts 4 1 Terrestrial 4 2 Freshwater 4 2 1 Lakes and ponds 4 2 2 Rivers and streams 4 3 Marine 4 3 1 Shallow and coastal 4 3 2 Deep sea 5 Mathematical modelling 6 Evolution 6 1 Fossil record 7 Research history 8 See also 9 References 10 External linksFunctional groups editBioturbators have been organized by a variety of functional groupings based on either ecological characteristics or biogeochemical effects 9 10 While the prevailing categorization is based on the way bioturbators transport and interact with sediments the various groupings likely stem from the relevance of a categorization mode to a field of study such as ecology or sediment biogeochemistry and an attempt to concisely organize the wide variety of bioturbating organisms in classes that describe their function Examples of categorizations include those based on feeding and motility 11 feeding and biological interactions 12 and mobility modes 13 The most common set of groupings are based on sediment transport and are as follows Gallery diffusers create complex tube networks within the upper sediment layers and transport sediment through feeding burrow construction and general movement throughout their galleries 14 Gallery diffusers are heavily associated with burrowing polychaetes such as Nereis diversicolor and Marenzelleria spp 5 14 Biodiffusers transport sediment particles randomly over short distances as they move through sediments Animals mostly attributed to this category include bivalves such as clams and amphipod species but can also include larger vertebrates such as bottom dwelling fish and rays that feed along the sea floor 5 14 Biodiffusers can be further divided into two subgroups which include epifaunal organisms that live on the surface sediments biodiffusers and surface biodiffusers 5 This subgrouping may also include gallery diffusers 5 reducing the number of functional groups Upward conveyors are oriented head down in sediments where they feed at depth and transport sediment through their guts to the sediment surface 14 Major upward conveyor groups include burrowing polychaetes like the lugworm Arenicola marina and thalassinid shrimps 15 16 Downward conveyor species are oriented with their heads towards the sediment water interface and defecation occurs at depth 14 Their activities transport sediment from the surface to deeper sediment layers as they feed 14 Notable downward conveyors include those in the peanut worm family Sipunculidae 14 Regenerators are categorized by their ability to release sediment to the overlying water column which is then dispersed as they burrow 14 After regenerators abandon their burrows water flow at the sediment surface can push in and collapse the burrow 5 14 Examples of regenerator species include fiddler and ghost crabs 5 Ecological roles edit nbsp The lugworm Arenicola marina nbsp Gobies keeping watch outside a shrimp burrowThe evaluation of the ecological role of bioturbators has largely been species specific 8 However their ability to transport solutes such as dissolved oxygen enhance organic matter decomposition and diagenesis and alter sediment structure has made them important for the survival and colonization by other macrofaunal and microbial communities 8 Microbial communities are greatly influenced by bioturbator activities as increased transport of more energetically favorable oxidants such as oxygen to typically highly reduced sediments at depth alters the microbial metabolic processes occurring around burrows 17 15 As bioturbators burrow they also increase the surface area of sediments across which oxidized and reduced solutes can be exchanged thereby increasing the overall sediment metabolism 18 This increase in sediment metabolism and microbial activity further results in enhanced organic matter decomposition and sediment oxygen uptake 15 In addition to the effects of burrowing activity on microbial communities studies suggest that bioturbator fecal matter provides a highly nutritious food source for microbes and other macrofauna thus enhancing benthic microbial activity 15 This increased microbial activity by bioturbators can contribute to increased nutrient release to the overlying water column 19 Nutrients released from enhanced microbial decomposition of organic matter notably limiting nutrients such as ammonium can have bottom up effects on ecosystems and result in increased growth of phytoplankton and bacterioplankton 19 20 21 Burrows offer protection from predation and harsh environmental conditions 7 For example termites Macrotermes bellicosus burrow and create mounds that have a complex system of air ducts and evaporation devices that create a suitable microclimate in an unfavorable physical environment 22 Many species are attracted to bioturbator burrows because of their protective capabilities 7 The shared use of burrows has enabled the evolution of symbiotic relationships between bioturbators and the many species that utilize their burrows 23 24 For example