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Symbiogenesis

Symbiogenesis (endosymbiotic theory, or serial endosymbiotic theory[2]) is the leading evolutionary theory of the origin of eukaryotic cells from prokaryotic organisms.[3] The theory holds that mitochondria, plastids such as chloroplasts, and possibly other organelles of eukaryotic cells are descended from formerly free-living prokaryotes (more closely related to the Bacteria than to the Archaea) taken one inside the other in endosymbiosis. Mitochondria appear to be phylogenetically related to Rickettsiales bacteria, while chloroplasts are thought to be related to cyanobacteria.

In the theory of symbiogenesis, a merger of an archaean and an aerobic bacterium created the eukaryotes, with aerobic mitochondria; a second merger added chloroplasts, creating the green plants. The original theory by Lynn Margulis proposed an additional preliminary merger, but this is poorly supported and not now generally believed.[1]

The idea that chloroplasts were originally independent organisms that merged into a symbiotic relationship with other one-celled organisms dates back to the 19th century, when it was espoused by researchers such as Andreas Schimper. The endosymbiotic theory was articulated in 1905 and 1910 by the Russian botanist Konstantin Mereschkowski, and advanced and substantiated with microbiological evidence by Lynn Margulis in 1967.

Among the many lines of evidence supporting symbiogenesis are that new mitochondria and plastids are formed only by splitting in two, and that cells cannot create new ones otherwise; that the transport proteins called porins are found in the outer membranes of mitochondria, chloroplasts, and bacterial cell membranes; that cardiolipin is found only in the inner mitochondrial membrane and bacterial cell membranes; and that some mitochondria and plastids contain single circular DNA molecules similar to the circular chromosomes of bacteria.

History edit

 
Konstantin Mereschkowski's 1905 tree-of-life diagram, showing the origin of complex life-forms by two episodes of symbiogenesis, the incorporation of symbiotic bacteria to form successively nuclei and chloroplasts[4]

The Russian botanist Konstantin Mereschkowski first outlined the theory of symbiogenesis (from Greek: σύν syn "together", βίος bios "life", and γένεσις genesis "origin, birth") in his 1905 work, The nature and origins of chromatophores in the plant kingdom, and then elaborated it in his 1910 The Theory of Two Plasms as the Basis of Symbiogenesis, a New Study of the Origins of Organisms.[5][6][7] Mereschkowski proposed that complex life-forms had originated by two episodes of symbiogenesis, the incorporation of symbiotic bacteria to form successively nuclei and chloroplasts.[4] Mereschkowski knew of the work of botanist Andreas Schimper. In 1883, Schimper had observed that the division of chloroplasts in green plants closely resembled that of free-living cyanobacteria. Schimper had tentatively proposed (in a footnote) that green plants had arisen from a symbiotic union of two organisms.[8] In 1918 the French scientist Paul Jules Portier published Les Symbiotes, in which he claimed that the mitochondria originated from a symbiosis process.[9][10] Ivan Wallin advocated the idea of an endosymbiotic origin of mitochondria in the 1920s.[11][12] The Russian botanist Boris Kozo-Polyansky became the first to explain the theory in terms of Darwinian evolution.[13] In his 1924 book A New Principle of Biology. Essay on the Theory of Symbiogenesis,[14] he wrote, "The theory of symbiogenesis is a theory of selection relying on the phenomenon of symbiosis."[15]

These theories did not gain traction until more detailed electron-microscopic comparisons between cyanobacteria and chloroplasts were made, such as by Hans Ris in 1961 and 1962.[16][17] These, combined with the discovery that plastids and mitochondria contain their own DNA,[18] led to a resurrection of the idea of symbiogenesis in the 1960s. Lynn Margulis advanced and substantiated the theory with microbiological evidence in a 1967 paper, On the origin of mitosing cells.[19] In her 1981 work Symbiosis in Cell Evolution she argued that eukaryotic cells originated as communities of interacting entities, including endosymbiotic spirochaetes that developed into eukaryotic flagella and cilia. This last idea has not received much acceptance, because flagella lack DNA and do not show ultrastructural similarities to bacteria or to archaea (see also: Evolution of flagella and Prokaryotic cytoskeleton). According to Margulis and Dorion Sagan,[20] "Life did not take over the globe by combat, but by networking" (i.e., by cooperation). Christian de Duve proposed that the peroxisomes may have been the first endosymbionts, allowing cells to withstand growing amounts of free molecular oxygen in the Earth's atmosphere. However, it now appears that peroxisomes may be formed de novo, contradicting the idea that they have a symbiotic origin.[21] The fundamental theory of symbiogenesis as the origin of mitochondria and chloroplasts is now widely accepted.[3]

From endosymbionts to organelles edit

 
An autogenous model of the origin of eukaryotic cells. Evidence now shows that a mitochondrion-less eukaryote has never existed, i.e. the nucleus was acquired at the same time as the mitochondria.[22]

Biologists usually distinguish organelles from endosymbionts – whole organisms living inside other organisms – by their reduced genome sizes.[23] As an endosymbiont evolves into an organelle, most of its genes are transferred to the host cell genome.[24] The host cell and organelle therefore need to develop a transport mechanism that enables the return of the protein products needed by the organelle but now manufactured by the cell.[25]

Free-living ancestors edit

Alphaproteobacteria were formerly thought to be the free-living organisms most closely related to mitochondria.[25] Later research indicates that mitochondria are most closely related to Pelagibacterales bacteria, in particular, those in the SAR11 clade.[26][27]

Nitrogen-fixing filamentous cyanobacteria are the free-living organisms most closely related to plastids.[25][28][29]

Both cyanobacteria and alphaproteobacteria maintain a large (>6 Mb) genome encoding thousands of proteins.[25] Plastids and mitochondria exhibit a dramatic reduction in genome size when compared with their bacterial relatives.[25] Chloroplast genomes in photosynthetic organisms are normally 120–200 kb[30] encoding 20–200 proteins[25] and mitochondrial genomes in humans are approximately 16 kb and encode 37 genes, 13 of which are proteins.[31] Using the example of the freshwater amoeboid, however, Paulinella chromatophora, which contains chromatophores found to be evolved from cyanobacteria, Keeling and Archibald argue that this is not the only possible criterion; another is that the host cell has assumed control of the regulation of the former endosymbiont's division, thereby synchronizing it with the cell's own division.[23] Nowack and her colleagues gene sequenced the chromatophore (1.02 Mb) and found that only 867 proteins were encoded by these photosynthetic cells. Comparisons with their closest free living cyanobacteria of the genus Synechococcus (having a genome size 3 Mb, with 3300 genes) revealed that chromatophores had undergone a drastic genome shrinkage. Chromatophores contained genes that were accountable for photosynthesis but were deficient in genes that could carry out other biosynthetic functions; this observation suggests that these endosymbiotic cells are highly dependent on their hosts for their survival and growth mechanisms. Thus, these chromatophores were found to be non-functional for organelle-specific purposes when compared with mitochondria and plastids. This distinction could have promoted the early evolution of photosynthetic organelles.[32]

The loss of genetic autonomy, that is, the loss of many genes from endosymbionts, occurred very early in evolutionary time.[33] Taking into account the entire original endosymbiont genome, there are three main possible fates for genes over evolutionary time. The first is the loss of functionally redundant genes,[33] in which genes that are already represented in the nucleus are eventually lost. The second is the transfer of genes to the nucleus, while the third is that genes remain in the organelle that was once an organism.[25][33][34][35][36] The loss of autonomy and integration of the endosymbiont with its host can be primarily attributed to nuclear gene transfer.[36] As organelle genomes have been greatly reduced over evolutionary time, nuclear genes have expanded and become more complex.[25] As a result, many plastid and mitochondrial processes are driven by nuclear encoded gene products.[25] In addition, many nuclear genes originating from endosymbionts have acquired novel functions unrelated to their organelles.[25][36]

