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Thrombin

Prothrombin (Coagulation factor II) is encoded in the human by the F2 gene. It is proteolytically cleaved during the clotting process by the prothrombinase enzyme complex to form thrombin.

F2
Available structures
PDBOrtholog search: PDBe RCSB
Identifiers
AliasesF2, PT, RPRGL2, THPH1, coagulation factor II, thrombin
External IDsOMIM: 176930 MGI: 88380 HomoloGene: 426 GeneCards: F2
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_000506
NM_001311257

NM_010168

RefSeq (protein)

NP_000497

NP_034298

Location (UCSC)Chr 11: 46.72 – 46.74 MbChr 2: 91.46 – 91.47 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse
Role of thrombin in the blood coagulation cascade

Thrombin (Factor IIa) (EC 3.4.21.5, fibrinogenase, thrombase, thrombofort, topical, thrombin-C, tropostasin, activated blood-coagulation factor II, E thrombin, beta-thrombin, gamma-thrombin) is a serine protease, that converts fibrinogen into strands of insoluble fibrin, as well as catalyzing many other coagulation-related reactions.[5][6]

History edit

After the description of fibrinogen and fibrin, Alexander Schmidt hypothesised the existence of an enzyme that converts fibrinogen into fibrin in 1872.[7]

Prothrombin was discovered by Pekelharing in 1894.[8][9][10]

Physiology edit

Synthesis edit

Thrombin is produced by the enzymatic cleavage of two sites on prothrombin by activated Factor X (Xa). The activity of factor Xa is greatly enhanced by binding to activated Factor V (Va), termed the prothrombinase complex. Prothrombin is produced in the liver and is co-translationally modified in a vitamin K-dependent reaction that converts 10-12 glutamic acids in the N terminus of the molecule to gamma-carboxyglutamic acid (Gla).[11] In the presence of calcium, the Gla residues promote the binding of prothrombin to phospholipid bilayers. Deficiency of vitamin K or administration of the anticoagulant warfarin inhibits the production of gamma-carboxyglutamic acid residues, slowing the activation of the coagulation cascade.

In human adults, the normal blood level of antithrombin activity has been measured to be around 1.1 units/mL. Newborn levels of thrombin steadily increase after birth to reach normal adult levels, from a level of around 0.5 units/mL 1 day after birth, to a level of around 0.9 units/mL after 6 months of life.[12]

Mechanism of action edit

In the blood coagulation pathway, thrombin acts to convert factor XI to XIa, VIII to VIIIa, V to Va, fibrinogen to fibrin, and XIII to XIIIa. In the conversion of fibrinogen into fibrin, thrombin catalyzes the cleavage of fibrinopeptides A and B from the respective and chains of fibrinogen to form fibrin monomers.[13]

Factor XIIIa is a transglutaminase that catalyzes the formation of covalent bonds between lysine and glutamine residues in fibrin. The covalent bonds increase the stability of the fibrin clot. Thrombin interacts with thrombomodulin.[14][15]

As part of its activity in the coagulation cascade, thrombin also promotes platelet activation and aggregation via activation of protease-activated receptors on the cell membrane of the platelet.

Negative feedback edit

Thrombin bound to thrombomodulin activates protein C, an inhibitor of the coagulation cascade. The activation of protein C is greatly enhanced following the binding of thrombin to thrombomodulin, an integral membrane protein expressed by endothelial cells. Activated protein C inactivates factors Va and VIIIa. Binding of activated protein C to protein S leads to a modest increase in its activity. Thrombin is also inactivated by antithrombin, a serine protease inhibitor.

Structure edit

 
Anchoring of bovine prothrombin to the membrane through its Gla domain.[16]

The molecular weight of prothrombin is approximately 72,000 Da. The catalytic domain is released from prothrombin fragment 1.2 to create the active enzyme thrombin, which has a molecular weight of 36,000 Da. Structurally, it is a member of the large PA clan of proteases.

Prothrombin is composed of four domains; an N-terminal Gla domain, two kringle domains and a C-terminal trypsin-like serine protease domain. Factor Xa with factor V as a cofactor leads to cleavage of the Gla and two Kringle domains (forming together a fragment called fragment 1.2) and leave thrombin, consisting solely of the serine protease domain.[17]

As is the case for all serine proteases, prothrombin is converted to active thrombin by proteolysis of an internal peptide bond, exposing a new N-terminal Ile-NH3. The historic model of activation of serine proteases involves insertion of this newly formed N-terminus of the heavy chain into the β-barrel promoting the correct conformation of the catalytic residues.[18] Contrary to crystal structures of active thrombin, hydrogen-deuterium exchange mass spectrometry studies indicate that this N-terminal Ile-NH3 does not become inserted into the β-barrel in the apo form of thrombin. However, binding of the active fragment of thrombomodulin appears to allosterically promote the active conformation of thrombin by inserting this N-terminal region.[19]

Gene edit

There are an estimated 30 people in the world that have been diagnosed with the congenital form of Factor II deficiency,[20] which should not be confused with the prothrombin G20210A mutation, which is also called the factor II mutation. Prothrombin G20210A is congenital.[21]

Prothrombin G20210A is not usually accompanied by other factor mutations (i.e., the most common is factor V Leiden). The gene may be inherited heterozygous (1 pair), or much more rarely, homozygous (2 pairs), and is not related to gender or blood type. Homozygous mutations increase the risk of thrombosis more than heterozygous mutations, but the relative increased risk is not well documented. Other potential risks for thrombosis, such as oral contraceptives may be additive. The previously reported relationship of inflammatory bowel disease (i.e., Crohn's disease or ulcerative colitis) and prothrombin G20210A or factor V Leiden mutation have been contradicted by research.[22]

Role in disease edit

Activation of prothrombin is crucial in physiological and pathological coagulation. Various rare diseases involving prothrombin have been described (e.g., hypoprothrombinemia). Anti-prothrombin antibodies in autoimmune disease may be a factor in the formation of the lupus anticoagulant (also known as antiphospholipid syndrome). Hyperprothrombinemia can be caused by the G20210A mutation.

