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Herpes simplex virus

Herpes simplex virus 1 and 2 (HSV-1 and HSV-2), also known by their taxonomic names Human alphaherpesvirus 1 and Human alphaherpesvirus 2, are two members of the human Herpesviridae family, a set of viruses that produce viral infections in the majority of humans.[1][2] Both HSV-1 and HSV-2 are very common and contagious. They can be spread when an infected person begins shedding the virus.

As of 2016, about 67% of the world population under the age of 50 had HSV-1.[3] In the United States, about 47.8% and 11.9% are estimated to have HSV-1 and HSV-2, respectively, though actual prevalence may be much higher.[4] Because it can be transmitted through any intimate contact, it is one of the most common sexually transmitted infections.[5]

Symptoms edit

Many of those who are infected never develop symptoms.[6] Symptoms, when they occur, may include watery blisters in the skin or mucous membranes of the mouth, lips, nose, genitals,[1] or eyes (herpes simplex keratitis).[7] Lesions heal with a scab characteristic of herpetic disease. Sometimes, the viruses cause mild or atypical symptoms during outbreaks. However, they can also cause more troublesome forms of herpes simplex. As neurotropic and neuroinvasive viruses, HSV-1 and -2 persist in the body by hiding from the immune system in the cell bodies of neurons, particularly in sensory ganglia. After the initial or primary infection, some infected people experience sporadic episodes of viral reactivation or outbreaks. In an outbreak, the virus in a nerve cell becomes active and is transported via the neuron's axon to the skin, where virus replication and shedding occur and may cause new sores.[8]

Transmission edit

HSV-1 and HSV-2 are transmitted by contact with an infected person who has reactivations of the virus. HSV 1 and HSV-2 are periodically shed, most often asymptomatically. [citation needed]

In a study of people with first-episode genital HSV-1 infection from 2022, genital shedding of HSV-1 was detected on 12% of days at 2 months and declined significantly to 7% of days at 11 months. Most genital shedding was asymptomatic; genital and oral lesions and oral shedding were rare.[9]

Most sexual transmissions of HSV-2 occur during periods of asymptomatic shedding.[10] Asymptomatic reactivation means that the virus causes atypical, subtle, or hard-to-notice symptoms that are not identified as an active herpes infection, so acquiring the virus is possible even if no active HSV blisters or sores are present. In one study, daily genital swab samples detected HSV-2 at a median of 12–28% of days among those who had an outbreak, and 10% of days among those with asymptomatic infection (no prior outbreaks), with many of these episodes occurring without visible outbreak ("subclinical shedding").[11]

In another study, 73 subjects were randomized to receive valaciclovir 1 g daily or placebo for 60 days each in a two-way crossover design. A daily swab of the genital area was self-collected for HSV-2 detection by polymerase chain reaction, to compare the effect of valaciclovir versus placebo on asymptomatic viral shedding in immunocompetent, HSV-2 seropositive subjects without a history of symptomatic genital herpes infection. The study found that valaciclovir significantly reduced shedding during subclinical days compared to placebo, showing a 71% reduction; 84% of subjects had no shedding while receiving valaciclovir versus 54% of subjects on placebo. About 88% of patients treated with valaciclovir had no recognized signs or symptoms versus 77% for placebo.[12]

For HSV-2, subclinical shedding may account for most of the transmission.[11] Studies on discordant partners (one infected with HSV-2, one not) show that the transmission rate is approximately 5–8.9 per 10,000 sexual contacts, with condom usage greatly reducing the risk of acquisition.[13] Atypical symptoms are often attributed to other causes, such as a yeast infection.[14][15] HSV-1 is often acquired orally during childhood. It may also be sexually transmitted, including contact with saliva, such as kissing and oral sex.[16] Historically HSV-2 was primarily a sexually transmitted infection, but rates of HSV-1 genital infections have been increasing for the last few decades.[14]

Both viruses may also be transmitted vertically during childbirth.[17][18] However, the risk of transmission is minimal if the mother has no symptoms nor exposed blisters during delivery. The risk is considerable when the mother is infected with the virus for the first time during late pregnancy, reflecting high viral load.[19] While most viral STDs can not be transmitted through objects as the virus dies quickly outside of the body, HSV can survive for up to 4.5 hours on surfaces and can be transmitted through use of towels, toothbrushes, cups, cutlery, etc.[20][21][22][23]

Herpes simplex viruses can affect areas of skin exposed to contact with an infected person. An example of this is herpetic whitlow, which is a herpes infection on the fingers; it was commonly found on dental surgeon's hands prior to the routine use of gloves when treating patients. Shaking hands with an infected person does not transmit this disease.[24] Genital infection of HSV-2 increases the risk of acquiring HIV.[25]

Virology edit

HSV has been a model virus for many studies in molecular biology. For instance, one of the first functional promoters in eukaryotes was discovered in HSV (of the thymidine kinase gene) and the virion protein VP16 is one of the most-studied transcriptional activators.[26]

Viral structure edit

A three-dimensional reconstruction and animation of a tail-like assembly on HSV-1 capsid
 
3D reconstruction of the HSV-1 capsid
 
Herpes simplex virus 2 capsid

Animal herpes viruses all share some common properties. The structure of herpes viruses consists of a relatively large, double-stranded, linear DNA genome encased within an icosahedral protein cage called the capsid, which is wrapped in a lipid bilayer called the envelope. The envelope is joined to the capsid by means of a tegument. This complete particle is known as the virion.[27] HSV-1 and HSV-2 each contain at least 74 genes (or open reading frames, ORFs) within their genomes,[28] although speculation over gene crowding allows as many as 84 unique protein coding genes by 94 putative ORFs.[29] These genes encode a variety of proteins involved in forming the capsid, tegument and envelope of the virus, as well as controlling the replication and infectivity of the virus. These genes and their functions are summarized in the table below.[citation needed]

The genomes of HSV-1 and HSV-2 are complex and contain two unique regions called the long unique region (UL) and the short unique region (US). Of the 74 known ORFs, UL contains 56 viral genes, whereas US contains only 12.[28] Transcription of HSV genes is catalyzed by RNA polymerase II of the infected host.[28] Immediate early genes, which encode proteins for example ICP22[30] that regulate the expression of early and late viral genes, are the first to be expressed following infection. Early gene expression follows, to allow the synthesis of enzymes involved in DNA replication and the production of certain envelope glycoproteins. Expression of late genes occurs last; this group of genes predominantly encode proteins that form the virion particle.[28]

Five proteins from (UL) form the viral capsid - UL6, UL18, UL35, UL38, and the major capsid protein UL19.[27]

Cellular entry edit

 
A simplified diagram of HSV replication

Entry of HSV into a host cell involves several glycoproteins on the surface of the enveloped virus binding to their transmembrane receptors on the cell surface. Many of these receptors are then pulled inwards by the cell, which is thought to open a ring of three gHgL heterodimers stabilizing a compact conformation of the gB glycoprotein, so that it springs out and punctures the cell membrane.[31] The envelope covering the virus particle then fuses with the cell membrane, creating a pore through which the contents of the viral envelope enters the host cell.[citation needed]

The sequential stages of HSV entry are analogous to those of other viruses. At first, complementary receptors on the virus and the cell surface bring the viral and cell membranes into proximity. Interactions of these molecules then form a stable entry pore through which the viral envelope contents are introduced to the host cell. The virus can also be endocytosed after binding to the receptors, and the fusion could occur at the endosome. In electron micrographs, the outer leaflets of the viral and cellular lipid bilayers have been seen merged;[32] this hemifusion may be on the usual path to entry or it may usually be an arrested state more likely to be captured than a transient entry mechanism.[citation needed]

