Wikipedia
List of sequenced protist genomes
This list of sequenced protist genomes contains all the protist species known to have publicly available complete genome sequences that have been assembled, annotated and published; draft genomes are not included, nor are organelle only sequences.
This list is incomplete; you can help by adding missing items. (February 2011) |
Alveolata edit
Alveolata are a group of protists which includes the Ciliophora, Apicomplexa and Dinoflagellata. Members of this group are of particular interest to science as the cause of serious human and livestock diseases.
| Organism | Type | Relevance | Genome size | Number of genes predicted | Organization | Year of completion | Assembly status | Links |
|---|---|---|---|---|---|---|---|---|
| Babesia bovis | Apicomplexan | Cattle pathogen | 8.2 Mb | 3,671 | 2007[1] | |||
| Breviolum minutim (Symbiodinium minutum; clade B1) | Dinoflagellate | Coral symbiont | 1.5 Gb | 47,014 | Okinawa Institute of Science and Technology | 2013[2] | Draft | OIST Marine Genomics[3] |
| Cladocopium goreaui (Symbiodinium goreaui; Clade C1) | Dinoflagellate | Coral symbiont | 1.19 Gb | 35,913 | Reef Future Genomics (ReFuGe) 2020/ University of Queensland | 2018[4] | Draft | ReFuGe 2020[5] |
| Cladocopium C92 strain Y103 (Symbiodinium sp. clade C; putative type C92) | Dinoflagellate | Foraminiferan symbiont | Unknown (assembly size 0.70 Gb) | 65,832 | Okinawa Institute of Science and Technology | 2018[6] | Draft | OIST Marine Genomics[3] |
| Cryptosporidium hominis Strain:TU502 | Apicomplexan | Human pathogen | 10.4 Mb | 3,994[7] | Virginia Commonwealth University | 2004[7] | ||
| Cryptosporidium parvum C- or genotype 2 isolate | Apicomplexan | Human pathogen | 16.5 Mb | 3,807[8] | UCSF and University of Minnesota | 2004[8] | ||
| Eimeria tenella Houghton strain | Apicomplexan | Intestinal parasite of domestic fowl | 55-60 Mb[9] | The Wellcome Trust Sanger Institute[10] | Available for download;[10] 2007 for Chr 1[11] | |||
| Fugacium kawagutii CS156=CCMP2468 (Symbiodinium kawagutii; clade F1) | Dinoflagellate | Coral symbiont? | 1.07 Gb | 26,609 | Reef Future Genomics (ReFuGe) 2020 / University of Queensland | 2018[4] | Draft | ReFuGe 2020[5] |
| Fugacium kawagutii CCMP2468 (Symbiodinium kawagutii; clade F1) | Dinoflagellate | Coral symbiont? | 1.18 Gb | 36,850 | University of Connecticut / Xiamen University | 2015[12] | Draft | S. kawagutii genome project[13] |
| Neospora caninum | Apicomplexan | Pathogen for cattle and dogs | 62 Mb[14] | The Wellcome Trust Sanger Institute[15] | Available for download[15] | |||
| Paramecium tetraurelia | Ciliate | Model organism | 72 Mb | 39,642[16] | Genoscope | 2006[16] | ||
| Polarella glacialis CCMP1383 | Dinoflagellate | Psychrophile, Antarctic | 3.02 Gb (diploid), 1.48 Gbp (haploid) | 58,232 | University of Queensland | 2020[17] | Draft | UQ eSpace[18] |
| Polarella glacialis CCMP2088 | Dinoflagellate | Psychrophile, Arctic | 2.65 Gb (diploid), 1.30 Gbp (haploid) | 51,713 | University of Queensland | 2020[17] | Draft | UQ eSpace[18] |