gobies scale worms and crabs live in the burrows made by innkeeper worms 25 Social interactions provide evidence of co evolution between hosts and their burrow symbionts 26 22 This is exemplified by shrimp goby associations 26 Shrimp burrows provide shelter for gobies and gobies serve as a scout at the mouth of the burrow signaling the presence of potential danger 26 In contrast the blind goby Typhlogobius californiensis lives within the deep portion of Callianassa shrimp burrows where there is not much light 7 The blind goby is an example of a species that is an obligate commensalist meaning their existence depends on the host bioturbator and its burrow 7 Although newly hatched blind gobies have fully developed eyes their eyes become withdrawn and covered by skin as they develop 7 They show evidence of commensal morphological evolution because it is hypothesized that the lack of light in the burrows where the blind gobies reside is responsible for the evolutionary loss of functional eyes 7 Bioturbators can also inhibit the presence of other benthic organisms by smothering exposing other organisms to predators or resource competition 27 28 While thalassinidean shrimps can provide shelter for some organisms and cultivate interspecies relationships within burrows they have also been shown to have strong negative effects on other species especially those of bivalves and surface grazing gastropods because thalassinidean shrimps can smother bivalves when they resuspend sediment They have also been shown to exclude or inhibit polychaetes cumaceans and amphipods 29 30 28 This has become a serious issue in the northwestern United States as ghost and mud shrimp thalassinidean shrimp are considered pests to bivalve aquaculture operations 31 The presence of bioturbators can have both negative and positive effects on the recruitment of larvae of conspecifics those of the same species and those of other species as the resuspension of sediments and alteration of flow at the sediment water interface can affect the ability of larvae to burrow and remain in sediments 32 This effect is largely species specific as species differences in resuspension and burrowing modes have variable effects on fluid dynamics at the sediment water interface 32 Deposit feeding bioturbators may also hamper recruitment by consuming recently settled larvae 33 Biogeochemical effects editSince its onset around 539 million years ago bioturbation has been responsible for changes in ocean chemistry primarily through nutrient cycling 34 Bioturbators played and continue to play an important role in nutrient transport across sediments 34 For example bioturbating animals are hypothesized to have affected the cycling of sulfur in the early oceans According to this hypothesis bioturbating activities had a large effect on the sulfate concentration in the ocean Around the Cambrian Precambrian boundary 539 million years ago animals begin to mix reduced sulfur from ocean sediments to overlying water causing sulfide to oxidize which increased the sulfate composition in the ocean During large extinction events the sulfate concentration in the ocean was reduced Although this is difficult to measure directly seawater sulfur isotope compositions during these times indicates bioturbators influenced the sulfur cycling in the early Earth Bioturbators have also altered phosphorus cycling on geologic scales 35 Bioturbators mix readily available particulate organic phosphorus P deeper into ocean sediment layers which prevents the precipitation of phosphorus mineralization by increasing the sequestration of phosphorus above normal chemical rates The sequestration of phosphorus limits oxygen concentrations by decreasing production on a geologic time scale 36 This decrease in production results in an overall decrease in oxygen levels and it has been proposed that the rise of bioturbation corresponds to a decrease in oxygen levels of that time 36 The negative feedback of animals sequestering phosphorus in the sediments and subsequently reducing oxygen concentrations in the environment limits the intensity of bioturbation in this early environment 36 Organic contaminants edit Bioturbation can either enhance or reduce the flux of contaminants from the sediment to the water column depending on the mechanism of sediment transport 37 In polluted sediments bioturbating animals can mix the surface layer and cause the release of sequestered contaminants into the water column 38 39 Upward conveyor species like polychaete worms are efficient at moving contaminated particles to the surface 40 39 Invasive animals can remobilize contaminants previously considered to be buried at a safe depth In the Baltic Sea the invasive Marenzelleria species of polychaete worms can burrow to 35 50 centimeters which is deeper than native animals thereby releasing previously sequestered contaminants 38 37 However bioturbating animals that live in the sediment infauna can also reduce the flux