Thrombin, a potent vasoconstrictor and mitogen, is implicated as a major factor in vasospasm following subarachnoid hemorrhage. Blood from a ruptured cerebral aneurysm clots around a cerebral artery, releasing thrombin. This can induce an acute and prolonged narrowing of the blood vessel, potentially resulting in cerebral ischemia and infarction (stroke).

Beyond its key role in the dynamic process of thrombus formation, thrombin has a pronounced pro-inflammatory character, which may influence the onset and progression of atherosclerosis. Acting via its specific cell membrane receptors (protease activated receptors: PAR-1, PAR-3 and PAR-4), which are abundantly expressed in all arterial vessel wall constituents, thrombin has the potential to exert pro-atherogenic actions such as inflammation, leukocyte recruitment into the atherosclerotic plaque, enhanced oxidative stress, migration and proliferation of vascular smooth muscle cells, apoptosis and angiogenesis.[23][24][25]

Thrombin is implicated in the physiology of blood clots. Its presence indicates the existence of a clot. In 2013 a system for detecting the presence of thrombin was developed in mice. It combines peptide-coated iron oxide attached to "reporter chemicals". When a peptide binds to a thrombin molecule, the report is released and appears in the urine where it can be detected. Human testing has not been conducted.[26]

Applications edit

Research tool edit

Due to its high proteolytic specificity, thrombin is a valuable biochemical tool. The thrombin cleavage site (Leu-Val-Pro-Arg-Gly-Ser) is commonly included in linker regions of recombinant fusion protein constructs. Following purification of the fusion protein, thrombin can be used to selectively cleave between the arginine and glycine residues of the cleavage site, effectively removing the purification tag from the protein of interest with a high degree of specificity.

Medicine and surgery edit

Prothrombin complex concentrate and fresh frozen plasma are prothrombin-rich coagulation factor preparations that can be used to correct deficiencies (usually due to medication) of prothrombin. Indications include intractable bleeding due to warfarin.

Manipulation of prothrombin is central to the mode of action of most anticoagulants. Warfarin and related drugs inhibit vitamin K-dependent carboxylation of several coagulation factors, including prothrombin. Heparin increases the affinity of antithrombin to thrombin (as well as factor Xa). The direct thrombin inhibitors, a newer class of medication, directly inhibit thrombin by binding to its active site.

Recombinant thrombin is available as a powder for reconstitution into aqueous solution. It can be applied topically during surgery, as an aid to hemostasis. It can be useful for controlling minor bleeding from capillaries and small venules, but ineffective and not indicated for massive or brisk arterial bleeding.[27][28][29]

Food production edit

Thrombin, combined with fibrinogen, is sold under the brand name Fibrimex for use as a binding agent for meat. Both proteins in Fibrimex derives from porcine or bovine blood.[30] According to the manufacturer it can be used to produce new kinds of mixed meats (for example combining beef and fish seamlessly). The manufacturer also states that it can be used to combine whole muscle meat, form and portion these, thus cutting down on production costs without a loss in quality.[31]

General secretary Jan Bertoft of Swedish Consumers' Association has stated that "there is danger of misleading the consumers since there is no way to tell this reconstituted meat from real meat".[30]

