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Chloroflexota

The Chloroflexota are a phylum of bacteria containing isolates with a diversity of phenotypes, including members that are aerobic thermophiles, which use oxygen and grow well in high temperatures; anoxygenic phototrophs, which use light for photosynthesis (green non-sulfur bacteria); and anaerobic halorespirers, which uses halogenated organics (such as the toxic chlorinated ethenes and polychlorinated biphenyls) as electron acceptors.

Chloroflexota
Scientific classification
Domain: Bacteria
Clade: Terrabacteria
Phylum: Chloroflexota
Garrity and Holt 2021[1]
Classes
Synonyms
  • "Chlorobacteria" Cavalier-Smith 2006
  • "Chloroflexi" Garrity and Holt 2001
  • "Eobacteria" Cavalier-Smith 2002
  • "Chloroflexota" Whitman et al. 2018
  • "Chloroflexaeota" Oren et al. 2015
  • Thermomicrobiota Oren & Garrity 2021

The members of the phylum Chloroflexota are monoderms (that is, have one cell membrane with no outer membrane), but they stain mostly gram-negative.[2] Many well-studied phyla of bacteria are diderms and stain gram-negative, whereas well-known monoderms that stain Gram-positive include Firmicutes (or Bacillota) (low G+C gram-positives), Actinomycetota (high-G+C gram-positives) and Deinococcota (gram-positive diderms with thick peptidoglycan).

History

The taxon name was created in the 2001 edition of Volume 1 of Bergey's Manual of Systematic Bacteriology and is the Latin plural of the name Chloroflexus, the name of the type genus of the phylum, a common practice.[3]

In 1987, Carl Woese, regarded as one of the forerunner of the molecular phylogeny revolution, divided Eubacteria into 11 divisions based on 16S ribosomal RNA (SSU) sequences and grouped the genera Chloroflexus, Herpetosiphon and Thermomicrobium into the "green non-sulfur bacteria and relatives",[4][5] which was temporarily renamed as "Chloroflexi" in Volume One of Bergey's Manual of Systematic Bacteriology.[6]

Chloroflexota being a deep branching phylum (see Bacterial phyla), it was considered in Volume One of Bergey's Manual of Systematic Bacteriology to include a single class with the same name.[6] Since 2001, however, new classes have been created thanks to newly discovered species, and the phylum Chloroflexi is now divided into several classes.

"Dehalococcoidetes" is a placeholder name given by Hugenholtz & Stackebrandt, 2004,[7] after "Dehalococcoides ethenogenes" a species partially described in 1997.[8] The first species fully described was Dehalogenimonas lykanthroporepellens, by Moe et al. 2009,[9] but in the description of that species the class was not made official nor were families or orders laid out as the two species share only 90% 16S ribosomal RNA identity, meaning that they could fall in different families or even orders.[9]

Recent phylogenetic analysis of the Chloroflexota has found very weak support for the grouping together of the different classes currently part of the phylum.[10] The six classes that make up the phylum did not consistently form a well-supported clade in phylogenetic trees based on concatenated sequences for large datasets of proteins, and no conserved signature indels were identified that were uniquely shared by the entire phylum.[10] However, the classes Chloroflexi and Thermomicrobia were found to group together consistently by both the usual phylogenetic means and the identification of shared conserved signature indels in the 50S ribosomal protein L19 and the enzyme UDP-glucose 4-epimerase.[10] It has been suggested that the phylum Chloroflexi sensu stricto should comprise only the classes Chloroflexi and Thermomicrobia, and the other four classes ("Dehalococcoidetes," Anaerolineae, Caldilineae and Ktedonobacteria) may represent one or more independent phyla branching in the neighborhood of the Chloroflexi.[10]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[11] and National Center for Biotechnology Information (NCBI).[12]

16S rRNA based LTP_12_2021[13][14][15] 120 marker proteins based GTDB 07-RS207[16][17][18]
Tepidiformia
Tepidiformales
Tepidiformaceae