| Plasmodium berghei ANKA | Apicomplexan | Rabbit malaria | 18.5 Mb[19] | 4,900;[19] 11,654 (UniProt) | ||||
| Plasmodium chabaudi | Apicomplexan | Rodent malaria | 19.8 Mb[20] | 5,000[20] | ||||
| Plasmodium falciparum Clone:3D7 | Apicomplexan | Human pathogen (malaria) | 22.9 Mb | 5,268[21] | Malaria Genome Project Consortium | 2002[21] | ||
| Plasmodium knowlesi | Apicomplexan | Primate pathogen (malaria) | 23.5 Mb | 5,188[22] | 2008[22] | |||
| Plasmodium vivax | Apicomplexan | Human pathogen (malaria) | 26.8 Mb | 5,433[23] | 2008[23] | |||
| Plasmodium yoelii yoelii Strain:17XNL | Apicomplexan | Rodent pathogen (malaria) | 23.1 Mb | 5,878[24] | TIGR and NMRC | 2002[24] | ||
| Symbiodinium microadriaticum (clade A) | Dinoflagellate | Coral symbiont | 1.1 Gb | 49,109 | King Abdullah University of Science and Technology | 2016[25] | Draft | Reef Genomics[26] |
| Symbiodinium A3 strain Y106 (Symbiodinium sp. clade A3) | Dinoflagellate | symbiont | Unknown (assembly size 0.77 Gb) | 69,018 | Okinawa Institute of Science and Technology | 2018[6] | Draft | OIST Marine Genomics[3] |
| Tetrahymena thermophila | Ciliate | Model organism | 104 Mb | 27,000[27] | 2006[27] | |||
| Theileria annulata Ankara clone C9 | Apicomplexan | Cattle pathogen | 8.3 Mb | 3,792 | Sanger | 2005[28] | ||
| Theileria parva Strain:Muguga | Apicomplexan | Cattle pathogen (African east coast fever) | 8.3 Mb | 4,035[29] | TIGR and the International Livestock Research Institute | 2005[29] | ||
| Toxoplasma gondii GT1, ME49, VEG strains | Apicomplexan | Mammal pathogen | 63 Mb (RefSeq) | 8,100 (UniProt) - 9,000 (EuPathDB) | J. Craig Venter Inst., TIGR, UPenn. | 2008[30] |
Amoebozoa edit
Amoebozoa are a group of motile amoeboid protists, members of this group move or feed by means of temporary projections, called pseudopods. The best known member of this group is the slime mold, which has been studied for centuries; other members include the Archamoebae, Tubulinea and Flabellinia. Some Amoeboza cause disease.
| Organism | Type | Relevance | Genome size | Number of genes predicted | Organization | Year of completion |
|---|---|---|---|---|---|---|
| Dictyostelium discoideum Strain:AX4 | Slime mold | Model organism | 34 Mb | 12,500[31] | Consortium from University of Cologne, Baylor College of Medicine and the Sanger Centre | 2005[31] |
| Entamoeba histolytica HM1:IMSS | Parasitic protozoan | Human pathogen (amoebic dysentery) | 23.8 Mb | 9,938[32] | TIGR, Sanger Institute and the London School of Hygiene and Tropical Medicine | 2005[32] |
| Polysphondylium pallidum Strain:PN500 | Slime mold | Model organism | 12,939,[33] 12,350 (UniProt) | Leibniz Institute for Age Research | 2009[33] |
Chromista edit
The Chromista are a group of protists that contains the algal phyla Heterokontophyta (stramenopiles), Haptophyta and Cryptophyta. Members of this group are mostly studied for evolutionary interest.