See also edit

References edit

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000180210 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000027249 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Royle NJ, Irwin DM, Koschinsky ML, MacGillivray RT, Hamerton JL (May 1987). "Human genes encoding prothrombin and ceruloplasmin map to 11p11-q12 and 3q21-24, respectively". Somatic Cell and Molecular Genetics. 13 (3): 285–92. doi:10.1007/BF01535211. PMID 3474786. S2CID 45686258.
  6. ^ Degen SJ, Davie EW (September 1987). "Nucleotide sequence of the gene for human prothrombin". Biochemistry. 26 (19): 6165–77. doi:10.1021/bi00393a033. PMID 2825773.
  7. ^ Schmidt A (1872). "Neue Untersuchungen ueber die Fasserstoffesgerinnung". Pflügers Archiv für die gesamte Physiologie. 6: 413–538. doi:10.1007/BF01612263. S2CID 37273997.
  8. ^ Kaushansky K, Lichtman M, Prchal J, Levi M, Press O, Burns L, Caligiuri M (2015). Williams Hematology. McGraw-Hill. p. 1918. ISBN 9780071833011.
  9. ^ Quick AJ (1957). Hemorrhagic Diseases. Philadelphia: Lea and Febiger. pp. 451–490. OCLC 599096191.
  10. ^ Morawitz P (1905). "Die Chemie der Blutgerinnung". Ergeb Physiol. 4: 307–422. doi:10.1007/BF02321003. S2CID 84003009.
  11. ^ Knorre DG, Kudryashova NV, Godovikova TS (October 2009). "Chemical and functional aspects of posttranslational modification of proteins". Acta Naturae. 1 (3): 29–51. doi:10.32607/20758251-2009-1-3-29-51. PMC 3347534. PMID 22649613.
  12. ^ Andrew M, Paes B, Milner R, Johnston M, Mitchell L, Tollefsen DM, Powers P (July 1987). "Development of the human coagulation system in the full-term infant". Blood. 70 (1): 165–72. doi:10.1182/blood.V70.1.165.165. PMID 3593964.
  13. ^ Wolberg AS (September 2012). "Determinants of fibrin formation, structure, and function". Curr Opin Hematol. 19 (5): 349–56. doi:10.1097/MOH.0b013e32835673c2. PMID 22759629. S2CID 11358104.
  14. ^ Bajzar L, Morser J, Nesheim M (July 1996). "TAFI, or plasma procarboxypeptidase B, couples the coagulation and fibrinolytic cascades through the thrombin-thrombomodulin complex". The Journal of Biological Chemistry. 271 (28): 16603–8. doi:10.1074/jbc.271.28.16603. PMID 8663147.
  15. ^ Jakubowski HV, Owen WG (July 1989). "Macromolecular specificity determinants on thrombin for fibrinogen and thrombomodulin". The Journal of Biological Chemistry. 264 (19): 11117–21. doi:10.1016/S0021-9258(18)60437-5. PMID 2544585.
  16. ^ PDB: 1nl2​; Huang M, Rigby AC, Morelli X, Grant MA, Huang G, Furie B, Seaton B, Furie BC (September 2003). "Structural basis of membrane binding by Gla domains of vitamin K-dependent proteins". Nature Structural Biology. 10 (9): 751–6. doi:10.1038/nsb971. PMID 12923575. S2CID 7751100.
  17. ^ Davie EW, Kulman JD (April 2006). "An overview of the structure and function of thrombin". Seminars in Thrombosis and Hemostasis. 32 (Suppl 1): 3–15. doi:10.1055/s-2006-939550. PMID 16673262. S2CID 36616995.
  18. ^ Huber R, Bode W (1978-03-01). "Structural basis of the activation and action of trypsin". Accounts of Chemical Research. 11 (3): 114–122. doi:10.1021/ar50123a006. ISSN 0001-4842.
  19. ^ Handley LD, Treuheit NA, Venkatesh VJ, Komives EA (November 2015). "Thrombomodulin Binding Selects the Catalytically Active Form of Thrombin". Biochemistry. 54 (43): 6650–8. doi:10.1021/acs.biochem.5b00825. PMC 4697735. PMID 26468766.
  20. ^ Degen SJ, McDowell SA, Sparks LM, Scharrer I (February 1995). "Prothrombin Frankfurt: a dysfunctional prothrombin characterized by substitution of Glu-466 by Ala". Thrombosis and Haemostasis. 73 (2): 203–9. doi:10.1055/s-0038-1653751. PMID 7792730. S2CID 20144699.
  21. ^ Varga EA, Moll S (July 2004). "Cardiology patient pages. Prothrombin 20210 mutation (factor II mutation)". Circulation. 110 (3): e15–8. doi:10.1161/01.CIR.0000135582.53444.87. PMID 15262854.
  22. ^ Bernstein CN, Sargent M, Vos HL, Rosendaal FR (February 2007). "Mutations in clotting factors and inflammatory bowel disease". The American Journal of Gastroenterology. 102 (2): 338–43. doi:10.1111/j.1572-0241.2006.00974.x. PMID 17156138. S2CID 19895315.
  23. ^ Borissoff JI, Spronk HM, Heeneman S, ten Cate H (June 2009). "Is thrombin a key player in the 'coagulation-atherogenesis' maze?". Cardiovascular Research. 82 (3): 392–403. doi:10.1093/cvr/cvp066. PMID 19228706.
  24. ^ Borissoff JI, Heeneman S, Kilinç E, Kassák P, Van Oerle R, Winckers K, Govers-Riemslag JW, Hamulyák K, Hackeng TM, Daemen MJ, ten Cate H, Spronk HM (August 2010). "Early atherosclerosis exhibits an enhanced procoagulant state". Circulation. 122 (8): 821–30. doi:10.1161/CIRCULATIONAHA.109.907121. PMID 20697022.
  25. ^ Borissoff JI, Spronk HM, ten Cate H (May 2011). "The hemostatic system as a modulator of atherosclerosis". The New England Journal of Medicine. 364 (18): 1746–60. doi:10.1056/NEJMra1011670. PMID 21542745.
  26. ^ Economist (2013-11-05). "Nanomedicine: Particle physiology". The Economist. Retrieved 2013-12-15.
  27. ^ Chapman WC, Singla N, Genyk Y, McNeil JW, Renkens KL, Reynolds TC, Murphy A, Weaver FA (August 2007). "A phase 3, randomized, double-blind comparative study of the efficacy and safety of topical recombinant human thrombin and bovine thrombin in surgical hemostasis". Journal of the American College of Surgeons. 205 (2): 256–65. doi:10.1016/j.jamcollsurg.2007.03.020. PMID 17660072.
  28. ^ Singla NK, Ballard JL, Moneta G, Randleman CD, Renkens KL, Alexander WA (July 2009). "A phase 3b, open-label, single-group immunogenicity and safety study of topical recombinant thrombin in surgical hemostasis". Journal of the American College of Surgeons. 209 (1): 68–74. doi:10.1016/j.jamcollsurg.2009.03.016. PMID 19651065.
  29. ^ Greenhalgh DG, Gamelli RL, Collins J, Sood R, Mozingo DW, Gray TE, Alexander WA (2009). "Recombinant thrombin: safety and immunogenicity in burn wound excision and grafting". Journal of Burn Care & Research. 30 (3): 371–9. doi:10.1097/BCR.0b013e3181a28979. PMID 19349898. S2CID 3678462.
  30. ^ a b "Sverige röstade ja till köttklister" [Sweden voted in favor of the meat paste] (in Swedish). Dagens Nyheter. 2010-02-09. Retrieved 2010-10-17.
  31. ^ "Welcome to Fibrimex". Fibrimex website. Sonac. Retrieved 2019-02-28.