Tepidiforma

Dehalococcoidia
"Caldilineia"
Caldilineales
Caldilineaceae

Litorilinea

Caldilinea

Ardenticatenia
Ardenticatenales
Ardenticatenaceae

Ardenticatena

"Anaerolineia"
Ktedonobacteria
Thermogemmatisporales

Thermogemmatispora {Thermogemmatisporaceae}

Ktedonobacteriales

Thermosporothrix {Thermosporotrichaceae}

Ktedonobacter {Ktedonobacteraceae}

Ktedonosporobacter {Ktedonosporobacteraceae}

Reticulibacteraceae

Reticulibacter

Dictyobacteraceae

Tengunoibacter

Dictyobacter

Thermoflexus {Thermoflexia: Thermoflexales: Thermoflexaceae}

"Thermomicrobiia"
Sphaerobacterales
Thermomicrobiales
Thermomicrobiaceae

Thermomicrobium

Thermorudis

Chloroflexia

Kallotenue {Kallotenuales: Kallotenuaceae}

Herpetosiphonales
Herpetosiphonaceae

Herpetosiphon

Chloroflexales
Roseiflexaceae

Roseiflexus

Chloroflexaceae

Heliothrix

Oscillochloris

Chloroflexus

"Ca Limnocylindrus" {"Limnocylindria": "Limnocylindrales": "Limnocylindraceae"}

Ktedonobacteria
Ktedonobacteriales
Ktedonobacteriaceae

Thermogemmatispora

Ktedonosporobacter

Ktedonobacter

Thermosporothrix

Tengunoibacter

Dictyobacter

Dehalococcoidia
Tepidiformales
Tepidiformaceae

Tepidiforma

Dehalococcoidales
"Caldilineia"

Ardenticatena {Ardenticatenales: Ardenticatenaceae}

"Caldilineidae"
Caldilineales
Caldilineaceae

Caldilinea

Litorilinea

"Anaerolineidae"
Thermoflexales
Thermoflexaceae

"Ca. Roseilinea"

Thermoflexus

"Ca. Promineifilum" {"Promineofilales": "Promineofilaceae"}

Aggregatilineales
Aggregatilineaceae

Aggregatilinea

Anaerolineales
Chloroflexia
"Thermobaculales"
"Thermobaculaceae"

Thermobaculum

Thermomicrobiales
Thermomicrobiaceae

Nitrolancea

Sphaerobacter

Thermomicrobium

Thermorudis

Chloroflexales

Herpetosiphon {Herpetosiphonaceae}

Roseiflexaceae

"Kouleothrix"

Roseiflexus

Chloroflexaceae

Chloroflexus

Oscillochloris

"Ca. Chloroploca"

"Ca. Viridilinea"

Taxonomy

Genus "Candidatus Chlorotrichoides" corrig. Oren et al. 2020 ["Candidatus Chlorothrix" Klappenbach & Pierson 2004 non Dyar 1921 non Berger-Perrot 1982[22]]
Genus "Candidatus Nitrocaldera" Spieck et al. 2020
Genus "Candidatus Nitrotheca" Spieck et al. 2020
Class "Limnocylindria" Mehrshad et al. 2018

  • Order "Limnocylindrales" Mehrshad et al. 2018
    • Family "Limnocylindraceae" Mehrshad et al. 2018 (SL56)
      • Genus "Candidatus Aquidulcis" corrig. Rodriguez-R et al. 2020
      • Genus "Candidatus Limnocylindrus" Mehrshad et al. 2018

Class Ktedonobacteria Cavaletti et al. 2007 emend. Yabe et al. 2010

  • Order Thermogemmatisporales Yabe et al. 2011
    • Family Thermogemmatisporaceae Yabe et al. 2011
      • Genus Thermogemmatispora Yabe et al. 2011[23]
  • Order Ktedonobacterales Cavaletti et al. 2007
    • Family Dictyobacteraceae Wang et al. 2019
      • Genus Dictyobacter Yabe et al. 2017
      • Genus Tengunoibacter Wang et al. 2019
    • Family Ktedonobacteriaceae Cavaletti et al. 2007
      • Genus Ktedonobacter corrig. Cavaletti et al. 2007
      • Genus Ktedonospora Yabe et al. 2021
    • Family Ktedonosporobacteraceae Yan et al. 2020
      • Genus Ktedonosporobacter Yan et al. 2020
    • Family Reticulibacteraceae Yabe et al. 2021
      • Genus Reticulibacter Yabe et al. 2021
    • Family Thermosporotrichaceae Yabe et al. 2010
      • Genus Thermosporothrix Yabe et al. 2010[24]

Class "Umbricyclopia" Mehrshad et al. 2018

  • Order "Umbricyclopales" Mehrshad et al. 2018
    • Family "Umbricyclopaceae" Mehrshad et al. 2018
      • Genus "Candidatus Umbricyclops" Mehrshad et al. 2018 (TK10)

Class "Bathosphaeria" Mehrshad et al. 2018

  • Order "Bathosphaerales" Mehrshad et al. 2018
    • Family "Bathosphaeraceae" Mehrshad et al. 2018
      • Genus "Candidatus Bathosphaera" Mehrshad et al. 2018 (JG30-KF-CM66)