of contaminants to the water column by burying hydrophobic organic contaminants into the sediment 37 Burial of uncontaminated particles by bioturbating organisms provides more absorptive surfaces to sequester chemical pollutants in the sediments 39 Ecosystem impacts editNutrient cycling is still affected by bioturbation in the modern Earth Some examples in the terrestrial and aquatic ecosystems are below Terrestrial edit nbsp Pocket gopher moundsPlants and animals utilize soil for food and shelter disturbing the upper soil layers and transporting chemically weathered rock called saprolite from the lower soil depths to the surface 3 Terrestrial bioturbation is important in soil production burial organic matter content and downslope transport Tree roots are sources of soil organic matter with root growth and stump decay also contributing to soil transport and mixing 3 Death and decay of tree roots first delivers organic matter to the soil and then creates voids decreasing soil density Tree uprooting causes considerable soil displacement by producing mounds mixing the soil or inverting vertical sections of soil 3 Burrowing animals such as earth worms and small mammals form passageways for air and water transport which changes the soil properties such as the vertical particle size distribution soil porosity and nutrient content 3 Invertebrates that burrow and consume plant detritus help produce an organic rich topsoil known as the soil biomantle and thus contribute to the formation of soil horizons 4 Small mammals such as pocket gophers also play an important role in the production of soil possibly with an equal magnitude to abiotic processes 41 Pocket gophers form above ground mounds which moves soil from the lower soil horizons to the surface exposing minimally weathered rock to surface erosion processes speeding soil formation 3 Pocket gophers are thought to play an important role in the downslope transport of soil as the soil that forms their mounds is more susceptible to erosion and subsequent transport Similar to tree root effects the construction of burrows even when backfilled decreases soil density 41 The formation of surface mounds also buries surface vegetation creating nutrient hotspots when the vegetation decomposes increasing soil organic matter Due to the high metabolic demands of their burrow excavating subterranean lifestyle pocket gophers must consume large amounts of plant material 41 Though this has a detrimental effect on individual plants the net effect of pocket gophers is increased plant growth from their positive effects on soil nutrient content and physical soil properties 41 Freshwater edit Important sources of bioturbation in freshwater ecosystems include benthivorous bottom dwelling fish macroinvertebrates such as worms insect larvae crustaceans and molluscs and seasonal influences from anadromous migrating fish such as salmon Anadromous fish migrate from the sea into fresh water rivers and streams to spawn Macroinvertebrates act as biological pumps for moving material between the sediments and water column feeding on sediment organic matter and transporting mineralized nutrients into the water column 42 Both benthivorous and anadromous fish can affect ecosystems by decreasing primary production through sediment re suspension 42 the subsequent displacement of benthic primary producers and recycling nutrients from the sediment back into the water column 43 44 Lakes and ponds edit nbsp Chironomid larvae The sediments of lake and pond ecosystems are rich in organic matter with higher organic matter and nutrient contents in the sediments than in the overlying water 42 Nutrient re regeneration through sediment bioturbation moves nutrients into the water column thereby enhancing the growth of aquatic plants and phytoplankton primary producers 42 The major nutrients of interest in this flux are nitrogen and phosphorus which often limit the levels of primary production in an ecosystem 42 Bioturbation increases the flux of mineralized inorganic forms of these elements which can be directly used by primary producers In addition bioturbation increases the water column concentrations of nitrogen and phosphorus containing organic matter which can then be consumed by fauna and mineralized 42 Lake and pond sediments often transition from the aerobic oxygen containing character of the overlaying water to the anaerobic without oxygen conditions of the lower sediment over sediment depths of only a few millimeters therefore even bioturbators of modest size can affect this transition of the chemical characteristics of sediments 42 By mixing anaerobic sediments into the water column bioturbators allow aerobic processes to interact with the re suspended sediments and the newly exposed bottom sediment surfaces 42 Macroinvertebrates including chironomid non biting midges larvae and tubificid worms detritus worms are important agents of bioturbation in these ecosystems and have different effects