In the case of a herpes virus, initial interactions occur when two viral envelope glycoprotein called glycoprotein C (gC) and glycoprotein B (gB) bind to a cell surface polysaccharide called heparan sulfate. Next, the major receptor binding protein, glycoprotein D (gD), binds specifically to at least one of three known entry receptors.[33] These cell receptors include herpesvirus entry mediator (HVEM), nectin-1 and 3-O sulfated heparan sulfate. The nectin receptors usually produce cell-cell adhesion, to provide a strong point of attachment for the virus to the host cell.[31] These interactions bring the membrane surfaces into mutual proximity and allow for other glycoproteins embedded in the viral envelope to interact with other cell surface molecules. Once bound to the HVEM, gD changes its conformation and interacts with viral glycoproteins H (gH) and L (gL), which form a complex. The interaction of these membrane proteins may result in a hemifusion state. gB interaction with the gH/gL complex creates an entry pore for the viral capsid.[32] gB interacts with glycosaminoglycans on the surface of the host cell. [citation needed]

Genetic inoculation edit

After the viral capsid enters the cellular cytoplasm, it starts to express viral protein ICP27. ICP27 is a regulator protein that causes disruption in host protein synthesis and utilizes it for viral replication. ICP27 binds with a cellular enzyme Serine-Arginine Protein Kinase 1, SRPK1. Formation of this complex causes the SRPK1 shift from the cytoplasm to the nucleus, and the viral genome gets transported to the cell nucleus.[34] Once attached to the nucleus at a nuclear entry pore, the capsid ejects its DNA contents via the capsid portal. The capsid portal is formed by 12 copies of portal protein, UL6, arranged as a ring; the proteins contain a leucine zipper sequence of amino acids, which allow them to adhere to each other.[35] Each icosahedral capsid contains a single portal, located in one vertex.[36][37] The DNA exits the capsid in a single linear segment.[38]

Immune evasion edit

HSV evades the immune system through interference with MHC class I antigen presentation on the cell surface, by blocking the transporter associated with antigen processing (TAP) induced by the secretion of ICP-47 by HSV. In the host cell, TAP transports digested viral antigen epitope peptides from the cytosol to the endoplasmic reticulum, allowing these epitopes to be combined with MHC class I molecules and presented on the surface of the cell. Viral epitope presentation with MHC class I is a requirement for activation of cytotoxic T-lymphocytes (CTLs), the major effectors of the cell-mediated immune response against virally-infected cells. ICP-47 prevents initiation of a CTL-response against HSV, allowing the virus to survive for a protracted period in the host.[39] HSV usually produces cytopathic effect (CPE) within 24–72 hours post-infection in permissive cell lines which is observed by classical plaque formation. However, HSV-1 clinical isolates have also been reported that did not show any CPE in Vero and A549 cell cultures over several passages with low level of virus protein expression. Probably these HSV-1 isolates are evolving towards a more "cryptic" form to establish chronic infection thereby unravelling yet another strategy to evade the host immune system, besides neuronal latency.[40]

Replication edit

 
Micrograph showing the viral cytopathic effect of HSV (multinucleation, ground glass chromatin)

Following infection of a cell, a cascade of herpes virus proteins, called immediate-early, early, and late, is produced. Research using flow cytometry on another member of the herpes virus family, Kaposi's sarcoma-associated herpesvirus, indicates the possibility of an additional lytic stage, delayed-late.[41] These stages of lytic infection, particularly late lytic, are distinct from the latency stage. In the case of HSV-1, no protein products are detected during latency, whereas they are detected during the lytic cycle.[citation needed]

The early proteins transcribed are used in the regulation of genetic replication of the virus. On entering the cell, an α-TIF protein joins the viral particle and aids in immediate-early transcription. The virion host shutoff protein (VHS or UL41) is very important to viral replication.[42] This enzyme shuts off protein synthesis in the host, degrades host mRNA, helps in viral replication, and regulates gene expression of viral proteins. The viral genome immediately travels to the nucleus, but the VHS protein remains in the cytoplasm.[43][44]

The late proteins form the capsid and the receptors on the surface of the virus. Packaging of the viral particles — including the genome, core and the capsid - occurs in the nucleus of the cell. Here, concatemers of the viral genome are separated by cleavage and are placed into formed capsids. HSV-1 undergoes a process of primary and secondary envelopment. The primary envelope is acquired by budding into the inner nuclear membrane of the cell. This then fuses with the outer nuclear membrane. The virus acquires its final envelope by budding into cytoplasmic vesicles.[45]

Latent infection edit

HSVs may persist in a quiescent but persistent form known as latent infection, notably in neural ganglia.[1] The HSV genome circular DNA resides in the cell nucleus as an episome.[46] HSV-1 tends to reside in the trigeminal ganglia, while HSV-2 tends to reside in the sacral ganglia, but these are historical tendencies only. During latent infection of a cell, HSVs express latency-associated transcript (LAT) RNA. LAT regulates the host cell genome and interferes with natural cell death mechanisms. By maintaining the host cells, LAT expression preserves a reservoir of the virus, which allows subsequent, usually symptomatic, periodic recurrences or "outbreaks" characteristic of nonlatency. Whether or not recurrences are symptomatic, viral shedding occurs to infect a new host.[citation needed]

A protein found in neurons may bind to herpes virus DNA and regulate latency. Herpes virus DNA contains a gene for a protein called ICP4, which is an important transactivator of genes associated with lytic infection in HSV-1.[47] Elements surrounding the gene for ICP4 bind a protein known as the human neuronal protein neuronal restrictive silencing factor (NRSF) or human repressor element silencing transcription factor (REST). When bound to the viral DNA elements, histone deacetylation occurs atop the ICP4 gene sequence to prevent initiation of transcription from this gene, thereby preventing transcription of other viral genes involved in the lytic cycle.[47][48] Another HSV protein reverses the inhibition of ICP4 protein synthesis. ICP0 dissociates NRSF from the ICP4 gene and thus prevents silencing of the viral DNA.[49]

Genome edit

The HSV genome spans about 150,000 bp and consists of two unique segments, named unique long (UL) and unique short (US), as well as terminal inverted repeats found to the two ends of them named repeat long (RL) and repeat short (RS). There are also minor "terminal redundancy" (α) elements found on the further ends of RS. The overall arrangement is RL-UL-RL-α-RS-US-RS-α with each pair of repeats inverting each other. The whole sequence is then encapsuled in a terminal direct repeat. The long and short parts each have their own origins of replication, with OriL located between UL28 and UL30 and OriS located in a pair near the RS.[50] As the L and S segments can be assembled in any direction, they can be inverted relative to each other freely, forming various linear isomers.[51]