Gene transfer mechanisms edit

The mechanisms of gene transfer are not fully known; however, multiple hypotheses exist to explain this phenomenon. The possible mechanisms include the Complementary DNA (cDNA) hypothesis and the bulk flow hypothesis.[25][34]

The cDNA hypothesis involves the use of messenger RNA (mRNAs) to transport genes from organelles to the nucleus where they are converted to cDNA and incorporated into the genome.[25][34] The cDNA hypothesis is based on studies of the genomes of flowering plants. Protein coding RNAs in mitochondria are spliced and edited using organelle-specific splice and editing sites. Nuclear copies of some mitochondrial genes, however, do not contain organelle-specific splice sites, suggesting a processed mRNA intermediate. The cDNA hypothesis has since been revised as edited mitochondrial cDNAs are unlikely to recombine with the nuclear genome and are more likely to recombine with their native mitochondrial genome. If the edited mitochondrial sequence recombines with the mitochondrial genome, mitochondrial splice sites would no longer exist in the mitochondrial genome. Any subsequent nuclear gene transfer would therefore also lack mitochondrial splice sites.[25]

The bulk flow hypothesis is the alternative to the cDNA hypothesis, stating that escaped DNA, rather than mRNA, is the mechanism of gene transfer.[25][34] According to this hypothesis, disturbances to organelles, including autophagy (normal cell destruction), gametogenesis (the formation of gametes), and cell stress release DNA which is imported into the nucleus and incorporated into the nuclear DNA using non-homologous end joining (repair of double stranded breaks).[34] For example, in the initial stages of endosymbiosis, due to a lack of major gene transfer, the host cell had little to no control over the endosymbiont. The endosymbiont underwent cell division independently of the host cell, resulting in many "copies" of the endosymbiont within the host cell. Some of the endosymbionts lysed (burst), and high levels of DNA were incorporated into the nucleus. A similar mechanism is thought to occur in tobacco plants, which show a high rate of gene transfer and whose cells contain multiple chloroplasts.[33] In addition, the bulk flow hypothesis is also supported by the presence of non-random clusters of organelle genes, suggesting the simultaneous movement of multiple genes.[34]

Ford Doolittle proposed that (whatever the mechanism) gene transfer behaves like a ratchet, resulting in unidirectional transfer of genes from the organelle to the nuclear genome.[37] When genetic material from an organelle is incorporated into the nuclear genome, either the organelle or nuclear copy of the gene may be lost from the population. If the organelle copy is lost and this is fixed, or lost through genetic drift, a gene is successfully transferred to the nucleus. If the nuclear copy is lost, horizontal gene transfer can occur again, and the cell can ‘try again’ to have successful transfer of genes to the nucleus.[37] In this ratchet-like way, genes from an organelle would be expected to accumulate in the nuclear genome over evolutionary time.[37]

Endosymbiosis of protomitochondria edit

Endosymbiotic theory for the origin of mitochondria suggests that the proto-eukaryote engulfed a protomitochondrion, and this endosymbiont became an organelle, a major step in eukaryogenesis, the creation of the eukaryotes.[38]

Mitochondria edit

 
Internal symbiont: mitochondrion has a matrix and membranes, like a free-living alphaproteobacterial cell, from which it may derive.

Mitochondria are organelles that synthesize the energy-carrying molecule ATP for the cell by metabolizing carbon-based macromolecules.[39] The presence of DNA in mitochondria and proteins, derived from mtDNA, suggest that this organelle may have been a prokaryote prior to its integration into the proto-eukaryote.[40] Mitochondria are regarded as organelles rather than endosymbionts because mitochondria and the host cells share some parts of their genome, undergo division simultaneously, and provide each other with means to produce energy.[40] The endomembrane system and nuclear membrane were hypothesized to have derived from the protomitochondria.[41][42][43]

Nuclear membrane edit

The presence of a nucleus is one major difference between eukaryotes and prokaryotes.[44] Some conserved nuclear proteins between eukaryotes and prokaryotes suggest that these two types had a common ancestor.[45] Another theory behind nucleation is that early nuclear membrane proteins caused the cell membrane to fold and form a sphere with pores like the nuclear envelope.[46] As a way of forming a nuclear membrane, endosymbiosis could be expected to use less energy than if the cell was to develop a metabolic process to fold the cell membrane for the purpose.[42] Digesting engulfed cells without energy-producing mitochondria would have been challenging for the host cell.[41] On this view, membrane-bound bubbles or vesicles leaving the protomitochondria may have formed the nuclear envelope.[41]

The process of symbiogenesis by which the early eukaryotic cell integrated the proto-mitochondrion likely included protection of the archaeal host genome from the release of reactive oxygen species. These would have been formed during oxidative phosphorylation and ATP production by the proto-mitochondrion. The nuclear membrane may have evolved as an adaptive innovation for protecting against nuclear genome DNA damage caused by reactive oxygen species.[47] Substantial transfer of genes from the ancestral proto-mitochondrial genome to the nuclear genome likely occurred during early eukaryotic evolution.[48] The greater protection of the nuclear genome against reactive oxygen species afforded by the nuclear membrane may explain the adaptive benefit of this gene transfer.

Endomembrane system edit

 
Diagram of endomembrane system in eukaryotic cell

Modern eukaryotic cells use the endomembrane system to transport products and wastes in, within, and out of cells. The membrane of nuclear envelope and endomembrane vesicles are composed of similar membrane proteins.[49] These vesicles also share similar membrane proteins with the organelle they originated from or are traveling towards.[50] This suggests that what formed the nuclear membrane also formed the endomembrane system. Prokaryotes do not have a complex internal membrane network like eukaryotes, but they could produce extracellular vesicles from their outer membrane.[41] After the early prokaryote was consumed by a proto-eukaryote, the prokaryote would have continued to produce vesicles that accumulated within the cell.[41] Interaction of internal components of vesicles may have led to the endoplasmic reticulum and the Golgi apparatus, both being parts of the endomembrane system.[41]

Cytoplasm edit

The syntrophy hypothesis, proposed by López-García and Moreira around the year 2000, suggested that eukaryotes arose by combining the metabolic capabilities of an archaean, a fermenting deltaproteobacterium, and a methanotrophic alphaproteobacterium which became the mitochondrion. In 2020, the same team updated their syntrophy proposal to cover an Asgard archaean that produced hydrogen with deltaproteobacterium that oxidised sulphur. A third organism, an alphaproteobacterium able to respire both aerobically and anaerobically, and to oxidise sulphur, developed into the mitochondrion; it may possibly also have been able to photosynthesise.[51]

Organellar genomes edit

Plastomes and mitogenomes edit

 
The human mitochondrial genome has retained genes encoding 2 rRNAs (blue), 22 tRNAs (white), and 13 redox proteins (yellow, orange, red).