Further reading edit

  • Esmon CT (July 1995). "Thrombomodulin as a model of molecular mechanisms that modulate protease specificity and function at the vessel surface". FASEB Journal. 9 (10): 946–55. doi:10.1096/fasebj.9.10.7615164. PMID 7615164. S2CID 19565674.
  • Wu H, Zhang Z, Li Y, Zhao R, Li H, Song Y, Qi J, Wang J (October 2010). "Time course of upregulation of inflammatory mediators in the hemorrhagic brain in rats: correlation with brain edema". Neurochemistry International. 57 (3): 248–53. doi:10.1016/j.neuint.2010.06.002. PMC 2910823. PMID 20541575.
  • Lenting PJ, van Mourik JA, Mertens K (December 1998). "The life cycle of coagulation factor VIII in view of its structure and function". Blood. 92 (11): 3983–96. doi:10.1182/blood.V92.11.3983. PMID 9834200.
  • Plow EF, Cierniewski CS, Xiao Z, Haas TA, Byzova TV (July 2001). "AlphaIIbbeta3 and its antagonism at the new millennium". Thrombosis and Haemostasis. 86 (1): 34–40. doi:10.1055/s-0037-1616198. PMID 11487023. S2CID 74389210.
  • Maragoudakis ME, Tsopanoglou NE, Andriopoulou P (April 2002). "Mechanism of thrombin-induced angiogenesis". Biochemical Society Transactions. 30 (2): 173–7. doi:10.1042/BST0300173. PMID 12023846.
  • Howell DC, Laurent GJ, Chambers RC (April 2002). "Role of thrombin and its major cellular receptor, protease-activated receptor-1, in pulmonary fibrosis". Biochemical Society Transactions. 30 (2): 211–6. doi:10.1042/BST0300211. PMID 12023853. S2CID 32822567.
  • Firth SM, Baxter RC (December 2002). "Cellular actions of the insulin-like growth factor binding proteins". Endocrine Reviews. 23 (6): 824–54. doi:10.1210/er.2001-0033. PMID 12466191.
  • Minami T, Sugiyama A, Wu SQ, Abid R, Kodama T, Aird WC (January 2004). "Thrombin and phenotypic modulation of the endothelium". Arteriosclerosis, Thrombosis, and Vascular Biology. 24 (1): 41–53. doi:10.1161/01.ATV.0000099880.09014.7D. PMID 14551154.
  • De Cristofaro R, De Candia E (June 2003). "Thrombin domains: structure, function and interaction with platelet receptors". Journal of Thrombosis and Thrombolysis. 15 (3): 151–63. doi:10.1023/B:THRO.0000011370.80989.7b. PMID 14739624.
  • Tsopanoglou NE, Maragoudakis ME (February 2004). "Role of thrombin in angiogenesis and tumor progression". Seminars in Thrombosis and Hemostasis. 30 (1): 63–9. doi:10.1055/s-2004-822971. PMID 15034798. S2CID 260320933.
  • Bode W (2007). "Structure and interaction modes of thrombin". Blood Cells, Molecules & Diseases. 36 (2): 122–30. doi:10.1016/j.bcmd.2005.12.027. PMID 16480903.
  • Wolberg AS (May 2007). "Thrombin generation and fibrin clot structure". Blood Reviews. 21 (3): 131–42. doi:10.1016/j.blre.2006.11.001. PMID 17208341.
  • Degen S (1995). "Prothrombin". In High K, Roberts H (eds.). Molecular Basis of Thrombosis and Hemostasis. Marcel Dekker. p. 75. ISBN 9780824795016.

External links edit

  • The MEROPS online database for peptidases and their inhibitors: S01.217 2019-09-19 at the Wayback Machine
  • Kujovich JL (February 2021). Adam MP, Ardinger HH, Pagon RA, et al. (eds.). "Prothrombin Thrombophilia". GeneReviews. Seattle WA: University of Washington, Seattle. PMID 20301327. NBK1148.
  • Anti-coagulation & proteases on YouTube by The Proteolysis Map-animation
  • PMAP: The Proteolysis Map/Thrombin
  • Thrombin: RCSB PDB Molecule of the Month 2013-10-05 at the Wayback Machine
  • Prothrombin Structure
  • PDBe-KB provides an overview of all the structure information available in the PDB for Human Thrombin.
  • PDBe-KB provides an overview of all the structure information available in the PDB for Mouse Thrombin.