The open reading frames (ORFs) of HSV[28][52]
ORF Protein alias HSV-1 HSV-2 Function/description
Repeat long (RL)
ICP0/RL2 ICP0; IE110; α0 P08393 P28284 E3 ubiquitin ligase that activates viral gene transcription by opposing chromatinization of the viral genome and counteracts intrinsic- and interferon-based antiviral responses.[53]
RL1 RL1; ICP34.5 O12396 P28283 Neurovirulence factor. Antagonizes PKR by de-phosphorylating eIF4a. Binds to BECN1 and inactivates autophagy.
LAT LRP1, LRP2 P17588
P17589
Latency-associated transcript abd protein products (latency-related protein)
Unique long (UL)
UL1 Glycoprotein L P10185 P28278 Surface and membrane
UL2 Uracil-DNA glycosylase P10186 P13158 P28275 Uracil-DNA glycosylase
UL3 UL3 P10187 Q1XBW5 P0C012 P28279 unknown
UL4 UL4 P10188 P28280 unknown
UL5 HELI P10189 P28277 DNA helicase
UL6 Portal protein UL-6 P10190 Twelve of these proteins constitute the capsid portal ring through which DNA enters and exits the capsid.[35][36][37]
UL7 Cytoplasmic envelopment protein 1 P10191 P89430 Virion maturation
UL8 DNA helicase/primase complex-associated protein P10192 P89431 DNA virus helicase-primase complex-associated protein
UL9 Replication origin-binding protein P10193 P89432 Replication origin-binding protein
UL10 Glycoprotein M P04288 P89433 Surface and membrane
UL11 Cytoplasmic envelopment protein 3 P04289 Q68980 P13294 virion exit and secondary envelopment
UL12 Alkaline nuclease P04294 P06489 Alkaline exonuclease
UL13 UL13 P04290 P89436 Serine-threonine protein kinase
UL14 UL14 P04291 P89437 Tegument protein
UL15 TRM3 P04295 P89438 Processing and packaging of DNA
UL16 UL16 P10200 P89439 Tegument protein
UL17 CVC1 P10201 Processing and packaging DNA
UL18 TRX2 P10202 P89441 Capsid protein
UL19 VP5; ICP5 P06491 P89442 Major capsid protein
UL20 UL20 P10204 P89443 Membrane protein
UL21 UL21 P10205 P09855 P89444 Tegument protein[54]
UL22 Glycoprotein H P06477 P89445 Surface and membrane
UL23 Thymidine kinase O55259 Peripheral to DNA replication
UL24 UL24 P10208 unknown
UL25 UL25 P10209 Processing and packaging DNA
UL26 P40; VP24; VP22A; UL26.5 (HHV2 short isoform) P10210 P89449 Capsid protein
UL27 Glycoprotein B A1Z0P5 P08666 Surface and membrane
UL28 ICP18.5 P10212 Processing and packaging DNA
UL29 UL29; ICP8 Q2MGU6 Major DNA-binding protein
UL30 DNA polymerase Q4ACM2 DNA replication
UL31 UL31 Q25BX0 Nuclear matrix protein
UL32 UL32 P10216 Envelope glycoprotein
UL33 UL33 P10217 Processing and packaging DNA
UL34 UL34 P10218 Inner nuclear membrane protein
UL35 VP26 P10219 Capsid protein
UL36 UL36 P10220 Large tegument protein
UL37 UL37 P10216 Capsid assembly
UL38 UL38; VP19C P32888 Capsid assembly and DNA maturation
UL39 UL39; RR-1; ICP6 P08543 Ribonucleotide reductase (large subunit)
UL40 UL40; RR-2 P06474 Ribonucleotide reductase (small subunit)
UL41 UL41; VHS P10225 Tegument protein; virion host shutoff[42]
UL42 UL42 Q4H1G9 DNA polymerase processivity factor
UL43 UL43 P10227 Membrane protein
UL44 Glycoprotein C P10228 Q89730 Surface and membrane
UL45 UL45 P10229 Membrane protein; C-type lectin[55]
UL46 VP11/12 P08314 Tegument proteins
UL47 UL47; VP13/14 P10231 Tegument protein
UL48 VP16 (Alpha-TIF) P04486 P68336 Virion maturation; activate IE genes by interacting with the cellular transcription factors Oct-1 and HCF. Binds to the sequence 5'TAATGARAT3'.
UL49 UL49A O09800 Envelope protein
UL50 UL50 P10234 dUTP diphosphatase
UL51 UL51 P10234 Tegument protein
UL52 UL52 P10236 DNA helicase/primase complex protein
UL53 Glycoprotein K P68333 Surface and membrane
UL54 IE63; ICP27 P10238 Transcriptional regulation and inhibition of the STING signalsome[56]
UL55 UL55 P10239 Unknown
UL56 UL56 P10240 Unknown
Inverted repeat long (IRL)
Inverted repeat short (IRS)
Unique short (US)
US1 ICP22; IE68 P04485 Viral replication
US2 US2 P06485 Unknown
US3 US3 P04413 Serine/threonine-protein kinase
US4 Glycoprotein G P06484 P13290 Surface and membrane
US5 Glycoprotein J P06480 Surface and membrane
US6 Glycoprotein D A1Z0Q5 Q69467 Surface and membrane
US7 Glycoprotein I P06487 Surface and membrane
US8 Glycoprotein E Q703F0 P89475 Surface and membrane
US9 US9 P06481 Tegument protein
US10 US10 P06486 Capsid/Tegument protein
US11 US11; Vmw21 P56958 Binds DNA and RNA
US12 ICP47; IE12 P03170 Inhibits MHC class I pathway by preventing binding of antigen to TAP
Terminal repeat short (TRS)
RS1 ICP4; IE175 P08392 Major transcriptional activator. Essential for progression beyond the immediate-early phase of infection. IEG transcription repressor.

Gene expression edit

HSV genes are expressed in 3 temporal classes: immediate early (IE or α), early (E or ß) and late (γ) genes. However, the progression of viral gene expression is rather gradual than in clearly distinct stages. Immediate early genes are transcribed right after infection and their gene products activate transcription of the early genes. Early gene products help to replicate the viral DNA. Viral DNA replication, in turn, stimulates the expression of the late genes, encoding the structural proteins.[26]

Transcription of the immediate early (IE) genes begins right after virus DNA enters the nucleus. All virus genes are transcribed by host RNA polymerase II. Although host proteins are sufficient for virus transcription, viral proteins are necessary for the transcription of certain genes.[26] For instance, VP16 plays an important role in IE transcription and the virus particle apparently brings it into the host cell, so that it does not need to be produced first. Similarly, the IE proteins RS1 (ICP4), UL54 (ICP27), and ICP0 promote the transcription of the early (E) genes. Like IE genes, early gene promoters contain binding sites for cellular transcription factors. One early protein, ICP8, is necessary for both transcription of late genes and DNA replication.[26]

Later in the life cycle of HSV, expression of immediate early and early genes is shut down. This is mediated by specific virus proteins, e.g. ICP4, which represses itself by binding to elements in its own promoter. As a consequence, the down-regulation of ICP4 levels leads to a reduction of early and late gene expression, as ICP4 is important for both.[26]

Importantly, HSV shuts down host cell RNA, DNA and protein synthesis to direct cellular resources to virus production. First, the virus protein vhs induces the degradation of existing mRNAs early in infection. Other viral genes impede cellular transcription and translation. For instance, ICP27 inhibits RNA splicing, so that virus mRNAs (which are usually not spliced) gain an advantage over host mRNAs. Finally, virus proteins destabilize certain cellular proteins involved in the host cell cycle, so that both cell division and host cell DNA replication disturbed in favor of virus replication.[26]

Evolution edit

The herpes simplex 1 genomes can be classified into six clades.[57] Four of these occur in East Africa, one in East Asia and one in Europe and North America. This suggests that the virus may have originated in East Africa. The most recent common ancestor of the Eurasian strains appears to have evolved ~60,000 years ago.[58] The East Asian HSV-1 isolates have an unusual pattern that is currently best explained by the two waves of migration responsible for the peopling of Japan.[58]