based on their respective feeding habits Tubificid worms do not form burrows they are upward conveyors Chironomids on the other hand form burrows in the sediment acting as bioirrigators and aerating the sediments and are downward conveyors This activity combined with chironomid s respiration within their burrows decrease available oxygen in the sediment and increase the loss of nitrates through enhanced rates of denitrification 42 The increased oxygen input to sediments by macroinvertebrate bioirrigation coupled with bioturbation at the sediment water interface complicates the total flux of phosphorus While bioturbation results in a net flux of phosphorus into the water column the bio irrigation of the sediments with oxygenated water enhances the adsorption of phosphorus onto iron oxide compounds thereby reducing the total flux of phosphorus into the water column 42 The presence of macroinvertebrates in sediment can initiate bioturbation due to their status as an important food source for benthivorous fish such as carp 42 Of the bioturbating benthivorous fish species carp in particular are important ecosystem engineers and their foraging and burrowing activities can alter the water quality characteristics of ponds and lakes 43 Carp increase water turbidity by the re suspension of benthic sediments This increased turbidity limits light penetration and coupled with increased nutrient flux from the sediment into the water column inhibits the growth of macrophytes aquatic plants favoring the growth of phytoplankton in the surface waters Surface phytoplankton colonies benefit from both increased suspended nutrients and from recruitment of buried phytoplankton cells released from the sediments by the fish bioturbation 42 Macrophyte growth has also been shown to be inhibited by displacement from the bottom sediments due to fish burrowing 43 Rivers and streams edit River and stream ecosystems show similar responses to bioturbation activities with chironomid larvae and tubificid worm macroinvertebrates remaining as important benthic agents of bioturbation 45 These environments can also be subject to strong season bioturbation effects from anadromous fish 46 Salmon function as bioturbators on both gravel to sand sized sediment and a nutrient scale by moving and re working sediments in the construction of redds gravel depressions or nests containing eggs buried under a thin layer of sediment in rivers and streams 46 and by mobilization of nutrients 47 The construction of salmon redds functions to increase the ease of fluid movement hydraulic conductivity and porosity of the stream bed 47 In select rivers if salmon congregate in large enough concentrations in a given area of the river the total sediment transport from redd construction can equal or exceed the sediment transport from flood events 46 The net effect on sediment movement is the downstream transfer of gravel sand and finer materials and enhancement of water mixing within the river substrate 46 The construction of salmon redds increases sediment and nutrient fluxes through the hyporheic zone area between surface water and groundwater of rivers and effects the dispersion and retention of marine derived nutrients MDN within the river ecosystem 47 MDN are delivered to river and stream ecosystems by the fecal matter of spawning salmon and the decaying carcasses of salmon that have completed spawning and died 47 Numerical modeling suggests that residence time of MDN within a salmon spawning reach is inversely proportional to the amount of redd construction within the river 47 Measurements of respiration within a salmon bearing river in Alaska further suggest that salmon bioturbation of the river bed plays a significant role in mobilizing MDN and limiting primary productivity while salmon spawning is active 44 The river ecosystem was found to switch from a net autotrophic to heterotrophic system in response to decreased primary production and increased respiration 44 The decreased primary production in this study was attributed to the loss of benthic primary producers who were dislodged due to bioturbation while increased respiration was thought to be due to increased respiration of organic carbon also attributed to sediment mobilization from salmon redd construction 44 While marine derived nutrients are generally thought to increase productivity in riparian and freshwater ecosystems several studies have suggested that temporal effects of bioturbation should be considered when characterizing salmon influences on nutrient cycles 44 47 Marine edit Major marine bioturbators range from small infaunal invertebrates to fish and marine mammals 2 In most marine sediments however they are dominated by small invertebrates including polychaetes bivalves burrowing shrimp and amphipods Shallow and coastal edit nbsp Bioturbation and bioirrigation in the sediment at the bottom of a coastal ecosystems nbsp The marine nitrogen cycleCoastal ecosystems such as estuaries