thrombin, prothrombin, coagulation, factor, encoded, human, gene, proteolytically, cleaved, during, clotting, process, prothrombinase, enzyme, complex, form, thrombin, f2available, structurespdbortholog, search, pdbe, rcsblist, codes1a2c, 1a3b, 1a3e, 1abi, 1ab. Prothrombin Coagulation factor II is encoded in the human by the F2 gene It is proteolytically cleaved during the clotting process by the prothrombinase enzyme complex to form thrombin F2Available structuresPDBOrtholog search PDBe RCSBList of PDB id codes1A2C 1A3B 1A3E 1ABI 1ABJ 1AD8 1AE8 1AI8 1AIX 1AWF 1AWH 1AY6 1B5G 1B7X 1BA8 1BB0 1BCU 1BHX 1BMM 1BMN 1BTH 1C1U 1C1V 1C1W 1C4U 1C4V 1C4Y 1C5L 1C5N 1C5O 1CA8 1D3D 1D3P 1D3Q 1D3T 1D4P 1D6W 1D9I 1DE7 1DIT 1DM4 1DOJ 1DWB 1DWC 1DWD 1DX5 1E0F 1EB1 1EOJ 1EOL 1FPC 1G30 1G32 1G37 1GHV 1GHW 1GHX 1GHY 1GJ4 1GJ5 1H8D 1H8I 1HAI 1HAO 1HAP 1HBT 1HLT 1HUT 1HXE 1HXF 1IHS 1JMO 1JOU 1JWT 1K21 1K22 1KTS 1KTT 1LHC 1LHD 1LHE 1LHF 1LHG 1MH0 1MU6 1MU8 1MUE 1NM6 1NRN 1NRO 1NRP 1NRQ 1NRR 1NRS 1NT1 1NU7 1NU9 1NY2 1NZQ 1O0D 1O2G 1O5G 1OOK 1OYT 1P8V 1PPB 1QBV 1QHR 1QJ1 1QJ6 1QJ7 1QUR 1RD3 1RIW 1SB1 1SFQ 1SG8 1SGI 1SHH 1SL3 1SR5 1T4U 1T4V 1TA2 1TA6 1TB6 1THP 1THR 1THS 1TMB 1TMU 1TOM 1TQ0 1TQ7 1TWX 1UVS 1VR1 1VZQ 1W7G 1WAY 1WBG 1XM1 1XMN 1YPE 1YPG 1YPJ 1YPK 1YPL 1YPM 1Z71 1Z8I 1Z8J 1ZGI 1ZGV 1ZRB 2A0Q 2A2X 2A45 2AFQ 2ANK 2ANM 2B5T 2BDY 2BVR 2BVS 2BVX 2BXT 2BXU 2C8Y 2FEQ 2FES 2GDE 2GP9 2H9T 2HGT 2HNT 2HPP 2HPQ 2HWL 2JH0 2JH6 2OD3 2PGB 2PGQ 2PW8 2R2M 2THF 2ZFQ 2ZFR 2ZG0 2ZHE 2ZHF 2ZHW 2ZI2 2ZIQ 2ZNK 2ZO3 3B23 3B9F 3BEF 3BEI 3BF6 3BIU 3BIV 3BV9 3C1K 3C27 3D49 3DA9 3DD2 3DT0 3DUX 3E6P 3EE0 3EQ0 3F68 3GIC 3GIS 3HAT 3HKJ 3HTC 3JZ2 3LDX 3LU9 3NXP 3P17 3P6Z 3P70 3PO1 3QGN 3QLP 3QTO 3QTV 3QWC 3QX5 3R3G 3RLW 3RLY 3RM0 3RM2 3RML 3RMM 3RMN 3RMO 3S7H 3S7K 3SHA 3SHC 3SI3 3SI4 3SQE 3SQH 3SV2 3T5F 3TU7 3U69 3U8O 3U8R 3U8T 3U98 3U9A 3UTU 3UWJ 3VXE 3VXF 4BAH 4BAK 4BAM 4BAN 4BAO 4BAQ 4BOH 4DIH 4DII 4DT7 4DY7 4E05 4E06 4E7R 4H6S 4H6T 4HFP 4HTC 4THN 5GDS 7KME 8KME 1A46 1A4W 1A5G 1A61 1AFE 1AHT 1DWE 1FPH 1HAG 1HAH 1HDT 1HGT 1IHT 1NO9 1TBZ 1TMT 1UMA 2C8W 2C8X 2C8Z 2C90 2C93 2CF8 2CF9 2CN0 2JH5 2PKS 2UUF 2UUJ 2UUK 2V3H 2V3O 2ZC9 2ZDA 2ZDV 2ZF0 2ZFF 2ZFP 2ZGB 2ZGX 2ZHQ 3DHK 3EGK 3JZ1 3K65 3PMH 3QDZ 4AX9 4AYV 4AYY 4AZ2 4CH2 4CH8 4HZH 4I7Y 4LOY 4LXB 4LZ1 4LZ4 4MLF 4N3L 4NZE 4NZQ 4O03 4RKJ 4RKO 4RN6 4YES 4UD9 4UDW 4UE7 4UEH 5AF9 5AFY 5AFZ 5AHG 5CMX 4UFD 5EDM 5E8E 5EDK 4UFE 4UFG 4UFF 5A2M 5JDUIdentifiersAliasesF2 PT RPRGL2 THPH1 coagulation factor II thrombinExternal IDsOMIM 176930 MGI 88380 HomoloGene 426 GeneCards F2Gene location Human Chr Chromosome 11 human 1 Band11p11 2Start46 719 196 bp 1 End46 739 506 bp 1 Gene location Mouse Chr Chromosome 2 mouse 2 Band2 E1 2 50 63 cMStart91 455 665 bp 2 End91 466 759 bp 2 RNA expression patternBgeeHumanMouse ortholog Top expressed inright lobe of liveroocytesecondary oocytecerebellar hemispherepopliteal arteryfundusembryoright coronary arterybody of stomachsigmoid colonTop expressed inleft lobe of livergallbladderyolk sacsexually immature organismmorulasecondary oocyteprimitive streakstomachpancreasabdominal wallMore reference expression dataBioGPSMore reference expression dataGene ontologyMolecular functioncalcium ion binding signaling receptor binding peptidase activity hydrolase activity growth factor activity serine type peptidase activity thrombospondin receptor activity protein binding serine type endopeptidase activity lipopolysaccharide binding heparin binding enzyme activator activityCellular componentextracellular exosome blood microparticle endoplasmic reticulum lumen Golgi lumen plasma membrane extracellular region extracellular space external side of plasma membrane collagen containing extracellular matrixBiological processblood coagulation intrinsic pathway regulation of blood coagulation positive regulation of phosphatidylinositol 3 kinase signaling positive regulation of collagen biosynthetic process multicellular organism development peptidyl glutamic acid carboxylation acute phase response positive regulation of reactive oxygen species metabolic process endoplasmic reticulum to Golgi vesicle mediated transport positive regulation of cell growth cell surface receptor signaling pathway regulation of gene expression positive regulation of release of sequestered calcium ion into cytosol positive regulation of cell population proliferation leukocyte migration negative regulation of fibrinolysis positive regulation of blood coagulation regulation of cytosolic calcium ion concentration response to wounding signal peptide processing positive regulation of phospholipase C activating G protein coupled receptor signaling pathway regulation of cell shape hemostasis negative regulation of proteolysis negative regulation of platelet activation negative regulation of astrocyte differentiation positive regulation of protein phosphorylation fibrinolysis blood coagulation proteolysis platelet activation positive regulation of protein localization to nucleus positive regulation of lipid kinase activity regulation of complement activation antimicrobial humoral immune response mediated by antimicrobial peptide negative regulation of cytokine production involved in inflammatory response regulation of signaling receptor activity G protein coupled receptor signaling pathway positive regulation of receptor signaling pathway via JAK STAT blood coagulation fibrin clot formationSources Amigo QuickGOOrthologsSpeciesHumanMouseEntrez214714061EnsemblENSG00000180210ENSMUSG00000027249UniProtP00734P19221RefSeq mRNA NM 000506NM 001311257NM 010168RefSeq protein NP 000497NP 034298Location UCSC Chr 11 46 72 46 74 MbChr 2 91 46 91 47 MbPubMed search 3 4 WikidataView Edit HumanView Edit Mouse Role of thrombin in the blood coagulation cascade Thrombin Factor IIa EC 3 4 21 5 fibrinogenase thrombase thrombofort topical thrombin C tropostasin activated blood coagulation factor II E thrombin beta thrombin gamma thrombin is a serine protease that converts fibrinogen into strands of insoluble fibrin as well as catalyzing many other coagulation related reactions 5 6 Contents 1 History 2 Physiology 2 1 Synthesis 2 2 Mechanism of action 2 3 Negative feedback 3 