Herpes simplex 2 genomes can be divided into two groups: one is globally distributed and the other is mostly limited to sub Saharan Africa.[59] The globally distributed genotype has undergone four ancient recombinations with herpes simplex 1. It has also been reported that HSV-1 and HSV-2 can have contemporary and stable recombination events in hosts simultaneously infected with both pathogens. All of the cases are HSV-2 acquiring parts of the HSV-1 genome, sometimes changing parts of its antigen epitope in the process.[60]

The mutation rate has been estimated to be ~1.38×10−7 substitutions/site/year.[57] In clinical setting, mutations in either the thymidine kinase gene or DNA polymerase gene have caused resistance to aciclovir. However, most of the mutations occur in the thymidine kinase gene rather than the DNA polymerase gene.[61]

Another analysis has estimated the mutation rate in the herpes simplex 1 genome to be 1.82×10−8 nucleotide substitution per site per year. This analysis placed the most recent common ancestor of this virus ~710,000 years ago.[62]

Herpes simplex 1 and 2 diverged about 6 million years ago.[60]

Treatment edit

Similar to other herpesviridae, the herpes simplex viruses establish latent lifelong infection, and thus cannot be eradicated from the body with current treatments.[63]

Treatment usually involves general-purpose antiviral drugs that interfere with viral replication, reduce the physical severity of outbreak-associated lesions, and lower the chance of transmission to others. Studies of vulnerable patient populations have indicated that daily use of antivirals such as aciclovir[64] and valaciclovir can reduce reactivation rates.[15] The extensive use of antiherpetic drugs has led to the development of some drug resistance,[citation needed] which in turn may lead to treatment failure. Therefore, new sources of drugs are broadly investigated to address the problem. In January 2020, a comprehensive review article was published that demonstrated the effectiveness of natural products as promising anti-HSV drugs.[65] Pyrithione, a zinc ionophore, has shown antiviral activity against herpes simplex.[66]

Alzheimer's disease edit

In 1979, it was reported that there is a possible link between HSV-1 and Alzheimer's disease, in people with the epsilon4 allele of the gene APOE.[67] HSV-1 appears to be particularly damaging to the nervous system and increases one's risk of developing Alzheimer's disease. The virus interacts with the components and receptors of lipoproteins, which may lead to the development of Alzheimer's disease.[68] This research identifies HSVs as the pathogen most clearly linked to the establishment of Alzheimer's.[69] According to a study done in 1997, without the presence of the gene allele, HSV-1 does not appear to cause any neurological damage or increase the risk of Alzheimer's.[70] However, a more recent prospective study published in 2008 with a cohort of 591 people showed a statistically significant difference between patients with antibodies indicating recent reactivation of HSV and those without these antibodies in the incidence of Alzheimer's disease, without direct correlation to the APOE-epsilon4 allele.[71]

The trial had a small sample of patients who did not have the antibody at baseline, so the results should be viewed as highly uncertain. In 2011, Manchester University scientists showed that treating HSV1-infected cells with antiviral agents decreased the accumulation of β-amyloid and tau protein and also decreased HSV-1 replication.[72]

A 2018 retrospective study from Taiwan on 33,000 patients found that being infected with herpes simplex virus increased the risk of dementia 2.56 times (95% CI: 2.3-2.8) in patients not receiving anti-herpetic medications (2.6 times for HSV-1 infections and 2.0 times for HSV-2 infections). However, HSV-infected patients who were receiving anti-herpetic medications (e.g., acyclovir, famciclovir, ganciclovir, idoxuridine, penciclovir, tromantadine, valaciclovir, or valganciclovir) showed no elevated risk of dementia compared to patients uninfected with HSV.[73]

Multiplicity reactivation edit

Multiplicity reactivation (MR) is the process by which viral genomes containing inactivating damage interact within an infected cell to form a viable viral genome. MR was originally discovered with the bacterial virus bacteriophage T4, but was subsequently also found with pathogenic viruses including influenza virus, HIV-1, adenovirus simian virus 40, vaccinia virus, reovirus, poliovirus and herpes simplex virus.[74]

When HSV particles are exposed to doses of a DNA damaging agent that would be lethal in single infections, but are then allowed to undergo multiple infection (i.e. two or more viruses per host cell), MR is observed. Enhanced survival of HSV-1 due to MR occurs upon exposure to different DNA damaging agents, including methyl methanesulfonate,[75] trimethylpsoralen (which causes inter-strand DNA cross-links),[76][77] and UV light.[78] After treatment of genetically marked HSV with trimethylpsoralen, recombination between the marked viruses increases, suggesting that trimethylpsoralen damage stimulates recombination.[76] MR of HSV appears to partially depend on the host cell recombinational repair machinery since skin fibroblast cells defective in a component of this machinery (i.e. cells from Bloom's syndrome patients) are deficient in MR.[78]

These observations suggest that MR in HSV infections involves genetic recombination between damaged viral genomes resulting in production of viable progeny viruses. HSV-1, upon infecting host cells, induces inflammation and oxidative stress.[79] Thus it appears that the HSV genome may be subjected to oxidative DNA damage during infection, and that MR may enhance viral survival and virulence under these conditions.[citation needed]

Use as an anti-cancer agent edit

Modified Herpes simplex virus is considered as a potential therapy for cancer and has been extensively clinically tested to assess its oncolytic (cancer killing) ability.[80] Interim overall survival data from Amgen's phase 3 trial of a genetically attenuated herpes virus suggests efficacy against melanoma.[81]

Use in neuronal connection tracing edit

Herpes simplex virus is also used as a transneuronal tracer defining connections among neurons by virtue of traversing synapses.[82]

Other related outcomes edit

HSV-2 the most common cause of Mollaret's meningitis.[83] HSV-1 can lead to potentially fatal cases of herpes simplex encephalitis.[84] Herpes simplex viruses have also been studied in the central nervous system disorders such as multiple sclerosis, but research has been conflicting and inconclusive.[85]

Following a diagnosis of genital herpes simplex infection, patients may develop an episode of profound depression. In addition to offering antiviral medication to alleviate symptoms and shorten their duration, physicians must also address the mental health impact of a new diagnosis. Providing information on the very high prevalence of these infections, their effective treatments, and future therapies in development may provide hope to patients who are otherwise demoralized.[citation needed]

Research edit

There exist commonly used vaccines to some herpesviruses, such as the veterinary vaccine HVT/LT (Turkey herpesvirus vector laryngotracheitis vaccine). However, it prevents atherosclerosis (which histologically mirrors atherosclerosis in humans) in target animals vaccinated.[86][87] The only human vaccines available for herpesviruses are for Varicella zoster virus, given to children around their first birthday to prevent chickenpox (varicella), or to adults to prevent an outbreak of shingles (herpes zoster). There is, however, no human vaccine for herpes simplex viruses. As of 2022, there are active pre-clinical and clinical studies underway on herpes simplex in humans; vaccines are being developed for both treatment and prevention.[citation needed]