| Organism | Type | Relevance | Genome size | Number of genes predicted | Organization | Year of completion |
|---|---|---|---|---|---|---|
| Albugo laibachii | Oomycete | Arabidopsis parasite, biotroph | 37 Mb[34] | 13,032[34] | 2011[34] | |
| Aureococcus anophagefferens Strain:CCMP1984 | Pelagophyte | DOE Joint Genome Institute | 2011[35] | |||
| Bigelowiella natans | Chlorarachniophyte | Model organism | nucleomorph: 0.331 Mb nuclear: 95 Mb | nucleomorph: 373[36] nuclear: >21,000[37] | nucleomorph: Hall Institute Australia, Univ. Melbourne, Univ. BC nuclear: Dalhousie University, Halifax, Nova Scotia, Canada | 2006,[36] 2012[37] |
| Chroomonas mesostigmatica CCMP1168 | Cryptophyta | 2012[38] | ||||
| Cryptomonas paramecium | Cryptophyta | 2010[39] | ||||
| Emiliania huxleyi CCMP1516 | Coccolithophore (phytoplankton) | 141.7 Mb[40] | 30,569[40] | Joint Genome Institute | 2013[40] | |
| Emiliania huxleyi RCC1217 | Coccolithophore (phytoplankton) | Available for download[41] | ||||
| Fragilariopsis cylindrus | Diatom | 61.1 Mb[42] | 21,066[42] | Joint Genome Institute | 2017[42] | |
| Guillardia theta | Cryptomonad | Model organism | 0.551 Mb (nucleomorph genome only) 87 Mb (nuclear genome) | nucleomorph: 465[43] 513, 598 (UniProt) nuclear: >21,000[37] | nucleomorph: Canadian Institute of Advanced Research, Philipps-University Marburg and the University of British Columbia nuclear: Dalhousie University, Halifax, Nova Scotia, Canada | 2001,[43] 2012[37] |
| Hemiselmis andersenii CCMP7644 | Cryptomonad | Model organism | 0.572 Mb (nucleomorph genome only) | 472,[44] 502 (UniProt) | Canadian Institute of Advanced Research | 2007[44] |
| Hyaloperonospora arabidopsidis | Oomycete | obligate biotroph, Arabidopsis pathogen | WUGSC | 2010[45] | ||
| Nannochloropis gaditana Strain: CCMP526 | Eustigmatophyte | Lipid-producing, biotechnology applications | Virginia Bioinformatics Institute | 2012[46] | ||
| Phaeodactylum tricornutum Strain: CCAP1055/1 | Diatom | 27.4 Mb | 10,402 | Joint Genome Institute | 2008[47] | |
| Phytophthora infestans Strain:T30-4 | Oomycete | Great Famine of Ireland pathogen | Broad Institute | 2009[48] | ||
| Phytophthora ramorum | Oomycete | Sudden oak death pathogen | 65 Mb (7x) | 15,743 | Joint Genome Institute et al. | 2006[49] |
| Phytophthora sojae | Oomycete | Soybean pathogen | 95 Mb (9x) | 19,027 | Joint Genome Institute et al. | 2006[49] |
| Pseudo-nitzschia multiseries | Diatom | Joint Genome Institute | ||||
| Plasmodiophora brassicae | Plasmodiophorid | Clubroot disease pathogen | 25.5 Mb | 9,730 | SLU Uppsala et al. | 2015[50] |
| Pythium ultimum | Oomycete | ubiquitous plant pathogen | 42.8 Mb | 15,290 | Michigan State University et al. | 2010[51] |
| Thalassiosira pseudonana Strain:CCMP 1335 | Diatom | 34.5 Mb | 11,242[52] | Joint Genome Institute and the University of Washington | 2004[52] |
Excavata edit
Excavata is a group of related free living and symbiotic protists; it includes the Metamonada, Loukozoa, Euglenozoa and Percolozoa. They are researched for their role in human disease.