are generally highly productive which results in the accumulation of large quantities of detritus organic waste These large quantities in addition to typically small sediment grain size and dense populations make bioturbators important in estuarine respiration 15 48 Bioturbators enhance the transport of oxygen into sediments through irrigation and increase the surface area of oxygenated sediments through burrow construction 15 Bioturbators also transport organic matter deeper into sediments through general reworking activities and production of fecal matter 15 This ability to replenish oxygen and other solutes at sediment depth allows for enhanced respiration by both bioturbators as well as the microbial community thus altering estuarine elemental cycling 49 The effects of bioturbation on the nitrogen cycle are well documented 50 Coupled denitrification and nitrification are enhanced due to increased oxygen and nitrate delivery to deep sediments and increased surface area across which oxygen and nitrate can be exchanged 50 The enhanced nitrification denitrification coupling contributes to greater removal of biologically available nitrogen in shallow and coastal environments which can be further enhanced by the excretion of ammonium by bioturbators and other organisms residing in bioturbator burrows 50 51 While both nitrification and denitrification are enhanced by bioturbation the effects of bioturbators on denitrification rates have been found to be greater than that on rates of nitrification further promoting the removal of biologically available nitrogen 52 This increased removal of biologically available nitrogen has been suggested to be linked to increased rates of nitrogen fixation in microenvironments within burrows as indicated by evidence of nitrogen fixation by sulfate reducing bacteria via the presence of nifH nitrogenase genes 53 Bioturbation by walrus feeding is a significant source of sediment and biological community structure and nutrient flux in the Bering Sea 1 Walruses feed by digging their muzzles into the sediment and extracting clams through powerful suction 1 By digging through the sediment walruses rapidly release large amounts of organic material and nutrients especially ammonium from the sediment to the water column 1 Additionally walrus feeding behavior mixes and oxygenates the sediment and creates pits in the sediment which serve as new habitat structures for invertebrate larvae 1 Deep sea edit Bioturbation is important in the deep sea because deep sea ecosystem functioning depends on the use and recycling of nutrients and organic inputs from the photic zone 53 54 In low energy regions areas with relatively still water bioturbation is the only force creating heterogeneity in solute concentration and mineral distribution in the sediment 55 It has been suggested that higher benthic diversity in the deep sea could lead to more bioturbation which in turn would increase the transport of organic matter and nutrients to benthic sediments 53 Through the consumption of surface derived organic matter animals living on the sediment surface facilitate the incorporation of particulate organic carbon POC into the sediment where it is consumed by sediment dwelling animals and bacteria 56 57 Incorporation of POC into the food webs of sediment dwelling animals promotes carbon sequestration by removing carbon from the water column and burying it in the sediment 56 In some deep sea sediments intense bioturbation enhances manganese and nitrogen cycling 55 Mathematical modelling editThe role of bioturbators in sediment biogeochemistry makes bioturbation a common parameter in sediment biogeochemical models which are often numerical models built using ordinary and partial differential equations 58 Bioturbation is typically represented as DB or the biodiffusion coefficient and is described by a diffusion and sometimes an advective term 58 This representation and subsequent variations account for the different modes of mixing by functional groups and bioirrigation that results from them The biodiffusion coefficient is usually measured using radioactive tracers such as Pb210 59 radioisotopes from nuclear fallout 60 introduced particles including glass beads tagged with radioisotopes or inert fluorescent particles 61 and chlorophyll a 62 Biodiffusion models are then fit to vertical distributions profiles of tracers in sediments to provide values for DB 63 Parameterization of bioturbation however can vary as newer and more complex models can be used to fit tracer profiles Unlike the standard biodiffusion model these more complex models such as expanded versions of the biodiffusion model random walk and particle tracking models can provide more accuracy incorporate different modes of sediment transport and account for more spatial heterogeneity 63 64 65 66 Evolution editThe onset of bioturbation had a profound effect on the environment and the evolution of other organisms 2 Bioturbation is