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External links edit

  • "Genital Herpes". Public Health Agency of Canada. 2006-05-29.
  • Herpes simplex: Host viral protein interactions: A database of HSV-1 interacting host proteins 2010-08-12 at the Wayback Machine
  • 3D macromolecular structures of the Herpes simplex virus archived in the EM Data Bank(EMDB)

herpes, simplex, virus, this, article, about, virus, information, about, disease, caused, virus, herpes, simplex, genus, viruses, simplexvirus, also, known, their, taxonomic, names, human, alphaherpesvirus, human, alphaherpesvirus, members, human, herpesvirida. This article is about the virus For information about the disease caused by the virus see Herpes simplex For the genus of viruses see Simplexvirus Herpes simplex virus 1 and 2 HSV 1 and HSV 2 also known by their taxonomic names Human alphaherpesvirus 1 and Human alphaherpesvirus 2 are two members of the human Herpesviridae family a set of viruses that produce viral infections in the majority of humans 1 2 Both HSV 1 and HSV 2 are very common and contagious They can be spread when an infected person begins shedding the virus Herpes simplex viruses TEM micrograph of virions of a herpes simplex virus species Scientific classification unranked Virus Realm Duplodnaviria Kingdom Heunggongvirae Phylum Peploviricota Class Herviviricetes Order Herpesvirales Family Orthoherpesviridae Subfamily Alphaherpesvirinae Genus Simplexvirus Groups included Human alphaherpesvirus 1 Human alphaherpesvirus 2 Cladistically included but traditionally excluded taxa All other Simplexvirus spp Ateline alphaherpesvirus 1 Bovine alphaherpesvirus 2 Cercopithecine alphaherpesvirus 2 Leporid alphaherpesvirus 4 Macacine alphaherpesvirus 1 Macropodid alphaherpesvirus 1 Macropodid alphaherpesvirus 2 Panine alphaherpesvirus 3 Papiine alphaherpesvirus 2 Pteropodid alphaherpesvirus 1 Saimiriine alphaherpesrus 1 As of 2016 about 67 of the world population under the age of 50 had HSV 1 3 In the United States about 47 8 and 11 9 are estimated to have HSV 1 and HSV 2 respectively though actual prevalence may be much higher 4 Because it can be transmitted through any intimate contact it is one of the most common sexually transmitted infections 5 Contents 1 Symptoms 2 Transmission 3 Virology 3 1 Viral structure 3 2 Cellular entry 3 3 Genetic inoculation 3 4 Immune evasion 3 5 Replication 3 6 Latent infection 3 7 Genome 3 8 Gene expression 4 Evolution 5 Treatment 6 Alzheimer s disease 7 Multiplicity reactivation 8 Use as an anti cancer agent 9 Use in neuronal connection tracing 10 Other related outcomes 11 Research 12 References 13 External linksSymptoms editMany of those who are infected never develop symptoms 6 Symptoms when they occur may include watery blisters in the skin or mucous membranes of the mouth lips nose genitals 1 or eyes herpes simplex keratitis 7 Lesions heal with a scab characteristic of herpetic disease Sometimes the viruses cause mild or atypical symptoms during outbreaks However they can also cause more troublesome forms of herpes simplex As neurotropic and neuroinvasive viruses HSV 1 and 2 persist in the body by hiding from the immune system in the cell bodies of neurons particularly in sensory ganglia After the initial or primary infection some infected people experience sporadic episodes of viral reactivation or outbreaks In an outbreak the virus in a nerve cell becomes active and is transported via the neuron s axon to the skin where virus replication and shedding occur and may cause new sores 8 Transmission editMain article Herpes simplex HSV 1 and HSV 2 are transmitted by contact with an infected person who has reactivations of the virus HSV 1 and HSV 2 are periodically shed most often asymptomatically citation needed In a study of people with first episode genital HSV 1 infection from 2022 genital shedding of HSV 1 was detected on 12 of days at 2 months and declined significantly to 7 of days at 11 months Most genital shedding was asymptomatic genital and oral lesions and oral shedding were rare 9 Most sexual transmissions of HSV 2 occur during periods of asymptomatic shedding 10 Asymptomatic reactivation means that the virus causes atypical subtle or hard to notice symptoms that are not identified as an active herpes infection so acquiring the virus is possible even if no active HSV blisters or sores are present In one study daily genital swab samples detected HSV 2 at a median of 12 28 of days among those who had an outbreak and 10 of days among those with asymptomatic infection no prior outbreaks with many of these episodes occurring without visible outbreak subclinical shedding 11 In another study 73 subjects were randomized to receive valaciclovir 1 g daily or placebo for 60 days each in a two way crossover design A daily swab of the genital area was self collected for HSV 2 detection by polymerase chain reaction to compare the effect of valaciclovir versus placebo on asymptomatic viral shedding in immunocompetent HSV 2 seropositive subjects without a history of symptomatic genital herpes infection The study found that valaciclovir significantly reduced shedding during subclinical days compared to placebo showing a 71 reduction 84 of subjects had no shedding while receiving valaciclovir versus 54 of subjects on placebo About 88 of patients treated with valaciclovir had no recognized signs or symptoms versus 77 for placebo 12 For HSV 2 subclinical shedding may account for most of the transmission 11 Studies on discordant partners one infected with HSV 2 one not show that the transmission rate is approximately 5 8 9 per 10 000 sexual contacts with condom usage greatly reducing the risk of acquisition 13 Atypical symptoms are often attributed to other causes such as a yeast infection 14 15 HSV 1 is often acquired orally during childhood It may also be sexually transmitted including contact with saliva such as kissing and oral sex 16 Historically HSV 2 was primarily a sexually transmitted infection but rates of HSV 1 genital infections have been increasing for the last few decades 14 Both viruses may also be transmitted vertically during childbirth 17 18 However the risk of transmission is minimal if the mother has no symptoms nor exposed blisters during delivery The risk is considerable when the mother is infected with the virus for the first time during late pregnancy reflecting high viral load 19 While most viral STDs can not be transmitted through objects as the virus dies quickly outside of the body HSV can survive for up to 4 5 hours on surfaces and can be transmitted through use of towels toothbrushes cups cutlery etc 20 21 22 23 Herpes simplex viruses can affect areas of skin exposed to contact with an infected person An example of this is herpetic whitlow which is a herpes infection on the fingers it was commonly found on dental surgeon s hands prior to the routine use of gloves when treating patients Shaking hands with an infected person does not transmit this disease 24 Genital infection of HSV 2 increases the risk of acquiring HIV 25 Virology editHSV has been a model virus for many studies in molecular biology For instance one of the first functional promoters in eukaryotes was discovered in HSV of the thymidine kinase gene and the virion protein VP16 is one of the most studied transcriptional activators 26 Viral structure edit source source source source source A three dimensional reconstruction and animation of a tail like assembly on HSV 1 capsid nbsp 3D reconstruction of the HSV 1 capsid nbsp Herpes simplex virus 2 capsid Animal herpes viruses all share some common properties The structure of herpes viruses consists of a relatively large double stranded linear DNA genome encased within an icosahedral protein cage called the capsid which is wrapped in a lipid bilayer called the envelope The envelope is joined to the capsid by means of a tegument This complete particle is known as the virion 27 HSV 1 and HSV 2 each contain at least 74 genes or open reading frames ORFs within their genomes 28 although speculation over gene crowding allows as many as 84 unique protein coding genes by 94 putative ORFs 29 These genes encode a variety of proteins involved in forming the capsid tegument and envelope of the virus as well as controlling the replication and infectivity of the virus These genes and their functions are summarized in the