| Organism | Type | Relevance | Genome size | Number of genes predicted | Organization | Year of completion |
|---|---|---|---|---|---|---|
| Giardia enterica (G. duodenalis assemblage B) | Parasitic protozoan | Human pathogen (Giardiasis) | 11.7 Mb | 4,470[53] | multicenter collaboration | 2009[53] |
| Giardia duodenalis ATCC 50803 (Giardia duodenalis assemblage A) | Parasitic protozoan | Human pathogen (Giardiasis) | 11.7 Mb | 6,470,[54] 7,153 (UniProt) | Karolinska Institutet, Marine Biological Laboratory | 2007[54] |
| Leishmania braziliensis MHOM/BR/75M2904 | Parasitic protozoan | Human pathogen (Leishmaniasis) | 33 Mb | 8,314[55] | Sanger Institute, Universidade de São Paulo, Imperial College | 2007[55] |
| Leishmania infantum JPCM5 | Parasitic protozoan | Human pathogen (Visceral leishmaniasis) | 33 Mb | 8,195[55] | Sanger Institute, Imperial College and University of Glasgow | 2007[55] |
| Leishmania major Strain:Friedlin | Parasitic protozoan | Human pathogen (Cutaneous leishmaniasis) | 32.8 Mb | 8,272[56] | Sanger Institute and Seattle Biomedical Research Institute | 2005[56] |
| Naegleria gruberi | amoeboflagellate | Diverged from other eukaryotes over 1 billion years ago | 41 Mb[57] | 15,727[57] | 2010[57] | |
| Trichomonas vaginalis | Parasitic protozoan | Human pathogen (Trichomoniasis) | 160 Mb | 59,681[58] | TIGR | 2007[58] |
| Trypanosoma brucei Strain:TREU927/4 GUTat10.1 | Parasitic protozoan | Human pathogen (Sleeping sickness) | 26 Mb | 9,068[59] | Sanger Institute and TIGR | 2005[59] |
| Trypanosoma cruzi Strain:CL Brener TC3 | Parasitic protozoan | Human pathogen (Chagas disease) | 34 Mb | 22,570[60] | TIGR, Seattle Biomedical Research Institute and Uppsala University | 2005[60] |
Opisthokonts, basal edit
Opisthokonts are a group of eukaryotes that include both animals and fungi as well as basal groups that are not classified in these groups. These basal opisthokonts are reasonably categorized as protists and include choanoflagellates, which are the sister or near-sister group of animals.
| Organism | Type | Relevance | Genome size | Number of genes predicted | Organization | Year of completion |
|---|---|---|---|---|---|---|
| Monosiga brevicollis | Choanoflagellate | close relative of metazoans | 41.6 Mb | 9,200[61] | Joint Genome Institute | 2007[61] |
See also edit
References edit
- ^ Brayton KA, Lau AO, Herndon DR, Hannick L, Kappmeyer LS, Berens SJ, et al. (October 2007). "Genome sequence of Babesia bovis and comparative analysis of apicomplexan hemoprotozoa". PLOS Pathogens. 3 (10): 1401–13. doi:10.1371/journal.ppat.0030148. PMC 2034396. PMID 17953480.
- ^ Shoguchi E, Shinzato C, Kawashima T, Gyoja F, Mungpakdee S, Koyanagi R, et al. (August 2013). "Draft assembly of the Symbiodinium minutum nuclear genome reveals dinoflagellate gene structure". Current Biology. 23 (15): 1399–408. doi:10.1016/j.cub.2013.05.062. PMID 23850284.
- ^ a b c "OIST Marine Genomics". marinegenomics.oist.jp. Retrieved 2018-08-22.
- ^ a b Liu H, Stephens TG, González-Pech RA, Beltran VH, Lapeyre B, Bongaerts P, et al. (2018). "Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis". Communications Biology. 1: 95. doi:10.1038/s42003-018-0098-3. PMC 6123633. PMID 30271976.
- ^ a b "ReFuGe 2020 Data Site". refuge2020.reefgenomics.org. Retrieved 2018-09-07.
- ^ a b Shoguchi E, Beedessee G, Tada I, Hisata K, Kawashima T, Takeuchi T, et al. (June 2018). "Two divergent Symbiodinium genomes reveal conservation of a gene cluster for sunscreen biosynthesis and recently lost genes". BMC Genomics. 19 (1): 458. doi:10.1186/s12864-018-4857-9. PMC 6001144. PMID 29898658.