thought to have been an important co factor of the Cambrian Explosion during which most major animal phyla appeared in the fossil record over a short time 2 Predation arose during this time and promoted the development of hard skeletons for example bristles spines and shells as a form of armored protection 2 It is hypothesized that bioturbation resulted from this skeleton formation 2 These new hard parts enabled animals to dig into the sediment to seek shelter from predators which created an incentive for predators to search for prey in the sediment see Evolutionary Arms Race 2 Burrowing species fed on buried organic matter in the sediment which resulted in the evolution of deposit feeding consumption of organic matter within sediment 2 Prior to the development of bioturbation laminated microbial mats were the dominant biological structures of the ocean floor and drove much of the ecosystem functions 2 As bioturbation increased burrowing animals disturbed the microbial mat system and created a mixed sediment layer with greater biological and chemical diversity 2 This greater biological and chemical diversity is thought to have led to the evolution and diversification of seafloor dwelling species 2 7 An alternate less widely accepted hypothesis for the origin of bioturbation exists The trace fossil Nenoxites is thought to be the earliest record of bioturbation predating the Cambrian Period 67 The fossil is dated to 555 million years which places it in the Ediacaran Period 67 The fossil indicates a 5 centimeter depth of bioturbation in muddy sediments by a burrowing worm 67 This is consistent with food seeking behavior as there tended to be more food resources in the mud than the water column 68 However this hypothesis requires more precise geological dating to rule out an early Cambrian origin for this specimen 69 The evolution of trees during the Devonian Period enhanced soil weathering and increased the spread of soil due to bioturbation by tree roots 70 Root penetration and uprooting also enhanced soil carbon storage by enabling mineral weathering and the burial of organic matter 70 Fossil record edit nbsp Planolite fossilPatterns or traces of bioturbation are preserved in lithified rock The study of such patterns is called ichnology or the study of trace fossils which in the case of bioturbators are fossils left behind by digging or burrowing animals This can be compared to the footprint left behind by these animals In some cases bioturbation is so pervasive that it completely obliterates sedimentary structures such as laminated layers or cross bedding Thus it affects the disciplines of sedimentology and stratigraphy within geology The study of bioturbator ichnofabrics uses the depth of the fossils the cross cutting of fossils and the sharpness or how well defined of the fossil 71 to assess the activity that occurred in old sediments Typically the deeper the fossil the better preserved and well defined the specimen 71 Important trace fossils from bioturbation have been found in marine sediments from tidal coastal and deep sea sediments In addition sand dune or Eolian sediments are important for preserving a wide variety of fossils 72 Evidence of bioturbation has been found in deep sea sediment cores including into long records although the act extracting the core can disturb the signs of bioturbation especially at shallower depths 73 Arthropods in particular are important to the geologic record of bioturbation of Eolian sediments Dune records show traces of burrowing animals as far back as the lower Mesozoic 250 Million years ago 72 although bioturbation in other sediments has been seen as far back as 550 Ma 35 36 Research history editBioturbation s importance for soil processes and geomorphology was first realized by Charles Darwin who devoted his last scientific book to the subject The Formation of Vegetable Mould through the Action of Worms 2 Darwin spread chalk dust over a field to observe changes in the depth of the chalk layer over time 2 Excavations 30 years after the initial deposit of chalk revealed that the chalk was buried 18 centimeters under the sediment which indicated a burial rate of 6 millimeters per year 2 Darwin attributed this burial to the activity of earthworms in the sediment and determined that these disruptions were important in soil formation 2 3 In 1891 geologist Nathaniel Shaler expanded Darwin s concept to include soil disruption by ants and trees 3 4 The term bioturbation was later coined by Rudolf Richter in 1952 to describe structures in sediment caused by living organisms 5 Since the 1980s the term bioturbation has been widely used in soil and geomorphology literature to describe the reworking of soil and sediment by plants and animals 6 See also editArgillipedoturbation Bioirrigation ZoophycosReferences edit a b c d e f Ray G Carleton McCormick Ray Jerry Berg Peter Epstein Howard E 2006 Pacific walrus Benthic bioturbator of Beringia Journal of Experimental