table below citation needed The genomes of HSV 1 and HSV 2 are complex and contain two unique regions called the long unique region UL and the short unique region US Of the 74 known ORFs UL contains 56 viral genes whereas US contains only 12 28 Transcription of HSV genes is catalyzed by RNA polymerase II of the infected host 28 Immediate early genes which encode proteins for example ICP22 30 that regulate the expression of early and late viral genes are the first to be expressed following infection Early gene expression follows to allow the synthesis of enzymes involved in DNA replication and the production of certain envelope glycoproteins Expression of late genes occurs last this group of genes predominantly encode proteins that form the virion particle 28 Five proteins from UL form the viral capsid UL6 UL18 UL35 UL38 and the major capsid protein UL19 27 Cellular entry edit nbsp A simplified diagram of HSV replication Entry of HSV into a host cell involves several glycoproteins on the surface of the enveloped virus binding to their transmembrane receptors on the cell surface Many of these receptors are then pulled inwards by the cell which is thought to open a ring of three gHgL heterodimers stabilizing a compact conformation of the gB glycoprotein so that it springs out and punctures the cell membrane 31 The envelope covering the virus particle then fuses with the cell membrane creating a pore through which the contents of the viral envelope enters the host cell citation needed The sequential stages of HSV entry are analogous to those of other viruses At first complementary receptors on the virus and the cell surface bring the viral and cell membranes into proximity Interactions of these molecules then form a stable entry pore through which the viral envelope contents are introduced to the host cell The virus can also be endocytosed after binding to the receptors and the fusion could occur at the endosome In electron micrographs the outer leaflets of the viral and cellular lipid bilayers have been seen merged 32 this hemifusion may be on the usual path to entry or it may usually be an arrested state more likely to be captured than a transient entry mechanism citation needed In the case of a herpes virus initial interactions occur when two viral envelope glycoprotein called glycoprotein C gC and glycoprotein B gB bind to a cell surface polysaccharide called heparan sulfate Next the major receptor binding protein glycoprotein D gD binds specifically to at least one of three known entry receptors 33 These cell receptors include herpesvirus entry mediator HVEM nectin 1 and 3 O sulfated heparan sulfate The nectin receptors usually produce cell cell adhesion to provide a strong point of attachment for the virus to the host cell 31 These interactions bring the membrane surfaces into mutual proximity and allow for other glycoproteins embedded in the viral envelope to interact with other cell surface molecules Once bound to the HVEM gD changes its conformation and interacts with viral glycoproteins H gH and L gL which form a complex The interaction of these membrane proteins may result in a hemifusion state gB interaction with the gH gL complex creates an entry pore for the viral capsid 32 gB interacts with glycosaminoglycans on the surface of the host cell citation needed Genetic inoculation edit After the viral capsid enters the cellular cytoplasm it starts to express viral protein ICP27 ICP27 is a regulator protein that causes disruption in host protein synthesis and utilizes it for viral replication ICP27 binds with a cellular enzyme Serine Arginine Protein Kinase 1 SRPK1 Formation of this complex causes the SRPK1 shift from the cytoplasm to the nucleus and the viral genome gets transported to the cell nucleus 34 Once attached to the nucleus at a nuclear entry pore the capsid ejects its DNA contents via the capsid portal The capsid portal is formed by 12 copies of portal protein UL6 arranged as a ring the proteins contain a leucine zipper sequence of amino acids which allow them to adhere to each other 35 Each icosahedral capsid contains a single portal located in one vertex 36 37 The DNA exits the capsid in a single linear segment 38 Immune evasion edit HSV evades the immune system through interference with MHC class I antigen presentation on the cell surface by blocking the transporter associated with antigen processing TAP induced by the secretion of ICP 47 by HSV In the host cell TAP transports digested viral antigen epitope peptides from the cytosol to the endoplasmic reticulum allowing these epitopes to be combined with MHC class I molecules and presented on the surface of the cell Viral epitope presentation with MHC class I is a requirement for activation of cytotoxic T lymphocytes CTLs the major effectors of the cell mediated immune response against virally infected cells ICP 47 prevents initiation of a CTL response against HSV allowing the virus to survive for a protracted period in the host 39 HSV usually produces cytopathic effect CPE within 24 72 hours post infection in permissive cell lines which is observed by classical plaque formation However HSV 1 clinical isolates have also been reported that did not show any CPE in Vero and A549 cell cultures over several passages with low level of virus protein expression Probably these HSV 1 isolates are evolving towards a more cryptic form to establish chronic infection thereby unravelling yet another strategy to evade the host immune system besides neuronal latency 40 Replication edit nbsp Micrograph showing the viral cytopathic effect of HSV multinucleation ground glass chromatin Following infection of a cell a cascade of herpes virus proteins called immediate early early and late is produced Research using flow cytometry on another member of the herpes virus family Kaposi s sarcoma associated herpesvirus indicates the possibility of an additional lytic stage delayed late 41 These stages of lytic infection particularly late lytic are distinct from the latency stage In the case of HSV 1 no protein products are detected during latency whereas they are detected during the lytic cycle citation needed The early proteins transcribed are used in the regulation of genetic replication of the virus On entering the cell an a TIF protein joins the viral particle and aids in immediate early transcription The virion host shutoff protein VHS or UL41 is very important to viral replication 42 This enzyme shuts off protein synthesis in the host degrades host mRNA helps in viral replication and regulates gene expression of viral proteins The viral genome immediately travels to the nucleus but the VHS protein remains in the cytoplasm 43 44 The late proteins form the capsid and the receptors on the surface of the virus Packaging of the viral particles including the genome core and the capsid occurs in the nucleus of the cell Here concatemers of the viral genome are separated by cleavage and are placed into formed capsids HSV 1 undergoes a process of primary and secondary envelopment The primary envelope is acquired by budding into the inner nuclear membrane of the cell This then fuses with the outer nuclear membrane The virus acquires its final envelope by budding into cytoplasmic vesicles 45 Latent infection edit HSVs may persist in a quiescent but persistent form known as latent infection notably in neural ganglia 1 The HSV genome circular DNA resides in the cell nucleus as an episome 46 HSV 1 tends to reside in the trigeminal ganglia while HSV 2 tends to reside in the sacral ganglia but these are historical tendencies only During latent infection of a cell HSVs express latency associated transcript LAT RNA LAT regulates the host cell genome and interferes with natural cell death mechanisms By maintaining the host cells LAT expression preserves a reservoir of the virus which allows subsequent usually symptomatic periodic recurrences or outbreaks characteristic of nonlatency Whether or not recurrences are symptomatic viral shedding occurs to infect a new host citation needed A protein found in neurons may bind to herpes virus DNA and regulate latency Herpes virus DNA contains a gene for a protein called ICP4 which is an important transactivator of genes associated with lytic infection in HSV 1 47 Elements surrounding the gene for ICP4 bind a protein known as the human neuronal protein neuronal restrictive