- ^ a b Xu P, Widmer G, Wang Y, Ozaki LS, Alves JM, Serrano MG, et al. (October 2004). "The genome of Cryptosporidium hominis". Nature. 431 (7012): 1107–12. Bibcode:2004Natur.431.1107X. doi:10.1038/nature02977. PMID 15510150.
- ^ a b Abrahamsen MS, Templeton TJ, Enomoto S, Abrahante JE, Zhu G, Lancto CA, et al. (April 2004). "Complete genome sequence of the apicomplexan, Cryptosporidium parvum". Science. 304 (5669): 441–5. Bibcode:2004Sci...304..441A. doi:10.1126/science.1094786. PMID 15044751. S2CID 26434820.
- ^ genedb
- ^ a b Sanger
- ^ Ling KH, Rajandream MA, Rivailler P, Ivens A, Yap SJ, Madeira AM, et al. (March 2007). "Sequencing and analysis of chromosome 1 of Eimeria tenella reveals a unique segmental organization". Genome Research. 17 (3): 311–9. doi:10.1101/gr.5823007. PMC 1800922. PMID 17284678.
- ^ Lin S, Cheng S, Song B, Zhong X, Lin X, Li W, et al. (November 2015). "The Symbiodinium kawagutii genome illuminates dinoflagellate gene expression and coral symbiosis". Science. 350 (6261): 691–4. Bibcode:2015Sci...350..691L. doi:10.1126/science.aad0408. PMID 26542574.
- ^ "S. kawagutii data site". web.malab.cn/symka_new. Retrieved 2018-08-22.
- ^ genedb
- ^ a b Sanger
- ^ a b Aury JM, Jaillon O, Duret L, Noel B, Jubin C, Porcel BM, et al. (November 2006). "Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia". Nature. 444 (7116): 171–8. Bibcode:2006Natur.444..171A. doi:10.1038/nature05230. PMID 17086204.
- ^ a b Stephens TG, González-Pech RA, Cheng Y, Mohamed AR, Burt DW, Bhattacharya D, et al. (2020). "Genomes of the dinoflagellate Polarella glacialis encode tandemly repeated single-exon genes with adaptive functions". BMC Biology. 18 (1): 56. doi:10.1186/s12915-020-00782-8. PMC 7245778. PMID 32448240.
- ^ a b Stephens, Timothy; Ragan, Mark; Bhattacharya, Debashish; Chan, Cheong Xin (2020). "Polarella data site". doi:10.14264/uql.2020.222. S2CID 216542238.
{{cite journal}}: Cite journal requires|journal=(help) - ^ a b Ensembl entry
- ^ a b Ensembl entry
- ^ a b Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, et al. (October 2002). "Genome sequence of the human malaria parasite Plasmodium falciparum". Nature. 419 (6906): 498–511. Bibcode:2002Natur.419..498G. doi:10.1038/nature01097. PMC 3836256. PMID 12368864.
- ^ a b Pain A, Böhme U, Berry AE, Mungall K, Finn RD, Jackson AP, et al. (October 2008). "The genome of the simian and human malaria parasite Plasmodium knowlesi". Nature. 455 (7214): 799–803. Bibcode:2008Natur.455..799P. doi:10.1038/nature07306. PMC 2656934. PMID 18843368.
- ^ a b Carlton JM, Adams JH, Silva JC, Bidwell SL, Lorenzi H, Caler E, et al. (October 2008). "Comparative genomics of the neglected human malaria parasite Plasmodium vivax". Nature. 455 (7214): 757–63. Bibcode:2008Natur.455..757C. doi:10.1038/nature07327. PMC 2651158. PMID 18843361.
- ^ a b Carlton JM, Angiuoli SV, Suh BB, Kooij TW, Pertea M, Silva JC, et al. (October 2002). "Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii". Nature. 419 (6906): 512–9. Bibcode:2002Natur.419..512C. doi:10.1038/nature01099. PMID 12368865.