Structure 4 Gene 5 Role in disease 6 Applications 6 1 Research tool 6 2 Medicine and surgery 6 3 Food production 7 See also 8 References 9 Further reading 10 External linksHistory editAfter the description of fibrinogen and fibrin Alexander Schmidt hypothesised the existence of an enzyme that converts fibrinogen into fibrin in 1872 7 Prothrombin was discovered by Pekelharing in 1894 8 9 10 Physiology editSynthesis edit Thrombin is produced by the enzymatic cleavage of two sites on prothrombin by activated Factor X Xa The activity of factor Xa is greatly enhanced by binding to activated Factor V Va termed the prothrombinase complex Prothrombin is produced in the liver and is co translationally modified in a vitamin K dependent reaction that converts 10 12 glutamic acids in the N terminus of the molecule to gamma carboxyglutamic acid Gla 11 In the presence of calcium the Gla residues promote the binding of prothrombin to phospholipid bilayers Deficiency of vitamin K or administration of the anticoagulant warfarin inhibits the production of gamma carboxyglutamic acid residues slowing the activation of the coagulation cascade In human adults the normal blood level of antithrombin activity has been measured to be around 1 1 units mL Newborn levels of thrombin steadily increase after birth to reach normal adult levels from a level of around 0 5 units mL 1 day after birth to a level of around 0 9 units mL after 6 months of life 12 Mechanism of action edit In the blood coagulation pathway thrombin acts to convert factor XI to XIa VIII to VIIIa V to Va fibrinogen to fibrin and XIII to XIIIa In the conversion of fibrinogen into fibrin thrombin catalyzes the cleavage of fibrinopeptides A and B from the respective Aa and Bb chains of fibrinogen to form fibrin monomers 13 Factor XIIIa is a transglutaminase that catalyzes the formation of covalent bonds between lysine and glutamine residues in fibrin The covalent bonds increase the stability of the fibrin clot Thrombin interacts with thrombomodulin 14 15 As part of its activity in the coagulation cascade thrombin also promotes platelet activation and aggregation via activation of protease activated receptors on the cell membrane of the platelet Negative feedback edit Thrombin bound to thrombomodulin activates protein C an inhibitor of the coagulation cascade The activation of protein C is greatly enhanced following the binding of thrombin to thrombomodulin an integral membrane protein expressed by endothelial cells Activated protein C inactivates factors Va and VIIIa Binding of activated protein C to protein S leads to a modest increase in its activity Thrombin is also inactivated by antithrombin a serine protease inhibitor Structure edit nbsp Anchoring of bovine prothrombin to the membrane through its Gla domain 16 The molecular weight of prothrombin is approximately 72 000 Da The catalytic domain is released from prothrombin fragment 1 2 to create the active enzyme thrombin which has a molecular weight of 36 000 Da Structurally it is a member of the large PA clan of proteases Prothrombin is composed of four domains an N terminal Gla domain two kringle domains and a C terminal trypsin like serine protease domain Factor Xa with factor V as a cofactor leads to cleavage of the Gla and two Kringle domains forming together a fragment called fragment 1 2 and leave thrombin consisting solely of the serine protease domain 17 As is the case for all serine proteases prothrombin is converted to active thrombin by proteolysis of an internal peptide bond exposing a new N terminal Ile NH3 The historic model of activation of serine proteases involves insertion of this newly formed N terminus of the heavy chain into the b barrel promoting the correct conformation of the catalytic residues 18 Contrary to crystal structures of active thrombin hydrogen deuterium exchange mass spectrometry studies indicate that this N terminal Ile NH3 does not become inserted into the b barrel in the apo form of thrombin However binding of the active fragment of thrombomodulin appears to allosterically promote the active conformation of thrombin by inserting this N terminal region 19 Gene editThere are an estimated 30 people in the world that have been diagnosed with the congenital form of Factor II deficiency 20 which should not be confused with the prothrombin G20210A mutation which is also called the factor II mutation Prothrombin G20210A is congenital 21 Prothrombin G20210A is not usually accompanied by other factor mutations i e the most common is factor V Leiden The gene may be inherited heterozygous 1 pair or much more rarely homozygous 2 pairs and is not related to gender or blood type Homozygous mutations increase the risk of thrombosis more than heterozygous mutations but the relative increased risk is not well documented Other potential risks for thrombosis such as oral contraceptives may be additive The previously reported relationship of inflammatory bowel disease i e Crohn s disease or ulcerative colitis and prothrombin G20210A or factor V Leiden mutation have been contradicted by research 22 Role in disease editActivation of prothrombin is crucial in physiological and pathological coagulation Various rare diseases involving prothrombin have been described e g hypoprothrombinemia Anti prothrombin antibodies in autoimmune disease may be a factor in the formation of the lupus anticoagulant also known as antiphospholipid syndrome Hyperprothrombinemia can be caused by the G20210A mutation Thrombin a potent vasoconstrictor and mitogen is implicated as a major factor in vasospasm following subarachnoid hemorrhage Blood from a ruptured cerebral aneurysm clots around a cerebral artery releasing thrombin This can induce an acute and prolonged narrowing of the blood vessel potentially resulting in cerebral ischemia and infarction stroke Beyond its key role in the dynamic process of thrombus formation thrombin has a pronounced pro inflammatory character which may influence the onset and progression of atherosclerosis Acting via its specific cell membrane receptors protease activated receptors PAR 1 PAR 3 and PAR 