silencing factor NRSF or human repressor element silencing transcription factor REST When bound to the viral DNA elements histone deacetylation occurs atop the ICP4 gene sequence to prevent initiation of transcription from this gene thereby preventing transcription of other viral genes involved in the lytic cycle 47 48 Another HSV protein reverses the inhibition of ICP4 protein synthesis ICP0 dissociates NRSF from the ICP4 gene and thus prevents silencing of the viral DNA 49 Genome edit The HSV genome spans about 150 000 bp and consists of two unique segments named unique long UL and unique short US as well as terminal inverted repeats found to the two ends of them named repeat long RL and repeat short RS There are also minor terminal redundancy a elements found on the further ends of RS The overall arrangement is RL UL RL a RS US RS a with each pair of repeats inverting each other The whole sequence is then encapsuled in a terminal direct repeat The long and short parts each have their own origins of replication with OriL located between UL28 and UL30 and OriS located in a pair near the RS 50 As the L and S segments can be assembled in any direction they can be inverted relative to each other freely forming various linear isomers 51 The open reading frames ORFs of HSV 28 52 ORF Protein alias HSV 1 HSV 2 Function description Repeat long RL ICP0 RL2 ICP0 IE110 a0 P08393 P28284 E3 ubiquitin ligase that activates viral gene transcription by opposing chromatinization of the viral genome and counteracts intrinsic and interferon based antiviral responses 53 RL1 RL1 ICP34 5 O12396 P28283 Neurovirulence factor Antagonizes PKR by de phosphorylating eIF4a Binds to BECN1 and inactivates autophagy LAT LRP1 LRP2 P17588 P17589 Latency associated transcript abd protein products latency related protein Unique long UL UL1 Glycoprotein L P10185 P28278 Surface and membrane UL2 Uracil DNA glycosylase P10186 P13158 P28275 Uracil DNA glycosylase UL3 UL3 P10187 Q1XBW5 P0C012 P28279 unknown UL4 UL4 P10188 P28280 unknown UL5 HELI P10189 P28277 DNA helicase UL6 Portal protein UL 6 P10190 Twelve of these proteins constitute the capsid portal ring through which DNA enters and exits the capsid 35 36 37 UL7 Cytoplasmic envelopment protein 1 P10191 P89430 Virion maturation UL8 DNA helicase primase complex associated protein P10192 P89431 DNA virus helicase primase complex associated protein UL9 Replication origin binding protein P10193 P89432 Replication origin binding protein UL10 Glycoprotein M P04288 P89433 Surface and membrane UL11 Cytoplasmic envelopment protein 3 P04289 Q68980 P13294 virion exit and secondary envelopment UL12 Alkaline nuclease P04294 P06489 Alkaline exonuclease UL13 UL13 P04290 P89436 Serine threonine protein kinase UL14 UL14 P04291 P89437 Tegument protein UL15 TRM3 P04295 P89438 Processing and packaging of DNA UL16 UL16 P10200 P89439 Tegument protein UL17 CVC1 P10201 Processing and packaging DNA UL18 TRX2 P10202 P89441 Capsid protein UL19 VP5 ICP5 P06491 P89442 Major capsid protein UL20 UL20 P10204 P89443 Membrane protein UL21 UL21 P10205 P09855 P89444 Tegument protein 54 UL22 Glycoprotein H P06477 P89445 Surface and membrane UL23 Thymidine kinase O55259 Peripheral to DNA replication UL24 UL24 P10208 unknown UL25 UL25 P10209 Processing and packaging DNA UL26 P40 VP24 VP22A UL26 5 HHV2 short isoform P10210 P89449 Capsid protein UL27 Glycoprotein B A1Z0P5 P08666 Surface and membrane UL28 ICP18 5 P10212 Processing and packaging DNA UL29 UL29 ICP8 Q2MGU6 Major DNA binding protein UL30 DNA polymerase Q4ACM2 DNA replication UL31 UL31 Q25BX0 Nuclear matrix protein UL32 UL32 P10216 Envelope glycoprotein UL33 UL33 P10217 Processing and packaging DNA UL34 UL34 P10218 Inner nuclear membrane protein UL35 VP26 P10219 Capsid protein UL36 UL36 P10220 Large tegument protein UL37 UL37 P10216 Capsid assembly UL38 UL38 VP19C P32888 Capsid assembly and DNA maturation UL39 UL39 RR 1 ICP6 P08543 Ribonucleotide reductase large subunit UL40 UL40 RR 2 P06474 Ribonucleotide reductase small subunit UL41 UL41 VHS P10225 Tegument protein virion host shutoff 42 UL42 UL42 Q4H1G9 DNA polymerase processivity factor UL43 UL43 P10227 Membrane protein UL44 Glycoprotein C P10228 Q89730 Surface and membrane UL45 UL45 P10229 Membrane protein C type lectin 55 UL46 VP11 12 P08314 Tegument proteins UL47 UL47 VP13 14 P10231 Tegument protein UL48 VP16 Alpha TIF P04486 P68336 Virion maturation activate IE genes by interacting with the cellular transcription factors Oct 1 and HCF Binds to the sequence 5 TAATGARAT3 UL49 UL49A O09800 Envelope protein UL50 UL50 P10234 dUTP diphosphatase UL51 UL51 P10234 Tegument protein UL52 UL52 P10236 DNA helicase primase complex protein UL53 Glycoprotein K P68333 Surface and membrane UL54 IE63 ICP27 P10238 Transcriptional regulation and inhibition of the STING signalsome 56 UL55 UL55 P10239 Unknown UL56 UL56 P10240 Unknown Inverted repeat long IRL Inverted repeat short IRS Unique short US US1 ICP22 IE68 P04485 Viral replication US2 US2 P06485 Unknown US3 US3 P04413 Serine threonine protein kinase US4 Glycoprotein G P06484 P13290 Surface and membrane US5 Glycoprotein J P06480 Surface and membrane US6 Glycoprotein D A1Z0Q5 Q69467 Surface and membrane US7 Glycoprotein I P06487 Surface and membrane US8 Glycoprotein E Q703F0 P89475 Surface and membrane US9 US9 P06481 Tegument protein US10 US10 P06486 Capsid Tegument protein US11 US11 Vmw21 P56958 Binds DNA and RNA US12 ICP47 IE12 P03170 Inhibits MHC class I pathway by preventing binding of antigen to TAP Terminal repeat short TRS RS1 ICP4 IE175 P08392 Major transcriptional activator Essential for progression beyond the immediate early phase of infection IEG transcription repressor Gene expression edit HSV genes are expressed in 3 temporal classes immediate early IE or a early E or ss and late g genes However the progression of viral gene expression is rather gradual than in clearly distinct stages Immediate early genes are transcribed right after infection and their gene products activate transcription of the early genes Early gene products help to replicate the viral DNA Viral DNA replication in turn stimulates the expression of the late genes encoding the structural proteins 26 Transcription of the immediate early IE genes begins right after virus DNA enters the nucleus All virus genes are transcribed by host RNA polymerase II Although host proteins are sufficient for virus transcription viral proteins are necessary for the transcription of certain genes 26 For instance VP16 plays an important role in IE transcription and the virus particle apparently brings it into the host cell so that it does not need to be produced first Similarly the IE proteins RS1 ICP4 UL54 ICP27 and ICP0 promote the transcription of the early E genes Like IE genes early gene promoters contain binding sites for cellular transcription factors One early protein ICP8 is necessary for both transcription of late genes and DNA replication 26 Later in the life cycle of HSV expression of immediate early and early genes is shut down This is mediated by specific virus proteins e g ICP4 which represses itself by binding to elements in its own promoter As a consequence the down regulation of ICP4 levels leads to a reduction of early and late gene expression as ICP4 is important for both 26 Importantly HSV shuts down host cell RNA DNA and protein synthesis to direct cellular resources to virus production First the virus protein vhs induces the degradation of existing mRNAs early in infection Other viral genes impede cellular transcription and translation For instance ICP27 inhibits RNA splicing so that virus mRNAs which are usually not spliced gain an advantage over host mRNAs Finally virus proteins destabilize certain cellular proteins involved in the host cell cycle so that both cell division and host cell DNA replication disturbed in favor of virus replication 26 Evolution editThe herpes simplex 1 genomes can be classified into six clades 57 Four of these occur in East Africa one in East Asia and one in Europe and North America This suggests that the virus may have originated in East Africa The most recent common ancestor of the Eurasian strains appears to have evolved 60 000 years ago 58 The East Asian HSV 1 isolates have an unusual pattern that is currently best explained by the two waves of migration responsible for the peopling of Japan 58 Herpes simplex 