- ^ Aranda M, Li Y, Liew YJ, Baumgarten S, Simakov O, Wilson MC, et al. (December 2016). "Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle". Scientific Reports. 6: 39734. Bibcode:2016NatSR...639734A. doi:10.1038/srep39734. PMC 5177918. PMID 28004835.
- ^ "Reef Genomics Data Site". smic.reefgenomics.org. Retrieved 2018-08-22.
- ^ a b Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, et al. (September 2006). "Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote". PLOS Biology. 4 (9): e286. doi:10.1371/journal.pbio.0040286. PMC 1557398. PMID 16933976.
- ^ Pain A, Renauld H, Berriman M, Murphy L, Yeats CA, Weir W, et al. (July 2005). "Genome of the host-cell transforming parasite Theileria annulata compared with T. parva". Science. 309 (5731): 131–3. Bibcode:2005Sci...309..131P. doi:10.1126/science.1110418. PMID 15994557.
- ^ a b Gardner MJ, Bishop R, Shah T, de Villiers EP, Carlton JM, Hall N, et al. (July 2005). "Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytes". Science. 309 (5731): 134–7. Bibcode:2005Sci...309..134G. doi:10.1126/science.1110439. PMID 15994558.
- ^ NCBI Genome T. gondii ME49
- ^ a b Eichinger L, Pachebat JA, Glöckner G, Rajandream MA, Sucgang R, Berriman M, et al. (May 2005). "The genome of the social amoeba Dictyostelium discoideum". Nature. 435 (7038): 43–57. Bibcode:2005Natur.435...43E. doi:10.1038/nature03481. PMC 1352341. PMID 15875012.
- ^ a b Loftus B, Anderson I, Davies R, Alsmark UC, Samuelson J, Amedeo P, et al. (February 2005). "The genome of the protist parasite Entamoeba histolytica" (PDF). Nature. 433 (7028): 865–8. Bibcode:2005Natur.433..865L. doi:10.1038/nature03291. PMID 15729342. S2CID 14231289.
- ^ a b NCBI accession
- ^ a b c Kemen E, Gardiner A, Schultz-Larsen T, Kemen AC, Balmuth AL, Robert-Seilaniantz A, et al. (July 2011). Ausubel FM (ed.). "Gene gain and loss during evolution of obligate parasitism in the white rust pathogen of Arabidopsis thaliana". PLOS Biology. 9 (7): e1001094. doi:10.1371/journal.pbio.1001094. PMC 3130010. PMID 21750662.
- ^ Gobler CJ, Berry DL, Dyhrman ST, Wilhelm SW, Salamov A, Lobanov AV, et al. (March 2011). "Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics". Proceedings of the National Academy of Sciences of the United States of America. 108 (11): 4352–7. Bibcode:2011PNAS..108.4352G. doi:10.1073/pnas.1016106108. PMC 3060233. PMID 21368207.
- ^ a b Gilson PR, Su V, Slamovits CH, Reith ME, Keeling PJ, McFadden GI (June 2006). "Complete nucleotide sequence of the chlorarachniophyte nucleomorph: nature's smallest nucleus". Proceedings of the National Academy of Sciences of the United States of America. 103 (25): 9566–71. Bibcode:2006PNAS..103.9566G. doi:10.1073/pnas.0600707103. PMC 1480447. PMID 16760254.
- ^ a b c d Curtis BA, Tanifuji G, Burki F, Gruber A, Irimia M, Maruyama S, et al. (December 2012). "Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs". Nature. 492 (7427): 59–65. Bibcode:2012Natur.492...59C. doi:10.1038/nature11681. PMID 23201678.
- ^ Moore CE, Curtis B, Mills T, Tanifuji G, Archibald JM (2012). "Nucleomorph genome sequence of the cryptophyte alga Chroomonas mesostigmatica CCMP1168 reveals lineage-specific gene loss and genome complexity". Genome Biology and Evolution. 4 (11): 1162–75. doi:10.1093/gbe/evs090. PMC 3514955. PMID 23042551.