4 which are abundantly expressed in all arterial vessel wall constituents thrombin has the potential to exert pro atherogenic actions such as inflammation leukocyte recruitment into the atherosclerotic plaque enhanced oxidative stress migration and proliferation of vascular smooth muscle cells apoptosis and angiogenesis 23 24 25 Thrombin is implicated in the physiology of blood clots Its presence indicates the existence of a clot In 2013 a system for detecting the presence of thrombin was developed in mice It combines peptide coated iron oxide attached to reporter chemicals When a peptide binds to a thrombin molecule the report is released and appears in the urine where it can be detected Human testing has not been conducted 26 Applications editResearch tool edit Due to its high proteolytic specificity thrombin is a valuable biochemical tool The thrombin cleavage site Leu Val Pro Arg Gly Ser is commonly included in linker regions of recombinant fusion protein constructs Following purification of the fusion protein thrombin can be used to selectively cleave between the arginine and glycine residues of the cleavage site effectively removing the purification tag from the protein of interest with a high degree of specificity Medicine and surgery edit Prothrombin complex concentrate and fresh frozen plasma are prothrombin rich coagulation factor preparations that can be used to correct deficiencies usually due to medication of prothrombin Indications include intractable bleeding due to warfarin Manipulation of prothrombin is central to the mode of action of most anticoagulants Warfarin and related drugs inhibit vitamin K dependent carboxylation of several coagulation factors including prothrombin Heparin increases the affinity of antithrombin to thrombin as well as factor Xa The direct thrombin inhibitors a newer class of medication directly inhibit thrombin by binding to its active site Recombinant thrombin is available as a powder for reconstitution into aqueous solution It can be applied topically during surgery as an aid to hemostasis It can be useful for controlling minor bleeding from capillaries and small venules but ineffective and not indicated for massive or brisk arterial bleeding 27 28 29 Food production edit Thrombin combined with fibrinogen is sold under the brand name Fibrimex for use as a binding agent for meat Both proteins in Fibrimex derives from porcine or bovine blood 30 According to the manufacturer it can be used to produce new kinds of mixed meats for example combining beef and fish seamlessly The manufacturer also states that it can be used to combine whole muscle meat form and portion these thus cutting down on production costs without a loss in quality 31 General secretary Jan Bertoft of Swedish Consumers Association has stated that there is danger of misleading the consumers since there is no way to tell this reconstituted meat from real meat 30 See also editCerastocytin Fibrin glue Fibrinogen PA clan of proteases The Proteolysis Map Thrombin generation assayReferences edit a b c GRCh38 Ensembl release 89 ENSG00000180210 Ensembl May 2017 a b c GRCm38 Ensembl release 89 ENSMUSG00000027249 Ensembl May 2017 Human PubMed Reference National Center for Biotechnology Information U S National Library of Medicine Mouse PubMed Reference National Center for Biotechnology Information U S National Library of Medicine Royle NJ Irwin DM Koschinsky ML MacGillivray RT Hamerton JL May 1987 Human genes encoding prothrombin and ceruloplasmin map to 11p11 q12 and 3q21 24 respectively Somatic Cell and Molecular Genetics 13 3 285 92 doi 10 1007 BF01535211 PMID 3474786 S2CID 45686258 Degen SJ Davie EW September 1987 Nucleotide sequence of the gene for human prothrombin Biochemistry 26 19 6165 77 doi 10 1021 bi00393a033 PMID 2825773 Schmidt A 1872 Neue Untersuchungen ueber die Fasserstoffesgerinnung Pflugers Archiv fur die gesamte Physiologie 6 413 538 doi 10 1007 BF01612263 S2CID 37273997 Kaushansky K Lichtman M Prchal J Levi M Press O Burns L Caligiuri M 2015 Williams Hematology McGraw Hill p 1918 ISBN 9780071833011 Quick AJ 1957 Hemorrhagic Diseases Philadelphia Lea and Febiger pp 451 490 OCLC 599096191 Morawitz P 1905 Die Chemie der Blutgerinnung Ergeb Physiol 4 307 422 doi 10 1007 BF02321003 S2CID 84003009 Knorre DG Kudryashova NV Godovikova TS October 2009 Chemical and functional aspects of posttranslational modification of proteins Acta Naturae 1 3 29 51 doi 10 32607 20758251 2009 1 3 29 51 PMC 3347534 PMID 22649613 Andrew M Paes B Milner R Johnston M Mitchell L Tollefsen DM Powers P July 1987 Development of the human coagulation system in the full term infant Blood 70 1 165 72 doi 10 1182 blood V70 1 165 165 PMID 3593964 Wolberg AS September 2012 Determinants of fibrin formation structure and function Curr Opin Hematol 19 5 349 56 doi 10 1097 MOH 0b013e32835673c2 PMID 22759629 S2CID 11358104 Bajzar L Morser J Nesheim M July 1996 TAFI or plasma procarboxypeptidase B couples the coagulation and fibrinolytic cascades through the thrombin thrombomodulin complex The Journal of Biological Chemistry 271 28 16603 8 doi 10 1074 jbc 271 28 16603 PMID 8663147 Jakubowski HV Owen WG July 1989 Macromolecular specificity determinants on thrombin for fibrinogen and thrombomodulin The Journal of Biological Chemistry 264 19 11117 21 doi 10 1016 S0021 9258 18 60437 5 PMID 2544585 PDB 1nl2 Huang M Rigby AC Morelli X Grant MA Huang G Furie B Seaton B Furie BC September 2003 Structural basis of membrane binding by Gla domains of vitamin K dependent proteins Nature Structural Biology 10 9 751 6 doi 10 1038 nsb971 PMID 12923575 S2CID 7751100 Davie EW Kulman JD April 2006 An overview of the structure and function of thrombin Seminars in Thrombosis and Hemostasis 32 Suppl 1 3 15 doi 10 1055 s 2006 939550 PMID 16673262 S2CID 36616995 Huber R Bode W 1978 03 01 Structural basis of the activation and action of trypsin Accounts of Chemical Research 11 3 114 122 doi 10 1021 ar50123a006 ISSN 0001 4842 Handley LD Treuheit NA Venkatesh VJ Komives EA November 2015 Thrombomodulin Binding Selects the Catalytically Active Form of Thrombin Biochemistry 