Some endosymbiont genes remain in the organelles. Plastids and mitochondria retain genes encoding rRNAs, tRNAs, proteins involved in redox reactions, and proteins required for transcription, translation, and replication. There are many hypotheses to explain why organelles retain a small portion of their genome; however no one hypothesis will apply to all organisms, and the topic is still quite controversial. The hydrophobicity hypothesis states that highly hydrophobic (water hating) proteins (such as the membrane bound proteins involved in redox reactions) are not easily transported through the cytosol and therefore these proteins must be encoded in their respective organelles. The code disparity hypothesis states that the limit on transfer is due to differing genetic codes and RNA editing between the organelle and the nucleus. The redox control hypothesis states that genes encoding redox reaction proteins are retained in order to effectively couple the need for repair and the synthesis of these proteins. For example, if one of the photosystems is lost from the plastid, the intermediate electron carriers may lose or gain too many electrons, signalling the need for repair of a photosystem. The time delay involved in signalling the nucleus and transporting a cytosolic protein to the organelle results in the production of damaging reactive oxygen species. The final hypothesis states that the assembly of membrane proteins, particularly those involved in redox reactions, requires coordinated synthesis and assembly of subunits; however, translation and protein transport coordination is more difficult to control in the cytoplasm.[25][30][33][52]

Non-photosynthetic plastid genomes edit

The majority of the genes in the mitochondria and plastids are related to the expression (transcription, translation and replication) of genes encoding proteins involved in either photosynthesis (in plastids) or cellular respiration (in mitochondria). One might predict that the loss of photosynthesis or cellular respiration would allow for the complete loss of the plastid genome or the mitochondrial genome respectively.[25][30][33] While there are numerous examples of mitochondrial descendants (mitosomes and hydrogenosomes) that have lost their entire organellar genome,[50] non-photosynthetic plastids tend to retain a small genome. There are two main hypotheses to explain this occurrence:[33][53]

The essential tRNA hypothesis notes that there have been no documented functional plastid-to-nucleus gene transfers of genes encoding RNA products (tRNAs and rRNAs). As a result, plastids must make their own functional RNAs or import nuclear counterparts. The genes encoding tRNA-Glu and tRNA-fmet, however, appear to be indispensable. The plastid is responsible for haem biosynthesis, which requires plastid encoded tRNA-Glu (from the gene trnE) as a precursor molecule. Like other genes encoding RNAs, trnE cannot be transferred to the nucleus. In addition, it is unlikely trnE could be replaced by a cytosolic tRNA-Glu as trnE is highly conserved; single base changes in trnE have resulted in the loss of haem synthesis. The gene for tRNA-formylmethionine (tRNA-fmet) is also encoded in the plastid genome and is required for translation initiation in both plastids and mitochondria. A plastid is required to continue expressing the gene for tRNA-fmet so long as the mitochondrion is translating proteins.[33]

The limited window hypothesis offers a more general explanation for the retention of genes in non-photosynthetic plastids.[53] According to this hypothesis, genes are transferred to the nucleus following the disturbance of organelles.[34] Disturbance was common in the early stages of endosymbiosis, however, once the host cell gained control of organelle division, eukaryotes could evolve to have only one plastid per cell. Having only one plastid severely limits gene transfer[33] as the lysis of the single plastid would likely result in cell death.[33][53] Consistent with this hypothesis, organisms with multiple plastids show an 80-fold increase in plastid-to-nucleus gene transfer compared with organisms with single plastids.[53]

Evidence edit

There are many lines of evidence that mitochondria and plastids including chloroplasts arose from bacteria.[54][55][56][57][58]

  • New mitochondria and plastids are formed only through binary fission, the form of cell division used by bacteria and archaea.[59]
  • If a cell's mitochondria or chloroplasts are removed, the cell does not have the means to create new ones.[60] In some algae, such as Euglena, the plastids can be destroyed by certain chemicals or prolonged absence of light without otherwise affecting the cell: the plastids do not regenerate.
  • Transport proteins called porins are found in the outer membranes of mitochondria and chloroplasts and are also found in bacterial cell membranes.[61][62][63]
  • A membrane lipid cardiolipin is exclusively found in the inner mitochondrial membrane and bacterial cell membranes.[64]
  • Some mitochondria and some plastids contain single circular DNA molecules that are similar to the DNA of bacteria both in size and structure.[65]
  • Genome comparisons suggest a close relationship between mitochondria and Alphaproteobacteria.[66]
  • Genome comparisons suggest a close relationship between plastids and cyanobacteria.[67]
  • Many genes in the genomes of mitochondria and chloroplasts have been lost or transferred to the nucleus of the host cell. Consequently, the chromosomes of many eukaryotes contain genes that originated from the genomes of mitochondria and plastids.[65]
  • Mitochondria and plastids contain their own ribosomes; these are more similar to those of bacteria (70S) than those of eukaryotes.[68]
  • Proteins created by mitochondria and chloroplasts use N-formylmethionine as the initiating amino acid, as do proteins created by bacteria but not proteins created by eukaryotic nuclear genes or archaea.[69][70]
 
Comparison of chloroplasts and cyanobacteria showing their similarities. Both chloroplasts and cyanobacteria have a double membrane, DNA, ribosomes, and chlorophyll-containing thylakoids.

Secondary endosymbiosis edit

Primary endosymbiosis involves the engulfment of a cell by another free living organism. Secondary endosymbiosis occurs when the product of primary endosymbiosis is itself engulfed and retained by another free living eukaryote. Secondary endosymbiosis has occurred several times and has given rise to extremely diverse groups of algae and other eukaryotes. Some organisms can take opportunistic advantage of a similar process, where they engulf an alga and use the products of its photosynthesis, but once the prey item dies (or is lost) the host returns to a free living state. Obligate secondary endosymbionts become dependent on their organelles and are unable to survive in their absence. A secondary endosymbiosis event involving an ancestral red alga and a heterotrophic eukaryote resulted in the evolution and diversification of several other photosynthetic lineages including Cryptophyta, Haptophyta, Stramenopiles (or Heterokontophyta), and Alveolata.[71]

A possible secondary endosymbiosis has been observed in process in the heterotrophic protist Hatena. This organism behaves like a predator until it ingests a green alga, which loses its flagella and cytoskeleton but continues to live as a symbiont. Hatena meanwhile, now a host, switches to photosynthetic nutrition, gains the ability to move towards light, and loses its feeding apparatus.[72]

Despite the diversity of organisms containing plastids, the morphology, biochemistry, genomic organisation, and molecular phylogeny of plastid RNAs and proteins suggest a single origin of all extant plastids – although this theory is still debated.[73][74]

Some species including Pediculus humanus (lice) have multiple chromosomes in the mitochondrion. This and the phylogenetics of the genes encoded within the mitochondrion suggest that mitochondria have multiple ancestors, that these were acquired by endosymbiosis on several occasions rather than just once, and that there have been extensive mergers and rearrangements of genes on the several original mitochondrial chromosomes.[75]

Date edit

The question of when the transition from prokaryotic to eukaryotic form occurred and when the first crown group eukaryotes appeared on earth is still unresolved. The oldest known body fossils that can be positively assigned to the Eukaryota are acanthomorphic acritarchs from the 1.631 Gya Deonar Formation of India.[76] These fossils can still be identified as derived post-nuclear eukaryotes with a sophisticated, morphology-generating cytoskeleton sustained by mitochondria.[77] This fossil evidence indicates that endosymbiotic acquisition of alphaproteobacteria must have occurred before 1.6 Gya. Molecular clocks have also been used to estimate the last eukaryotic common ancestor, however these methods have large inherent uncertainty and give a wide range of dates. Reasonable results include the estimate of c. 1.8 Gya.[78] A 2.3 Gya estimate[79] also seems reasonable, and has the added attraction of coinciding with one of the most pronounced biogeochemical perturbations in Earth history, the early Palaeoproterozoic Great Oxygenation Event. The marked increase in atmospheric oxygen concentrations at that time has been suggested as a contributing cause of eukaryogenesis, inducing the evolution of oxygen-detoxifying mitochondria.[80] Alternatively, the Great Oxidation Event might be a consequence of eukaryogenesis, and its impact on the export and burial of organic carbon.[81]