- ^ Tanifuji G, Onodera NT, Wheeler TJ, Dlutek M, Donaher N, Archibald JM (2012). "Complete nucleomorph genome sequence of the nonphotosynthetic alga Cryptomonas paramecium reveals a core nucleomorph gene set". Genome Biology and Evolution. 3: 44–54. doi:10.1093/gbe/evq082. PMC 3017389. PMID 21147880.
- ^ a b c Read BA, Kegel J, Klute MJ, Kuo A, Lefebvre SC, Maumus F, et al. (July 2013). "Pan genome of the phytoplankton Emiliania underpins its global distribution". Nature. 499 (7457): 209–13. Bibcode:2013Natur.499..209.. doi:10.1038/nature12221. hdl:1854/LU-4120924. PMID 23760476.
- ^ Entry
- ^ a b c Mock T, Otillar RP, Strauss J, McMullan M, Paajanen P, Schmutz J, et al. (January 2017). "Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus". Nature. 541 (7638): 536–540. Bibcode:2017Natur.541..536M. doi:10.1038/nature20803. hdl:10754/622831. PMID 28092920.
- ^ a b Douglas S, Zauner S, Fraunholz M, Beaton M, Penny S, Deng LT, et al. (April 2001). "The highly reduced genome of an enslaved algal nucleus". Nature. 410 (6832): 1091–6. Bibcode:2001Natur.410.1091D. doi:10.1038/35074092. PMID 11323671.
- ^ a b Lane CE, van den Heuvel K, Kozera C, Curtis BA, Parsons BJ, Bowman S, Archibald JM (December 2007). "Nucleomorph genome of Hemiselmis andersenii reveals complete intron loss and compaction as a driver of protein structure and function". Proceedings of the National Academy of Sciences of the United States of America. 104 (50): 19908–13. Bibcode:2007PNAS..10419908L. doi:10.1073/pnas.0707419104. PMC 2148396. PMID 18077423.
- ^ Baxter L, Tripathy S, Ishaque N, Boot N, Cabral A, Kemen E, et al. (December 2010). "Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genome". Science. 330 (6010): 1549–1551. Bibcode:2010Sci...330.1549B. doi:10.1126/science.1195203. PMC 3971456. PMID 21148394.
- ^ Radakovits R, Jinkerson RE, Fuerstenberg SI, Tae H, Settlage RE, Boore JL, Posewitz MC (February 2012). "Draft genome sequence and genetic transformation of the oleaginous alga Nannochloropis gaditana". Nature Communications. 3 (2): 686. Bibcode:2012NatCo...3..686R. doi:10.1038/ncomms1688. PMC 3293424. PMID 22353717.
- ^ Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, et al. (November 2008). "The Phaeodactylum genome reveals the evolutionary history of diatom genomes". Nature. 456 (7219): 239–44. Bibcode:2008Natur.456..239B. doi:10.1038/nature07410. PMID 18923393.
- ^ Haas BJ, Kamoun S, Zody MC, Jiang RH, Handsaker RE, Cano LM, et al. (September 2009). "Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans" (PDF). Nature. 461 (7262): 393–8. Bibcode:2009Natur.461..393H. doi:10.1038/nature08358. PMID 19741609. S2CID 4385549.
- ^ a b Tyler BM, Tripathy S, Zhang X, Dehal P, Jiang RH, Aerts A, et al. (September 2006). "Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis". Science. 313 (5791): 1261–6. Bibcode:2006Sci...313.1261T. doi:10.1126/science.1128796. PMID 16946064. S2CID 21287860.
- ^ Schwelm A, Fogelqvist J, Knaust A, Jülke S, Lilja T, Bonilla-Rosso G, et al. (June 2015). "The Plasmodiophora brassicae genome reveals insights in its life cycle and ancestry of chitin synthases". Scientific Reports. 5: 11153. Bibcode:2015NatSR...511153S. doi:10.1038/srep11153. PMC 4471660. PMID 26084520.