54 43 6650 8 doi 10 1021 acs biochem 5b00825 PMC 4697735 PMID 26468766 Degen SJ McDowell SA Sparks LM Scharrer I February 1995 Prothrombin Frankfurt a dysfunctional prothrombin characterized by substitution of Glu 466 by Ala Thrombosis and Haemostasis 73 2 203 9 doi 10 1055 s 0038 1653751 PMID 7792730 S2CID 20144699 Varga EA Moll S July 2004 Cardiology patient pages Prothrombin 20210 mutation factor II mutation Circulation 110 3 e15 8 doi 10 1161 01 CIR 0000135582 53444 87 PMID 15262854 Bernstein CN Sargent M Vos HL Rosendaal FR February 2007 Mutations in clotting factors and inflammatory bowel disease The American Journal of Gastroenterology 102 2 338 43 doi 10 1111 j 1572 0241 2006 00974 x PMID 17156138 S2CID 19895315 Borissoff JI Spronk HM Heeneman S ten Cate H June 2009 Is thrombin a key player in the coagulation atherogenesis maze Cardiovascular Research 82 3 392 403 doi 10 1093 cvr cvp066 PMID 19228706 Borissoff JI Heeneman S Kilinc E Kassak P Van Oerle R Winckers K Govers Riemslag JW Hamulyak K Hackeng TM Daemen MJ ten Cate H Spronk HM August 2010 Early atherosclerosis exhibits an enhanced procoagulant state Circulation 122 8 821 30 doi 10 1161 CIRCULATIONAHA 109 907121 PMID 20697022 Borissoff JI Spronk HM ten Cate H May 2011 The hemostatic system as a modulator of atherosclerosis The New England Journal of Medicine 364 18 1746 60 doi 10 1056 NEJMra1011670 PMID 21542745 Economist 2013 11 05 Nanomedicine Particle physiology The Economist Retrieved 2013 12 15 Chapman WC Singla N Genyk Y McNeil JW Renkens KL Reynolds TC Murphy A Weaver FA August 2007 A phase 3 randomized double blind comparative study of the efficacy and safety of topical recombinant human thrombin and bovine thrombin in surgical hemostasis Journal of the American College of Surgeons 205 2 256 65 doi 10 1016 j jamcollsurg 2007 03 020 PMID 17660072 Singla NK Ballard JL Moneta G Randleman CD Renkens KL Alexander WA July 2009 A phase 3b open label single group immunogenicity and safety study of topical recombinant thrombin in surgical hemostasis Journal of the American College of Surgeons 209 1 68 74 doi 10 1016 j jamcollsurg 2009 03 016 PMID 19651065 Greenhalgh DG Gamelli RL Collins J Sood R Mozingo DW Gray TE Alexander WA 2009 Recombinant thrombin safety and immunogenicity in burn wound excision and grafting Journal of Burn Care amp Research 30 3 371 9 doi 10 1097 BCR 0b013e3181a28979 PMID 19349898 S2CID 3678462 a b Sverige rostade ja till kottklister Sweden voted in favor of the meat paste in Swedish Dagens Nyheter 2010 02 09 Retrieved 2010 10 17 Welcome to Fibrimex Fibrimex website Sonac Retrieved 2019 02 28 Further reading editEsmon CT July 1995 Thrombomodulin as a model of molecular mechanisms that modulate protease specificity and function at the vessel surface FASEB Journal 9 10 946 55 doi 10 1096 fasebj 9 10 7615164 PMID 7615164 S2CID 19565674 Wu H Zhang Z Li Y Zhao R Li H Song Y Qi J Wang J October 2010 Time course of upregulation of inflammatory mediators in the hemorrhagic brain in rats correlation with brain edema Neurochemistry International 57 3 248 53 doi 10 1016 j neuint 2010 06 002 PMC 2910823 PMID 20541575 Lenting PJ van Mourik JA Mertens K December 1998 The life cycle of coagulation factor VIII in view of its structure and function Blood 92 11 3983 96 doi 10 1182 blood V92 11 3983 PMID 9834200 Plow EF Cierniewski CS Xiao Z Haas TA Byzova TV July 2001 AlphaIIbbeta3 and its antagonism at the new millennium Thrombosis and Haemostasis 86 1 34 40 doi 10 1055 s 0037 1616198 PMID 11487023 S2CID 74389210 Maragoudakis ME Tsopanoglou NE Andriopoulou P April 2002 Mechanism of thrombin induced angiogenesis Biochemical Society Transactions 30 2 173 7 doi 10 1042 BST0300173 PMID 12023846 Howell DC Laurent GJ Chambers RC April 2002 Role of thrombin and its major cellular receptor protease activated receptor 1 in pulmonary fibrosis Biochemical Society Transactions 30 2 211 6 doi 10 1042 BST0300211 PMID 12023853 S2CID 32822567 Firth SM Baxter RC December 2002 Cellular actions of the insulin like growth factor binding proteins Endocrine Reviews 23 6 824 54 doi 10 1210 er 2001 0033 PMID 12466191 Minami T Sugiyama A Wu SQ Abid R Kodama T Aird WC January 2004 Thrombin and phenotypic modulation of the endothelium Arteriosclerosis Thrombosis and Vascular Biology 24 1 41 53 doi 10 1161 01 ATV 0000099880 09014 7D PMID 14551154 De Cristofaro R De Candia E June 2003 Thrombin domains structure function and interaction with platelet receptors Journal of Thrombosis and Thrombolysis 15 3 151 63 doi 10 1023 B THRO 0000011370 80989 7b PMID 14739624 Tsopanoglou NE Maragoudakis ME February 2004 Role of thrombin in angiogenesis and tumor progression Seminars in Thrombosis and Hemostasis 30 1 63 9 doi 10 1055 s 2004 822971 PMID 15034798 S2CID 260320933 Bode W 2007 Structure and interaction modes of thrombin Blood Cells Molecules amp Diseases 36 2 122 30 doi 10 1016 j bcmd 2005 12 027 PMID 16480903 Wolberg AS May 2007 Thrombin generation and fibrin clot structure Blood Reviews 21 3 131 42 doi 10 1016 j blre 2006 11 001 PMID 17208341 Degen S 1995 Prothrombin In High K Roberts H eds Molecular Basis of Thrombosis and Hemostasis Marcel Dekker p 75 ISBN 9780824795016 External links editThe MEROPS online database for peptidases and their inhibitors S01 217 Archived 2019 09 19 at the Wayback Machine Kujovich JL February 2021 Adam MP Ardinger HH Pagon RA et al eds Prothrombin Thrombophilia GeneReviews Seattle WA University of Washington Seattle PMID 20301327 NBK1148 Anti coagulation amp proteases on YouTube by The Proteolysis Map animation 1 PMAP The Proteolysis Map Thrombin Thrombin RCSB PDB Molecule of the Month Archived 2013 10 05 at the Wayback Machine Prothrombin Structure PDBe KB provides an overview of all the structure information available in the PDB for Human Thrombin PDBe KB provides an overview of all the structure information available in the PDB for Mouse Thrombin Portal nbsp Biology Retrieved from https en wikipedia org w index php title Thrombin amp oldid 1223081692, wikipedia, wiki, book, books, library,

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