See also edit

References edit

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  2. ^ . flax.nzdl.org. Archived from the original on 18 August 2021. Retrieved 8 March 2021.
  3. ^ a b Cornish-Bowden, Athel (7 December 2017). "Lynn Margulis and the origin of the eukaryotes". Journal of Theoretical Biology. The origin of mitosing cells: 50th anniversary of a classic paper by Lynn Sagan (Margulis). 434: 1. Bibcode:2017JThBi.434....1C. doi:10.1016/j.jtbi.2017.09.027. PMID 28992902.
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  5. ^ Mereschkowski, Konstantin (15 September 1905). "Über Natur und Ursprung der Chromatophoren im Pflanzenreiche" [On the nature and origin of chromatophores in the plant kingdom]. Biologisches Centralblatt (in German). 25 (18): 593–604.
  6. ^ See:
    • Mereschkowski, Konstantin (15 April 1910). "Theorie der zwei Plasmaarten als Grundlage der Symbiogenesis, einer neuen Lehre von der Entstehung der Organismen" [Theory of two types of plasms as the basis of symbiogenesis, a new study of the origin of organisms [part 1 of 4]]. Biologisches Centralblatt (in German). 30 (8): 278–288.
    • Mereschkowsky, Konstantin (1 May 1910). "Theorie der zwei Plasmaarten als Grundlage der Symbogenesis, einer neuen Lehre von der Entstehung der Organismen" [Theory of two types of plasms as the basis of symbiogenesis, a new study of the origin of organisms [part 2 of 4]]. Biologisches Centralblatt (in German). 30 (9): 289–303.
    • Mereschkowski, Konstantin (15 May 1910). "Theorie der zwei Plasmaarten als Grundlage der Symbiogenesis, einer neuen Lehre von der Entstehung der Organismen" [Theory of two types of plasms as the basis of symbiogenesis, a new study of the origin of organisms [part 3 of 4]]. Biologisches Centralblatt (in German). 30 (10): 321–347.
    • Mereschkowsky, Konstantin (1 June 1910). "Theorie der zwei Plasmaarten als Grundlage der Symbiogenesis, einer neuen Lehre von der Entstehung der Organismen" [Theory of two types of plasms as the basis of symbiogenesis, a new study of the origin of organisms [part 4 of 4]]. Biologisches Centralblatt (in German). 30 (11): 353–367.
  7. ^ Martin, William F.; Roettger, Mayo; Kloesges, Thorsten; et al. (PDF). Journal of Endocytobiosis and Cell Research. 23: 1–5. Archived from the original (PDF) on 2022-03-09. Retrieved 2015-07-20.(journal URL: [1] 2022-03-09 at the Wayback Machine)
  8. ^ See:
    • Schimper, A. F. W. (16 February 1883). "Ueber die Entwicklung der Chlorophyllkörner und Farbkörper" [On the development of chlorophyll granules and colored bodies [part 1 of 4]]. Botanische Zeitung (in German). 41 (7): 105–114. From p. 105: "Inzwischen theilte mir Herr Professor Schmitz mit, dass … die höheren Pflanzen sich ebenso verhalten würden." (Meanwhile, Prof. Schmitz reported to me that among algae, the creation of chlorophyll granules from the cell plasm doesn't occur, but that they arise exclusively from one another by division. The spores receive from the mother plant chlorophyll granules, which create, by division, all of the chlorophyll granules of the plants that arises from them [i.e., the spores]. This finding in algae made it seem likely to Prof. Schmitz that the higher plants would behave likewise.) From p. 106: "Meine Untersuchungen haben ergeben, … aus dem Scheitelmeristem sich entwickelnden Gewebe erzeugen." (My investigations have revealed that the vegetation points [i.e., points of vegetative growth] always contain differentiated chlorophyll bodies or their colorless rudiments; that they arise not by creation from the cell plasm, but from one another by division, and that they create all chlorophyll bodies and starch-forming [bodies] of the tissues developing from the apical meristem.) From p. 112, footnote 2: "Sollte es sich definitiv bestätigen, … an eine Symbiose erinnern." (If it should definitely be confirmed that the plastids in egg cells are not formed anew, then their relation to the organism containing them would somewhat suggest a symbiosis.)
    • Schimper, A. F. W. (23 February 1883). "Ueber die Entwicklung der Chlorophyllkörner und Farbkörper" [On the development of chlorophyll granules and colored bodies [part 2 of 4]]. Botanische Zeitung (in German). 41 (8): 121–131.
    • Schimper, A. F. W. (2 March 1883). "Ueber die Entwicklung der Chlorophyllkörner und Farbkörper" [On the development of chlorophyll granules and colored bodies [part 3 of 4]]. Botanische Zeitung (in German). 41 (9): 137–146.
    • Schimper, A. F. W. (9 March 1883). "Ueber die Entwicklung der Chlorophyllkörner und Farbkörper" [On the development of chlorophyll granules and colored bodies [part 4 of 4]]. Botanische Zeitung (in German). 41 (10): 153–162.
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    • Reviewed in: Niklas, Karl J. (2010). "Boris M. Kozo-Polyansky, Symbiogenesis: A New Principle of Evolution". Symbiosis. 52 (1): 49–50. Bibcode:2010Symbi..52...49N. doi:10.1007/s13199-010-0098-7. S2CID 41635248.
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Further reading edit

  • Alberts, Bruce (2002). Molecular Biology of the Cell. New York: Garland Science. ISBN 978-0-8153-3218-3. (General textbook)
  • Brinkman, Fiona S. L.; Blanchard, Jeffrey L.; Cherkasov, Artem; et al. (August 2002). "Evidence that plant-like genes in Chlamydia species reflect an ancestral relationship between Chlamydiaceae, cyanobacteria, and the chloroplast". Genome Research. 12 (8): 1159–67. doi:10.1101/gr.341802. PMC 186644. PMID 12176923.
  • Cohen, W. E.; Gardner, R. S. (1959). (PDF). Archived from the original (PDF) on 2011-07-15. Retrieved 2009-08-26. (Discusses theory of origin of eukaryotic cells by incorporating mitochondria and chloroplasts into anaerobic cells with emphasis on 'phage bacterial and putative viral mitochondrial/chloroplast interactions.)
  • Jarvis, P. (April 2001). "Intracellular signalling: the chloroplast talks!". Current Biology. 11 (8): R307-10. doi:10.1016/S0960-9822(01)00171-3. PMID 11369220. S2CID 11753648. (Recounts evidence that chloroplast-encoded proteins affect transcription of nuclear genes, as opposed to the more well-documented cases of nuclear-encoded proteins that affect mitochondria or chloroplasts.)
  • Blanchard, J. L.; Lynch, M. (July 2000). "Organellar genes: why do they end up in the nucleus?". Trends in Genetics. 16 (7): 315–20. doi:10.1016/S0168-9525(00)02053-9. PMID 10858662. (Discusses theories on how mitochondria and chloroplast genes are transferred into the nucleus, and also what steps a gene needs to go through in order to complete this process.)
  • Okamoto, N.; Inouye, I. (October 2005). "A secondary symbiosis in progress?". Science. 310 (5746): 287. doi:10.1126/science.1116125. PMID 16224014. S2CID 22081618.
  • Understanding Science Team. "Cells within cells: An extraordinary claim with extraordinary evidence" (PDF). University of California, Berkeley. Retrieved 16 February 2014.