Marine Biology and Ecology 330 1 403 419 doi 10 1016 j jembe 2005 12 043 a b c d e f g h i j k l m n o Meysman F Meddelburg J Heip C 2006 Bioturbation a fresh look at Darwin s last idea Trends in Ecology amp Evolution 21 12 688 695 doi 10 1016 j tree 2006 08 002 PMID 16901581 a b c d e f g h i j k Wilkinson Marshall T Richards Paul J Humphreys Geoff S 2009 12 01 Breaking ground Pedological geological and ecological implications of soil bioturbation Earth Science Reviews 97 1 257 272 Bibcode 2009ESRv 97 257W doi 10 1016 j earscirev 2009 09 005 a b c Shaler N S 1891 The origin and nature of soils in Powell J W ed USGS 12th Annual report 1890 1891 Washington D C Government Printing Office p 213 45 a b c d e f g h i j Kristensen E Penha Lopes G Delefosse M Valdemarsen T Quintana CO Banta GT 2012 02 02 What is bioturbation The need for a precise definition for fauna in aquatic sciences 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2002 The role of pocket gophers as subterranean ecosystem engineers Trends in Ecology amp Evolution 17 1 44 49 doi 10 1016 s0169 5347 01 02329 1 a b c d e f g h i j k l Adamek Zdenek Marsalek Blahoslav 2013 02 01 Bioturbation of sediments by benthic macroinvertebrates and fish and its implication for pond ecosystems a review Aquaculture International 21 1 1 17 doi 10 1007 s10499 012 9527 3 ISSN 0967 6120 S2CID 15097632 a b c Matsuzaki Shin ichiro S Usio Nisikawa Takamura Noriko Washitani Izumi 2007 01 01 Effects of common carp on nutrient dynamics and littoral community composition roles of excretion and bioturbation Fundamental and Applied Limnology 168 1 27 38 doi 10 1127 1863 9135 2007 0168 0027 S2CID 84815294 a b c d e Holtgrieve Gordon W Schindler Daniel E 2011 02 01 Marine derived nutrients bioturbation and ecosystem metabolism reconsidering the role of salmon in streams Ecology 92 2 373 385 doi 10 1890 09 1694 1 ISSN 1939 9170 PMID 21618917 Mermillod Blondin Florian Gaudet Jean Paul Gerino Magali Desrosiers Gaston Jose Jacques Chatelliers Michel Creuze des 2004 07 01 Relative influence of bioturbation and predation on organic matter processing in river sediments a microcosm experiment Freshwater Biology 49 7 895 912 doi 10 1111 j 1365 2427 2004 01233 x ISSN 1365 2427 S2CID 43255065 a b c d Gottesfeld AS Hassan MA Tunnicliffe JF 2008 Salmon bioturbation and stream process American Fisheries Society Symposium 65 via researchgate a b c d e f Buxton Todd H Buffington John M Tonina Daniele Fremier Alexander K Yager Elowyn M 2015 04 13 Modeling the influence of salmon spawning on hyporheic exchange of marine derived nutrients in gravel stream beds Canadian Journal of Fisheries and Aquatic Sciences 72 8 1146 1158 doi 10 1139 cjfas 2014 0413 ISSN 0706 652X Interactions between macro and microorganisms in marine sediments American Geophysical Union Washington D C American Geophysical Union 2005 ISBN 9781118665442 OCLC 798834896 a href Template Cite book html title Template Cite book cite book a CS1 maint others link Aller Robert C 1988 13 Benthic fauna and biogeochemical processes in marine sediments the role of burrow structures In Blackburn T H Sorensen J eds Nitrogen Cycling in Coastal Marine Environments John Wiley amp Sons Ltd pp 301 338 a b c Kristensen Erik Jensen Mikael Hjorth Andersen Torben Kjaer 1985 The impact of polychaete Nereis virens Sars burrows on nitrification and nitrate reduction in estuarine sediments Journal of Experimental Marine Biology and Ecology 85 1 75 91 doi 10 1016 0022 0981 85 90015 2 Henriksen K Rasmussen M B Jensen A 1983 Effect of Bioturbation on Microbial Nitrogen Transformations in the Sediment and Fluxes of Ammonium and Nitrate to the Overlaying Water Ecological Bulletins 35 193 205 JSTOR 20112854 Kristensen Erik 1985 Oxygen and Inorganic Nitrogen Exchange in a Nereis virens Polychaeta Bioturbated Sediment Water System Journal of Coastal Research 1 2 109 116 JSTOR 4297030 a b c Danovaro Roberto Gambi Cristina Dell Anno Antonio Corinaldesi Cinzia Fraschetti Simonetta Vanreusel Ann Vincx Magda Gooday Andrew J 2008 Exponential Decline of Deep Sea Ecosystem Functioning Linked to Benthic Biodiversity Loss Current Biology 18 1 1 8 doi 10 1016 j cub 2007 11 056 PMID 18164201 Morys C Forster S Graf G 2016 09 28 Variability of bioturbation in various sediment types and on different spatial scales in the southwestern Baltic Sea Marine Ecology Progress Series 557 31 49 Bibcode 2016MEPS 557 31M doi 10 3354 meps11837 ISSN 0171 8630 a b Aller Robert C Hall Per O J Rude Peter D Aller J Y 1998 Biogeochemical heterogeneity and suboxic diagenesis in hemipelagic sediments of the Panama Basin Deep Sea Research Part I Oceanographic Research Papers 45 1 133 165 Bibcode 1998DSRI 45 133A doi 10 1016 s0967 0637 97 00049 6 a b Vardaro Michael F Ruhl Henry A Smith Kenneth Jr L 2009 11 01 Climate variation carbon flux and bioturbation in the abyssal North Pacific Limnology and Oceanography 54 6 2081 2088 Bibcode 2009LimOc 54 2081V doi 10 4319 lo 2009 54 6 