2 genomes can be divided into two groups one is globally distributed and the other is mostly limited to sub Saharan Africa 59 The globally distributed genotype has undergone four ancient recombinations with herpes simplex 1 It has also been reported that HSV 1 and HSV 2 can have contemporary and stable recombination events in hosts simultaneously infected with both pathogens All of the cases are HSV 2 acquiring parts of the HSV 1 genome sometimes changing parts of its antigen epitope in the process 60 The mutation rate has been estimated to be 1 38 10 7 substitutions site year 57 In clinical setting mutations in either the thymidine kinase gene or DNA polymerase gene have caused resistance to aciclovir However most of the mutations occur in the thymidine kinase gene rather than the DNA polymerase gene 61 Another analysis has estimated the mutation rate in the herpes simplex 1 genome to be 1 82 10 8 nucleotide substitution per site per year This analysis placed the most recent common ancestor of this virus 710 000 years ago 62 Herpes simplex 1 and 2 diverged about 6 million years ago 60 Treatment editFurther information Herpes simplex Management Similar to other herpesviridae the herpes simplex viruses establish latent lifelong infection and thus cannot be eradicated from the body with current treatments 63 Treatment usually involves general purpose antiviral drugs that interfere with viral replication reduce the physical severity of outbreak associated lesions and lower the chance of transmission to others Studies of vulnerable patient populations have indicated that daily use of antivirals such as aciclovir 64 and valaciclovir can reduce reactivation rates 15 The extensive use of antiherpetic drugs has led to the development of some drug resistance citation needed which in turn may lead to treatment failure Therefore new sources of drugs are broadly investigated to address the problem In January 2020 a comprehensive review article was published that demonstrated the effectiveness of natural products as promising anti HSV drugs 65 Pyrithione a zinc ionophore has shown antiviral activity against herpes simplex 66 Alzheimer s disease editIn 1979 it was reported that there is a possible link between HSV 1 and Alzheimer s disease in people with the epsilon4 allele of the gene APOE 67 HSV 1 appears to be particularly damaging to the nervous system and increases one s risk of developing Alzheimer s disease The virus interacts with the components and receptors of lipoproteins which may lead to the development of Alzheimer s disease 68 This research identifies HSVs as the pathogen most clearly linked to the establishment of Alzheimer s 69 According to a study done in 1997 without the presence of the gene allele HSV 1 does not appear to cause any neurological damage or increase the risk of Alzheimer s 70 However a more recent prospective study published in 2008 with a cohort of 591 people showed a statistically significant difference between patients with antibodies indicating recent reactivation of HSV and those without these antibodies in the incidence of Alzheimer s disease without direct correlation to the APOE epsilon4 allele 71 The trial had a small sample of patients who did not have the antibody at baseline so the results should be viewed as highly uncertain In 2011 Manchester University scientists showed that treating HSV1 infected cells with antiviral agents decreased the accumulation of b amyloid and tau protein and also decreased HSV 1 replication 72 A 2018 retrospective study from Taiwan on 33 000 patients found that being infected with herpes simplex virus increased the risk of dementia 2 56 times 95 CI 2 3 2 8 in patients not receiving anti herpetic medications 2 6 times for HSV 1 infections and 2 0 times for HSV 2 infections However HSV infected patients who were receiving anti herpetic medications e g acyclovir famciclovir ganciclovir idoxuridine penciclovir tromantadine valaciclovir or valganciclovir showed no elevated risk of dementia compared to patients uninfected with HSV 73 Multiplicity reactivation editMultiplicity reactivation MR is the process by which viral genomes containing inactivating damage interact within an infected cell to form a viable viral genome MR was originally discovered with the bacterial virus bacteriophage T4 but was subsequently also found with pathogenic viruses including influenza virus HIV 1 adenovirus simian virus 40 vaccinia virus reovirus poliovirus and herpes simplex virus 74 When HSV particles are exposed to doses of a DNA damaging agent that would be lethal in single infections but are then allowed to undergo multiple infection i e two or more viruses per host cell MR is observed Enhanced survival of HSV 1 due to MR occurs upon exposure to different DNA damaging agents including methyl methanesulfonate 75 trimethylpsoralen which causes inter strand DNA cross links 76 77 and UV light 78 After treatment of genetically marked HSV with trimethylpsoralen recombination between the marked viruses increases suggesting that trimethylpsoralen damage stimulates recombination 76 MR of HSV appears to partially depend on the host cell recombinational repair machinery since skin fibroblast cells defective in a component of this machinery i e cells from Bloom s syndrome patients are deficient in MR 78 These observations suggest that MR in HSV infections involves genetic recombination between damaged viral genomes resulting in production of viable progeny viruses HSV 1 upon infecting host cells induces inflammation and oxidative stress 79 Thus it appears that the HSV genome may be subjected to oxidative DNA damage during infection and that MR may enhance viral survival and virulence under these conditions citation needed Use as an anti cancer agent editMain article Oncolytic herpes virus Modified Herpes simplex virus is considered as a potential therapy for cancer and has been extensively clinically tested to assess its oncolytic cancer killing ability 80 Interim overall survival data from Amgen s phase 3 trial of a genetically attenuated herpes virus suggests efficacy against melanoma 81 Use in neuronal connection tracing editMain article Viral neuronal tracing Herpes simplex virus is also used as a transneuronal tracer defining connections among neurons by virtue of traversing synapses 82 Other related outcomes editHSV 2 the most common cause of Mollaret s meningitis 83 HSV 1 can lead to potentially fatal cases of herpes simplex encephalitis 84 Herpes simplex viruses have also been studied in the central nervous system disorders such as multiple sclerosis but research has been conflicting and inconclusive 85 Following a diagnosis of genital herpes simplex infection patients may develop an episode of profound depression In addition to offering antiviral medication to alleviate symptoms and shorten their duration physicians must also address the mental health impact of a new diagnosis Providing information on the very high prevalence of these infections their effective treatments and future therapies in development may provide hope to patients who are otherwise demoralized citation needed Research editMain article Herpes simplex research There exist commonly used vaccines to some herpesviruses such as the veterinary vaccine HVT LT Turkey herpesvirus vector laryngotracheitis vaccine However it prevents atherosclerosis which histologically mirrors atherosclerosis in humans in target animals vaccinated 86 87 The only human vaccines available for herpesviruses are for Varicella zoster virus given to children around their first birthday to prevent chickenpox varicella or to adults to prevent an outbreak of shingles herpes zoster There is however no human vaccine for herpes simplex viruses As of 2022 there are active pre clinical and clinical studies underway on herpes simplex in humans vaccines are being developed for both treatment and prevention citation needed References edit a b c Ryan KJ Ray CG eds 2004 Sherris Medical Microbiology 4th ed McGraw Hill pp 555 62 ISBN 978 0 8385 8529 0 Chayavichitsilp P Buckwalter JV Krakowski AC Friedlander SF April 2009 Herpes simplex Pediatr Rev 30 4 119 29 quiz 130 doi 10 1542 pir 30 4 119 PMID 19339385 S2CID 34735917 Herpes simplex virus World Health Organization 31 January 2017 Prevalence of Herpes Simplex Virus Type 1 and 2 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