External links edit

  • Tree of Life Eukaryotes

symbiogenesis, endosymbiotic, theory, serial, endosymbiotic, theory, leading, evolutionary, theory, origin, eukaryotic, cells, from, prokaryotic, organisms, theory, holds, that, mitochondria, plastids, such, chloroplasts, possibly, other, organelles, eukaryoti. Symbiogenesis endosymbiotic theory or serial endosymbiotic theory 2 is the leading evolutionary theory of the origin of eukaryotic cells from prokaryotic organisms 3 The theory holds that mitochondria plastids such as chloroplasts and possibly other organelles of eukaryotic cells are descended from formerly free living prokaryotes more closely related to the Bacteria than to the Archaea taken one inside the other in endosymbiosis Mitochondria appear to be phylogenetically related to Rickettsiales bacteria while chloroplasts are thought to be related to cyanobacteria In the theory of symbiogenesis a merger of an archaean and an aerobic bacterium created the eukaryotes with aerobic mitochondria a second merger added chloroplasts creating the green plants The original theory by Lynn Margulis proposed an additional preliminary merger but this is poorly supported and not now generally believed 1 The idea that chloroplasts were originally independent organisms that merged into a symbiotic relationship with other one celled organisms dates back to the 19th century when it was espoused by researchers such as Andreas Schimper The endosymbiotic theory was articulated in 1905 and 1910 by the Russian botanist Konstantin Mereschkowski and advanced and substantiated with microbiological evidence by Lynn Margulis in 1967 Among the many lines of evidence supporting symbiogenesis are that new mitochondria and plastids are formed only by splitting in two and that cells cannot create new ones otherwise that the transport proteins called porins are found in the outer membranes of mitochondria chloroplasts and bacterial cell membranes that cardiolipin is found only in the inner mitochondrial membrane and bacterial cell membranes and that some mitochondria and plastids contain single circular DNA molecules similar to the circular chromosomes of bacteria Contents 1 History 2 From endosymbionts to organelles 2 1 Free living ancestors 2 2 Gene transfer mechanisms 3 Endosymbiosis of protomitochondria 3 1 Mitochondria 3 2 Nuclear membrane 3 3 Endomembrane system 3 4 Cytoplasm 4 Organellar genomes 4 1 Plastomes and mitogenomes 4 2 Non photosynthetic plastid genomes 5 Evidence 6 Secondary endosymbiosis 7 Date 8 See also 9 References 10 Further reading 11 External linksHistory edit nbsp Konstantin Mereschkowski s 1905 tree of life diagram showing the origin of complex life forms by two episodes of symbiogenesis the incorporation of symbiotic bacteria to form successively nuclei and chloroplasts 4 The Russian botanist Konstantin Mereschkowski first outlined the theory of symbiogenesis from Greek syn syn together bios bios life and genesis genesis origin birth in his 1905 work The nature and origins of chromatophores in the plant kingdom and then elaborated it in his 1910 The Theory of Two Plasms as the Basis of Symbiogenesis a New Study of the Origins of Organisms 5 6 7 Mereschkowski proposed that complex life forms had originated by two episodes of symbiogenesis the incorporation of symbiotic bacteria to form successively nuclei and chloroplasts 4 Mereschkowski knew of the work of botanist Andreas Schimper In 1883 Schimper had observed that the division of chloroplasts in green plants closely resembled that of free living cyanobacteria Schimper had tentatively proposed in a footnote that green plants had arisen from a symbiotic union of two organisms 8 In 1918 the French scientist Paul Jules Portier published Les Symbiotes in which he claimed that the mitochondria originated from a symbiosis process 9 10 Ivan Wallin advocated the idea of an endosymbiotic origin of mitochondria in the 1920s 11 12 The Russian botanist Boris Kozo Polyansky became the first to explain the theory in terms of Darwinian evolution 13 In his 1924 book A New Principle of Biology Essay on the Theory of Symbiogenesis 14 he wrote The theory of symbiogenesis is a theory of selection relying on the phenomenon of symbiosis 15 These theories did not gain traction until more detailed electron microscopic comparisons between cyanobacteria and chloroplasts were made such as by Hans Ris in 1961 and 1962 16 17 These combined with the discovery that plastids and mitochondria contain their own DNA 18 led to a resurrection of the idea of symbiogenesis in the 1960s Lynn Margulis advanced and substantiated the theory with microbiological evidence in a 1967 paper On the origin of mitosing cells 19 In her 1981 work Symbiosis in Cell Evolution she argued that eukaryotic cells originated as communities of interacting entities including endosymbiotic spirochaetes that developed into eukaryotic flagella and cilia This last idea has not received much acceptance because flagella lack DNA and do not show ultrastructural similarities to bacteria or to archaea see also Evolution of flagella and Prokaryotic cytoskeleton According to Margulis and Dorion Sagan 20 Life did not take over the globe by combat but by networking i e by cooperation Christian de Duve proposed that the peroxisomes may have been the first endosymbionts allowing cells to withstand growing amounts of free molecular oxygen in the Earth s atmosphere However it now appears that peroxisomes may be formed de novo contradicting the idea that they have a symbiotic origin 21 The fundamental theory of symbiogenesis as the origin of mitochondria and chloroplasts is now widely accepted 3 From endosymbionts to organelles edit nbsp An autogenous model of the origin of eukaryotic cells Evidence now shows that a mitochondrion less eukaryote has never existed i e the nucleus was acquired at the same time as the mitochondria 22 Biologists usually distinguish organelles from endosymbionts whole organisms living inside other organisms by their reduced genome sizes 23 As an endosymbiont evolves into an organelle most of its genes are transferred to the host cell genome 24 The host cell and organelle therefore need to develop a transport mechanism that enables the return of the protein products needed by the organelle but now manufactured by the cell 25 Free living ancestors edit Alphaproteobacteria were formerly thought to be the free living organisms most closely related to mitochondria 25 Later research indicates that mitochondria are most closely related to Pelagibacterales bacteria in particular those in the SAR11 clade 26 27 Nitrogen fixing filamentous cyanobacteria are the free living organisms most closely related to plastids 25 28 29 Both cyanobacteria and alphaproteobacteria maintain a large gt 6 Mb genome encoding thousands of proteins 25 Plastids and mitochondria exhibit a dramatic reduction in genome size when compared with their bacterial relatives 25 Chloroplast genomes in photosynthetic organisms are normally 120 200 kb 30 encoding 20 200 proteins 25 and mitochondrial genomes in humans are approximately 16 kb and encode 37 genes 13 of which are proteins 31 Using the example of the freshwater amoeboid however Paulinella chromatophora which contains chromatophores found to be evolved from cyanobacteria Keeling and Archibald argue that this is not the only possible criterion another is that the host cell has assumed control of the regulation of the former endosymbiont s division thereby synchronizing it with the cell s own division 23 Nowack and her colleagues gene sequenced the chromatophore 1 02 Mb and found that only 867 proteins were encoded by these photosynthetic cells Comparisons with their closest free living cyanobacteria of the genus Synechococcus having a genome size 3 Mb with 3300 genes revealed that chromatophores had undergone a drastic genome shrinkage Chromatophores contained genes that were accountable for photosynthesis but were deficient in genes that could carry out other biosynthetic functions this observation suggests that these endosymbiotic cells are highly dependent on their hosts for their survival and growth mechanisms Thus these chromatophores were found to be non functional for organelle specific purposes when compared with mitochondria and plastids This distinction could have promoted the early evolution of photosynthetic organelles 32 The loss of genetic autonomy that is the loss of many genes from endosymbionts occurred very early in evolutionary time 33 Taking into account the entire original endosymbiont