- ^ Carbone A, Siu A, Patel R (September 2010). "Pediatric atopic dermatitis: a review of the medical management". The Annals of Pharmacotherapy. 44 (9): 1448–58. doi:10.1345/aph.1P098. PMID 20628042. S2CID 44649671.
- ^ a b Armbrust EV, Berges JA, Bowler C, Green BR, Martinez D, Putnam NH, et al. (October 2004). "The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism". Science. 306 (5693): 79–86. Bibcode:2004Sci...306...79A. CiteSeerX 10.1.1.690.4884. doi:10.1126/science.1101156. PMID 15459382. S2CID 8593895.
- ^ a b Franzén O, Jerlström-Hultqvist J, Castro E, Sherwood E, Ankarklev J, Reiner DS, et al. (August 2009). Petri W (ed.). "Draft genome sequencing of giardia intestinalis assemblage B isolate GS: is human giardiasis caused by two different species?". PLOS Pathogens. 5 (8): e1000560. doi:10.1371/journal.ppat.1000560. PMC 2723961. PMID 19696920.
- ^ a b Morrison HG, McArthur AG, Gillin FD, Aley SB, Adam RD, Olsen GJ, et al. (September 2007). "Genomic minimalism in the early diverging intestinal parasite Giardia lamblia". Science. 317 (5846): 1921–6. Bibcode:2007Sci...317.1921M. doi:10.1126/science.1143837. PMID 17901334. S2CID 29299317.
- ^ a b c d Peacock CS, Seeger K, Harris D, Murphy L, Ruiz JC, Quail MA, et al. (July 2007). "Comparative genomic analysis of three Leishmania species that cause diverse human disease". Nature Genetics. 39 (7): 839–47. doi:10.1038/ng2053. PMC 2592530. PMID 17572675.
- ^ a b Ivens AC, Peacock CS, Worthey EA, Murphy L, Aggarwal G, Berriman M, et al. (July 2005). "The genome of the kinetoplastid parasite, Leishmania major". Science. 309 (5733): 436–42. Bibcode:2005Sci...309..436I. doi:10.1126/science.1112680. PMC 1470643. PMID 16020728.
- ^ a b c Fritz-Laylin LK, Prochnik SE, Ginger ML, Dacks JB, Carpenter ML, Field MC, et al. (March 2010). "The genome of Naegleria gruberi illuminates early eukaryotic versatility". Cell. 140 (5): 631–42. doi:10.1016/j.cell.2010.01.032. PMID 20211133. S2CID 13901186.
- ^ a b Carlton JM, Hirt RP, Silva JC, Delcher AL, Schatz M, Zhao Q, et al. (January 2007). "Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis". Science. 315 (5809): 207–12. Bibcode:2007Sci...315..207C. doi:10.1126/science.1132894. PMC 2080659. PMID 17218520.
- ^ a b Berriman M, Ghedin E, Hertz-Fowler C, Blandin G, Renauld H, Bartholomeu DC, et al. (July 2005). "The genome of the African trypanosome Trypanosoma brucei". Science. 309 (5733): 416–22. Bibcode:2005Sci...309..416B. doi:10.1126/science.1112642. PMID 16020726. S2CID 18649858.
- ^ a b El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran AN, et al. (July 2005). "The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease". Science. 309 (5733): 409–15. Bibcode:2005Sci...309..409E. doi:10.1126/science.1112631. hdl:11336/80500. PMID 16020725. S2CID 3830267.
- ^ a b King N, Westbrook MJ, Young SL, Kuo A, Abedin M, Chapman J, et al. (February 2008). "The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans". Nature. 451 (7180): 783–8. Bibcode:2008Natur.451..783K. doi:10.1038/nature06617. PMC 2562698. PMID 18273011.