2081 ISSN 1939 5590 S2CID 53613556 Smith Craig R Berelson Will Demaster David J Dobbs Fred C Hammond Doug Hoover Daniel J Pope Robert H Stephens Mark 1997 Latitudinal variations in benthic processes in the abyssal equatorial Pacific control by biogenic particle flux Deep Sea Research Part II Topical Studies in Oceanography 44 9 10 2295 2317 Bibcode 1997DSRII 44 2295S doi 10 1016 s0967 0645 97 00022 2 a b P Boudreau Bernard 1997 Diagenetic Models and Their Implementation Modelling Transport and Reactions in Aquatic Sediments Berlin Heidelberg Springer Berlin Heidelberg ISBN 978 3642643996 OCLC 851842693 a href Template Cite book html title Template Cite book cite book a CS1 maint multiple names authors list link Sharma P Gardner L R Moore W S Bollinger M S 1987 03 01 Sedimentation and bioturbation in a salt marsh as revealed by 210Pb 137Cs and 7Be studies12 Limnology and Oceanography 32 2 313 326 Bibcode 1987LimOc 32 313S doi 10 4319 lo 1987 32 2 0313 ISSN 1939 5590 Bunzl K 2002 Transport of fallout radiocesium in the soil by bioturbation a random walk model and application to a forest soil with a high abundance of earthworms Science of the Total Environment 293 1 3 191 200 Bibcode 2002ScTEn 293 191B doi 10 1016 s0048 9697 02 00014 1 PMID 12109472 Solan Martin Wigham Benjamin D Hudson Ian R Kennedy Robert Coulon Christopher H Norling Karl Nilsson Hans C Rosenberg Rutger 2004 04 28 In situ quantification of bioturbation using time lapse fluorescent sediment profile imaging f SPI luminophore tracers and model simulation Marine Ecology Progress Series 271 1 12 Bibcode 2004MEPS 271 1S doi 10 3354 meps271001 Gerino M Aller R C Lee C Cochran J K Aller J Y Green M A Hirschberg D 1998 Comparison of Different Tracers and Methods Used to Quantify Bioturbation During a Spring Bloom 234 Thorium Luminophores and Chlorophylla Estuarine Coastal and Shelf Science 46 4 531 547 Bibcode 1998ECSS 46 531G doi 10 1006 ecss 1997 0298 a b Reed Daniel C Huang Katherine Boudreau Bernard P Meysman Filip J R 2006 Steady state tracer dynamics in a lattice automaton model of bioturbation Geochimica et Cosmochimica Acta 70 23 5855 5867 Bibcode 2006GeCoA 70 5855R doi 10 1016 j gca 2006 03 026 Aquino Tomas Roche Kevin R Aubeneau Antoine Packman Aaron I Bolster Diogo 2017 A Process Based Model for Bioturbation Induced Mixing Scientific Reports 7 1 14287 Bibcode 2017NatSR 714287A doi 10 1038 s41598 017 14705 1 ISSN 2045 2322 PMC 5660215 PMID 29079758 Wheatcroft R A Jumars P A Smith C R Nowell A R M 1990 02 01 A mechanistic view of the particulate biodiffusion coefficient Step lengths rest periods and transport directions Journal of Marine Research 48 1 177 207 doi 10 1357 002224090784984560 S2CID 129173448 Delmotte Sebastien Gerino Magali Thebault Jean Marc Meysman Filip J R 2008 03 01 Modeling effects of patchiness and biological variability on transport rates within bioturbated sediments Journal of Marine Research 66 2 191 218 doi 10 1357 002224008785837158 a b c Rogov Vladimir Marusin Vasiliy Bykova Natalia Goy Yuriy Nagovitsin Konstantin Kochnev Boris Karlova Galina Grazhdankin Dmitriy 2012 05 01 The oldest evidence of bioturbation on Earth Geology 40 5 395 398 Bibcode 2012Geo 40 395R doi 10 1130 g32807 1 ISSN 0091 7613 Gingras Murray Hagadorn James W Seilacher Adolf Lalonde Stefan V Pecoits Ernesto Petrash Daniel Konhauser Kurt O 2011 05 15 Possible evolution of mobile animals in association with microbial mats Nature Geoscience 4 6 372 375 Bibcode 2011NatGe 4 372G CiteSeerX 10 1 1 717 5339 doi 10 1038 ngeo1142 ISSN 1752 0908 Brasier Martin D McIlroy Duncan Liu Alexander G Antcliffe Jonathan B Menon Latha R 2013 The oldest evidence of bioturbation on Earth COMMENT Geology 41 5 e289 Bibcode 2013Geo 41E 289B doi 10 1130 g33606c 1 a b Algeo Thomas J Scheckler Stephen E 1998 01 29 Terrestrial marine teleconnections in the Devonian links between the evolution of land plants weathering processes and marine anoxic events Philosophical Transactions of the Royal Society of London B Biological Sciences 353 1365 113 130 doi 10 1098 rstb 1998 0195 ISSN 0962 8436 PMC 1692181 a b Taylor A M Goldring R 1993 Description and analysis of bioturbation and ichnofabric Journal of the Geological Society 150 1 141 148 Bibcode 1993JGSoc 150 141T doi 10 1144 gsjgs 150 1 0141 S2CID 129182527 a b Ahlbrandt T S Andrews S Gwynne D T 1978 Bioturbation in eolian deposits Journal of Sedimentary Research 48 3 doi 10 1306 212f7586 2b24 11d7 8648000102c1865d Hertweck G Liebezeit G 2007 Bioturbation structures of polychaetes in modern shallow marine environments and their analogues to Chondrites group traces Palaeogeography Palaeoclimatology Palaeoecology 245 3 382 389 Bibcode 2007PPP 245 382H doi 10 1016 j palaeo 2006 09 001 External links editNereis Park the World of Bioturbation Worm Cam Retrieved from https en wikipedia org w index php title Bioturbation amp oldid 1193495289, wikipedia, wiki, book, books, 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