genome there are three main possible fates for genes over evolutionary time The first is the loss of functionally redundant genes 33 in which genes that are already represented in the nucleus are eventually lost The second is the transfer of genes to the nucleus while the third is that genes remain in the organelle that was once an organism 25 33 34 35 36 The loss of autonomy and integration of the endosymbiont with its host can be primarily attributed to nuclear gene transfer 36 As organelle genomes have been greatly reduced over evolutionary time nuclear genes have expanded and become more complex 25 As a result many plastid and mitochondrial processes are driven by nuclear encoded gene products 25 In addition many nuclear genes originating from endosymbionts have acquired novel functions unrelated to their organelles 25 36 Gene transfer mechanisms edit The mechanisms of gene transfer are not fully known however multiple hypotheses exist to explain this phenomenon The possible mechanisms include the Complementary DNA cDNA hypothesis and the bulk flow hypothesis 25 34 The cDNA hypothesis involves the use of messenger RNA mRNAs to transport genes from organelles to the nucleus where they are converted to cDNA and incorporated into the genome 25 34 The cDNA hypothesis is based on studies of the genomes of flowering plants Protein coding RNAs in mitochondria are spliced and edited using organelle specific splice and editing sites Nuclear copies of some mitochondrial genes however do not contain organelle specific splice sites suggesting a processed mRNA intermediate The cDNA hypothesis has since been revised as edited mitochondrial cDNAs are unlikely to recombine with the nuclear genome and are more likely to recombine with their native mitochondrial genome If the edited mitochondrial sequence recombines with the mitochondrial genome mitochondrial splice sites would no longer exist in the mitochondrial genome Any subsequent nuclear gene transfer would therefore also lack mitochondrial splice sites 25 The bulk flow hypothesis is the alternative to the cDNA hypothesis stating that escaped DNA rather than mRNA is the mechanism of gene transfer 25 34 According to this hypothesis disturbances to organelles including autophagy normal cell destruction gametogenesis the formation of gametes and cell stress release DNA which is imported into the nucleus and incorporated into the nuclear DNA using non homologous end joining repair of double stranded breaks 34 For example in the initial stages of endosymbiosis due to a lack of major gene transfer the host cell had little to no control over the endosymbiont The endosymbiont underwent cell division independently of the host cell resulting in many copies of the endosymbiont within the host cell Some of the endosymbionts lysed burst and high levels of DNA were incorporated into the nucleus A similar mechanism is thought to occur in tobacco plants which show a high rate of gene transfer and whose cells contain multiple chloroplasts 33 In addition the bulk flow hypothesis is also supported by the presence of non random clusters of organelle genes suggesting the simultaneous movement of multiple genes 34 Ford Doolittle proposed that whatever the mechanism gene transfer behaves like a ratchet resulting in unidirectional transfer of genes from the organelle to the nuclear genome 37 When genetic material from an organelle is incorporated into the nuclear genome either the organelle or nuclear copy of the gene may be lost from the population If the organelle copy is lost and this is fixed or lost through genetic drift a gene is successfully transferred to the nucleus If the nuclear copy is lost horizontal gene transfer can occur again and the cell can try again to have successful transfer of genes to the nucleus 37 In this ratchet like way genes from an organelle would be expected to accumulate in the nuclear genome over evolutionary time 37 Endosymbiosis of protomitochondria editFurther information Eukaryogenesis Endosymbiotic theory for the origin of mitochondria suggests that the proto eukaryote engulfed a protomitochondrion and this endosymbiont became an organelle a major step in eukaryogenesis the creation of the eukaryotes 38 Mitochondria edit nbsp Internal symbiont mitochondrion has a matrix and membranes like a free living alphaproteobacterial cell from which it may derive Mitochondria are organelles that synthesize the energy carrying molecule ATP for the cell by metabolizing carbon based macromolecules 39 The presence of DNA in mitochondria and proteins derived from mtDNA suggest that this organelle may have been a prokaryote prior to its integration into the proto eukaryote 40 Mitochondria are regarded as organelles rather than endosymbionts because mitochondria and the host cells share some parts of their genome undergo division simultaneously and provide each other with means to produce energy 40 The endomembrane system and nuclear membrane were hypothesized to have derived from the protomitochondria 41 42 43 Nuclear membrane edit The presence of a nucleus is one major difference between eukaryotes and prokaryotes 44 Some conserved nuclear proteins between eukaryotes and prokaryotes suggest that these two types had a common ancestor 45 Another theory behind nucleation is that early nuclear membrane proteins caused the cell membrane to fold and form a sphere with pores like the nuclear envelope 46 As a way of forming a nuclear membrane endosymbiosis could be expected to use less energy than if the cell was to develop a metabolic process to fold the cell membrane for the purpose 42 Digesting engulfed cells without energy producing mitochondria would have been challenging for the host cell 41 On this view membrane bound bubbles or vesicles leaving the protomitochondria may have formed the nuclear envelope 41 The process of symbiogenesis by which the early eukaryotic cell integrated the proto mitochondrion likely included protection of the archaeal host genome from the release of reactive oxygen species These would have been formed during oxidative phosphorylation and ATP production by the proto mitochondrion The nuclear membrane may have evolved as an adaptive innovation for protecting against nuclear genome DNA damage caused by reactive oxygen species 47 Substantial transfer of genes from the ancestral proto mitochondrial genome to the nuclear genome likely occurred during early eukaryotic evolution 48 The greater protection of the nuclear genome against reactive oxygen species afforded by the nuclear membrane may explain the adaptive benefit of this gene transfer Endomembrane system edit nbsp Diagram of endomembrane system in eukaryotic cellModern eukaryotic cells use the endomembrane system to transport products and wastes in within and out of cells The membrane of nuclear envelope and endomembrane vesicles are composed of similar membrane proteins 49 These vesicles also share similar membrane proteins with the organelle they originated from or are traveling towards 50 This suggests that what formed the nuclear membrane also formed the endomembrane system Prokaryotes do not have a complex internal membrane network like eukaryotes but they could produce extracellular vesicles from their outer membrane 41 After the early prokaryote was consumed by a proto eukaryote the prokaryote would have continued to produce vesicles that accumulated within the cell 41 Interaction of internal components of vesicles may have led to the endoplasmic reticulum and the Golgi apparatus both being parts of the endomembrane system 41 Cytoplasm edit The syntrophy hypothesis proposed by Lopez Garcia and Moreira around the year 2000 suggested that eukaryotes arose by combining the metabolic capabilities of an archaean a fermenting deltaproteobacterium and a methanotrophic alphaproteobacterium which became the mitochondrion In 2020 the same team updated their syntrophy proposal to cover an Asgard archaean that produced hydrogen with deltaproteobacterium that oxidised sulphur A third organism an alphaproteobacterium able to respire both aerobically and anaerobically and to oxidise sulphur developed into the mitochondrion it may possibly also have been able to photosynthesise 51 Organellar genomes editPlastomes and mitogenomes edit nbsp The human mitochondrial genome has retained genes encoding 2 rRNAs blue 22 tRNAs white and 13 redox proteins yellow orange red Some endosymbiont genes remain in the organelles Plastids and mitochondria retain genes encoding rRNAs tRNAs proteins involved in redox reactions and proteins required for transcription translation and replication There are many hypotheses to explain why organelles retain a small portion of their genome however no one hypothesis will apply to all organisms and the topic is still quite controversial The hydrophobicity hypothesis states that highly hydrophobic water hating proteins such as the membrane bound proteins involved in redox reactions are not easily transported through the cytosol and therefore these proteins must be encoded in their respective organelles The code disparity hypothesis states that the limit on transfer is due to differing genetic codes and RNA editing between the organelle and the nucleus The redox control hypothesis states that genes encoding redox reaction proteins are retained in order to effectively couple the need for repair and the synthesis of these proteins For example if one of the photosystems is lost from the plastid the intermediate electron carriers may lose or gain too many electrons signalling the need for repair of a photosystem The time delay involved in signalling the nucleus and transporting a cytosolic protein to the organelle results in the production of damaging reactive oxygen species The final hypothesis states that the assembly of membrane proteins particularly those involved in redox reactions requires coordinated synthesis and assembly of subunits however translation and protein transport coordination is more difficult to control in the cytoplasm 25 30 33 52 Non photosynthetic plastid genomes edit The majority of the genes in the mitochondria and plastids are related to the expression transcription translation and replication of genes encoding proteins involved in either photosynthesis in plastids or cellular respiration in mitochondria One might predict that the loss of photosynthesis or cellular respiration would allow for the complete loss of the plastid genome or the mitochondrial genome respectively 25 30 33 While there are numerous examples of mitochondrial descendants mitosomes and hydrogenosomes that have lost their entire organellar genome 50 non photosynthetic plastids tend to retain a small genome There are two main hypotheses to explain this occurrence 33 53 The essential tRNA hypothesis notes that there have been no documented functional plastid to nucleus gene transfers of genes encoding RNA products tRNAs and rRNAs As a result plastids must make their own functional RNAs or import nuclear counterparts The genes encoding tRNA Glu and tRNA fmet however appear to be indispensable The plastid is responsible for haem biosynthesis which requires plastid encoded tRNA Glu from the gene trnE as a precursor molecule Like other genes encoding RNAs trnE cannot be transferred to the nucleus In addition it is unlikely trnE could be replaced by a cytosolic tRNA Glu as trnE is highly conserved single base changes in trnE have resulted in the loss of haem synthesis The gene for tRNA formylmethionine tRNA fmet is also encoded in the plastid genome and is required for translation initiation in both plastids and mitochondria A plastid is required to continue expressing the gene for tRNA fmet so long as the mitochondrion is translating proteins 33 The limited window hypothesis offers a more general explanation for the retention of genes in non photosynthetic plastids 53 According to this hypothesis genes are transferred to the nucleus following the disturbance of organelles 34 Disturbance was common in the early stages of endosymbiosis however once the host cell gained control of organelle division eukaryotes could evolve to have only one plastid per cell Having only one plastid severely limits gene transfer 33 as the lysis of the single plastid would likely result in cell death 33 53 Consistent with this hypothesis organisms with multiple plastids show an 80 fold increase in plastid to nucleus gene transfer compared with organisms with single plastids 53 Evidence editThere are many lines of evidence that mitochondria and plastids including chloroplasts arose from bacteria 54 55 56 57 58 New mitochondria and plastids are formed only through binary fission the form of cell division used by bacteria and archaea 59 If a cell s mitochondria or chloroplasts are removed the cell does not have the means to create new ones 60 In some algae such as Euglena the plastids can be destroyed by certain chemicals or prolonged absence of light without otherwise affecting the cell the plastids do not regenerate Transport proteins called porins are found in the outer membranes of mitochondria and chloroplasts and are also found in bacterial cell membranes 61 62 63 A membrane lipid cardiolipin is exclusively found in the inner mitochondrial membrane and bacterial cell membranes 64 Some mitochondria and some plastids contain single circular DNA molecules that are similar to the DNA of bacteria both in size and structure 65 Genome comparisons suggest a close relationship between mitochondria and Alphaproteobacteria 66 Genome comparisons suggest a close relationship between plastids and cyanobacteria 67 Many genes in the genomes of mitochondria and chloroplasts have been lost or transferred to the nucleus of the host cell Consequently the chromosomes of many eukaryotes contain genes that originated from the genomes of mitochondria and plastids 65 Mitochondria and plastids contain their own ribosomes these are more similar to those of bacteria 70S than those of eukaryotes 68 Proteins created by mitochondria and chloroplasts use N formylmethionine as the initiating amino acid as do proteins created by bacteria but not proteins created by eukaryotic nuclear genes or archaea 69 70 nbsp Comparison of chloroplasts and cyanobacteria showing their similarities Both chloroplasts and cyanobacteria have a double membrane DNA ribosomes and chlorophyll containing thylakoids Secondary endosymbiosis editPrimary endosymbiosis involves the engulfment of a cell by another free living organism Secondary endosymbiosis occurs when the product of primary endosymbiosis is itself engulfed and retained by another free living eukaryote Secondary endosymbiosis has occurred several times and has given rise to extremely diverse groups of algae and other eukaryotes Some organisms can take opportunistic advantage of a similar process where they engulf an alga and use the products of its photosynthesis but once the prey item dies or is lost the host returns to a free living state Obligate secondary endosymbionts become dependent on their organelles and are unable to survive in their absence A secondary endosymbiosis event involving an ancestral red alga and a heterotrophic eukaryote resulted in the evolution and diversification of several other photosynthetic lineages including Cryptophyta Haptophyta Stramenopiles or Heterokontophyta and Alveolata 71 A possible secondary endosymbiosis has been observed in process in the heterotrophic protist Hatena This organism behaves like a predator until it ingests a green alga which loses its flagella and cytoskeleton but continues to live as a symbiont Hatena meanwhile now a host switches to photosynthetic nutrition gains the ability to move towards light and loses its feeding apparatus 72 Despite the diversity of organisms containing plastids the morphology biochemistry genomic organisation and molecular phylogeny of plastid RNAs and proteins suggest a single origin of all extant plastids although this theory is still debated 73 74 Some species including Pediculus humanus lice have multiple chromosomes in the mitochondrion This and the phylogenetics of the genes encoded within the mitochondrion suggest that mitochondria have multiple ancestors that these were acquired by endosymbiosis on several occasions rather than just once and that there have been extensive mergers and rearrangements of genes on the several original mitochondrial chromosomes 75 Date editThe question of when the transition from prokaryotic to eukaryotic form occurred and when the first crown group eukaryotes appeared on earth is still unresolved The oldest known body fossils that can be positively assigned to the Eukaryota are acanthomorphic acritarchs from the 1 631 Gya Deonar Formation of India 76 These fossils can still be identified as derived post nuclear eukaryotes with a sophisticated morphology generating cytoskeleton sustained by mitochondria 77 This fossil evidence indicates that endosymbiotic acquisition of alphaproteobacteria must have occurred before 1 6 Gya Molecular clocks have also been used to estimate the last eukaryotic common ancestor however these methods have large inherent uncertainty and give a wide range of dates Reasonable results include the estimate of c 1 8 Gya 78 A 2 3 Gya estimate 79 also seems reasonable and has the added attraction of coinciding with one of the most pronounced biogeochemical perturbations in Earth history the early Palaeoproterozoic Great Oxygenation Event The marked increase in atmospheric oxygen concentrations at that time has been suggested as a contributing cause of eukaryogenesis inducing the evolution of oxygen detoxifying mitochondria 80 Alternatively the Great Oxidation Event might be a consequence of eukaryogenesis and its impact on the export and burial of organic carbon 81 See also editAngomonas deanei a protozoan that harbours an obligate bacterial symbiont Hatena arenicola a species that appears to be in the process of acquiring an endosymbiont Hydrogen hypothesis the theory that mitochondria were acquired by hydrogen dependent archaea their endosymbionts being facultatively anaerobic bacteria Kleptoplasty the sequestering of plastids from ingested algae Mixotricha paradoxa which itself is a symbiont contains numerous endosymbiotic bacteria Parakaryon myojinensis a possible result of endosymbiosis independent of eukaryotes Parasite Eve fiction about endosymbiosis Strigomonas culicis another protozoan that harbours an obligate bacterial symbiont Viral eukaryogenesis hypothesis that the cell nucleus originated from endosymbiosisReferences edit Latorre A Durban A Moya A Pereto J 2011 The role of symbiosis in eukaryotic evolution In Gargaud M Lopez Garcia P Martin H eds Origins and Evolution of Life An astrobiological perspective Cambridge Cambridge University Press pp 326 339 ISBN 978 0 521 76131 4 Archived from the original on 24 March 2019 Retrieved 27 August 2017 Serial endosymbiotic theory SET flax nzdl org Archived from the original on 18 August 2021 Retrieved 8 March 2021 a b Cornish Bowden Athel 7 December 2017 Lynn Margulis and the origin of the eukaryotes Journal of Theoretical Biology The origin of mitosing cells 50th anniversary of a classic paper by Lynn Sagan Margulis 434 1 Bibcode 2017JThBi 434 1C doi 10 1016 j jtbi 2017 09 027 PMID 28992902 a b Mereschkowsky s Tree of Life Scientific American Retrieved 1 May 2017 Mereschkowski Konstantin 15 September 1905 Uber Natur und Ursprung der Chromatophoren im Pflanzenreiche On the nature and origin of chromatophores in the plant kingdom Biologisches Centralblatt in German 25 18 593 604 See Mereschkowski Konstantin 15 April 1910 Theorie der zwei Plasmaarten als Grundlage der Symbiogenesis einer neuen Lehre von der Entstehung der Organismen Theory of two types of plasms as the basis of symbiogenesis a new study of the origin of organisms part 1 of 4 Biologisches Centralblatt in German 30 8 278 288 Mereschkowsky Konstantin 1 May 1910 Theorie der zwei Plasmaarten als Grundlage der Symbogenesis einer neuen Lehre von der Entstehung der Organismen Theory of two types of plasms as the basis of symbiogenesis a new study of the origin of organisms part 2 of 4 Biologisches Centralblatt in German 30 9 289 303 Mereschkowski Konstantin 15 May 1910 Theorie der zwei Plasmaarten als Grundlage der Symbiogenesis einer neuen Lehre von der Entstehung der Organismen Theory of two types of plasms as the basis of symbiogenesis a new study of the origin of organisms part 3 of 4 Biologisches Centralblatt in German 30 10 321 347 Mereschkowsky Konstantin 1 June 1910 Theorie der zwei Plasmaarten als Grundlage der Symbiogenesis einer neuen Lehre von der Entstehung der Organismen Theory of two types of plasms as the basis of symbiogenesis a new study of the origin of organisms part 4 of 4 Biologisches Centralblatt in German 30 11 353 367 Martin William F Roettger Mayo Kloesges Thorsten et al Modern endosymbiotic theory Getting lateral gene transfer into the equation PDF Journal of Endocytobiosis and Cell Research 23 1 5 Archived from the original PDF on 2022 03 09 Retrieved 2015 07 20 journal URL 1 Archived 2022 03 09 at the Wayback Machine See Schimper A F W 16 February 1883 Ueber die Entwicklung der Chlorophyllkorner und Farbkorper On the development of chlorophyll granules and colored bodies part 1 of 4 Botanische Zeitung in German 41 7 105 114 From p 105 Inzwischen theilte mir Herr Professor Schmitz mit dass die hoheren Pflanzen sich ebenso verhalten wurden Meanwhile Prof Schmitz reported to me that among algae the creation of chlorophyll granules from the cell plasm doesn t occur but that they arise exclusively from one another by division The spores receive from the mother plant chlorophyll granules which create by division all of the chlorophyll granules of the plants that arises from them i e the spores This finding in algae made it seem likely to Prof Schmitz that the higher plants would behave likewise From p 106 Meine Untersuchungen haben ergeben aus dem Scheitelmeristem sich entwickelnden Gewebe erzeugen My investigations have revealed that the vegetation points i e points of vegetative growth always contain differentiated chlorophyll bodies or their colorless rudiments that they arise not by creation from the cell plasm but from one another by division and that they create all chlorophyll bodies and starch forming bodies of the tissues developing from the apical meristem From p 112 footnote 2 Sollte es sich definitiv bestatigen an eine Symbiose erinnern If it should definitely be confirmed that the plastids in egg cells are not formed anew then their relation to 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Early evolution of the Eukaryota Palaeontology 58 1 5 17 doi 10 1111 pala 12139 Parfrey Laura Wegener Lahr Daniel J G Knoll Andrew H Katz Laura A August 2011 Estimating the timing of early eukaryotic diversification with multigene molecular clocks Proceedings of the National Academy of Sciences of the United States of America 108 33 13624 9 Bibcode 2011PNAS 10813624P doi 10 1073 pnas 1110633108 PMC 3158185 PMID 21810989 Hedges S Blair Blair Jaime E Venturi Maria L Shoe Jason L January 2004 A molecular timescale of eukaryote evolution and the rise of complex multicellular life BMC Evolutionary Biology 4 2 doi 10 1186 1471 2148 4 2 PMC 341452 PMID 15005799 Gross Jeferson Bhattacharya Debashish August 2010 Uniting sex and eukaryote origins in an emerging oxygenic world Biology Direct 5 53 doi 10 1186 1745 6150 5 53 PMC 2933680 PMID 20731852 Butterfield Nicholas J 1997 Plankton ecology and the Proterozoic Phanerozoic transition Paleobiology 23 2 247 262 Bibcode 1997Pbio 23 247B doi 10 1017 S009483730001681X S2CID 140642074 Further reading editAlberts Bruce 2002 Molecular Biology of the Cell New York Garland Science ISBN 978 0 8153 3218 3 General textbook Brinkman Fiona S L Blanchard Jeffrey L Cherkasov Artem et al August 2002 Evidence that plant like genes in Chlamydia species reflect an ancestral relationship between Chlamydiaceae cyanobacteria and the chloroplast Genome Research 12 8 1159 67 doi 10 1101 gr 341802 PMC 186644 PMID 12176923 Cohen W E Gardner R S 1959 Viral Theory and Endosymbiosis PDF Archived from the original PDF on 2011 07 15 Retrieved 2009 08 26 Discusses theory of origin of eukaryotic cells by incorporating mitochondria and chloroplasts into anaerobic cells with emphasis on phage bacterial and putative viral mitochondrial chloroplast interactions Jarvis P April 2001 Intracellular signalling the chloroplast talks Current Biology 11 8 R307 10 doi 10 1016 S0960 9822 01 00171 3 PMID 11369220 S2CID 11753648 Recounts evidence that chloroplast encoded proteins affect transcription of nuclear genes as opposed to the more well documented cases of nuclear encoded proteins that affect mitochondria or chloroplasts Blanchard J L Lynch M July 2000 Organellar genes why do they end up in the nucleus Trends in Genetics 16 7 315 20 doi 10 1016 S0168 9525 00 02053 9 PMID 10858662 Discusses theories on how mitochondria and chloroplast genes are transferred into the nucleus and also what steps a gene needs to go through in order to complete this process Okamoto N Inouye I October 2005 A secondary symbiosis in progress Science 310 5746 287 doi 10 1126 science 1116125 PMID 16224014 S2CID 22081618 Understanding Science Team Cells within cells An extraordinary claim with extraordinary evidence PDF University of California Berkeley Retrieved 16 February 2014 External links editTree of Life Eukaryotes Retrieved from https en wikipedia org w index php title Symbiogenesis amp oldid 1195847753, wikipedia, wiki, book, books, library,

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