Class Tepidiformia Kochetkova et al. 2020

  • Order Tepidiformales Kochetkova et al. 2020
    • Family Tepidiformaceae Kochetkova et al. 2020
      • Genus "Tepidiforma Kochetkova et al. 2020

Class Dehalococcoidia Löffler et al. 2013

Class "Thermofontia" corrig. Ward et al. 2018

  • Order "Phototrophicales" Zheng et al. 2022
    • Family "Phototrophicaceae" Zheng et al. 2022
      • Genus "Phototrophicus" Zheng et al. 2022

Class Ardenticatenia Kawaichi et al. 2013

  • Order Ardenticatenales Kawaichi et al. 2013
    • Family Ardenticatenaceae Kawaichi et al. 2013

Class "Caldilineia" Oren, Parte & Garrity 2016 ex Cavalier-Smith 2020

  • Order Caldilineales Yamada et al. 2006
    • Family "Amarolineaceae" Andersen et al. 2019
      • Genus "Candidatus Amarolinea" Andersen et al. 2019
    • Family Caldilineaceae Yamada et al. 2006
      • Genus Caldilinea Sekiguchi et al. 2003
      • Genus Litorilinea Kale et al. 2013

Class Thermoflexia Dodsworth et al. 2014

  • Order Thermoflexales Dodsworth et al. 2014
    • Family Thermoflexaceae Dodsworth et al. 2014
      • Genus "Candidatus Roseilinea" Thiel et al. 2016
      • Genus Thermoflexus Dodsworth et al. 2014

Class "Anaerolineia" Oren, Parte & Garrity 2016

  • Family "Profundisolitariaceae" Mehrshad et al. 2018
    • Genus "Candidatus Profundisolitarius" Mehrshad et al. 2018 (CL500-11)
  • Order "Promineifilales"
    • Family "Promineifilaceae"
      • Genus "Candidatus Promineofilum" McIlroy et al. 2016
  • Order Aggregatilineales Nakahara et al. 2019
    • Family Aggregatilineaceae Nakahara et al. 2019
      • Genus Aggregatilinea Nakahara et al. 2019
  • Order Anaerolineales Yamada et al. 2006

Class Thermomicrobiia Oren, Parte & Garrity 2016

  • Order Sphaerobacterales Stackebrandt, Rainey & Ward-Rainey 1997
    • Family Sphaerobacteraceae Stackebrandt, Rainey & Ward-Rainey 1997
      • Genus Nitrolancea Sorokin et al. 2014 ["Nitrolancetus" Sorokin et al. 2012]
      • Genus Sphaerobacter Demharter et al. 1989
  • Order Thermomicrobiales Garrity & Holt 2002
    • Family Thermomicrobiaceae Garrity & Holt 2002
      • Genus Thermomicrobium Jackson, Ramaley & Meinschein 1973
      • Genus Thermorudis King & King 2014

Class Chloroflexia Gupta et al. 2013

  • Genus "Dehalobium" Wu et al. 2002[26]
  • Genus "Candidatus Lithoflexus" Saghai et al. 2020
  • Genus "Candidatus Sarcinithrix" Nierychlo et al. 2019
  • Order "Thermobaculales"
    • Family "Thermobaculaceae"
      • Genus "Thermobaculum" Botero et al. 2004
  • Order Kallotenuales Cole et al. 2013
    • Family Kallotenuaceae Cole et al. 2013
      • Genus Kallotenue Cole et al. 2013
  • Order Herpetosiphonales Gupta et al. 2013
  • Order Chloroflexales Gupta et al. 2013
    • Suborder Roseiflexineae Gupta et al. 2013
      • Family Roseiflexaceae Gupta et al. 2013 ["Kouleotrichaceae" Mehrshad et al. 2018]
        • Genus "Kouleothrix" Kohno et al. 2002
        • Genus Heliothrix Pierson et al. 1986
        • Genus Roseiflexus Hanada et al. 2002
    • Suborder Chloroflexineae Gupta et al. 2013
      • Family Chloroflexaceae Gupta et al. 2013
        • Genus Candidatus Chloranaerofilum Thiel et al. 2016
        • Genus Chloroflexus Pierson & Castenholz 1974 ["Chlorocrinis"]
      • Family Oscillochloridaceae Gupta et al. 2013
        • Genus Candidatus Chloroploca Gorlenko et al. 2014
        • Genus ChloronemaDubinina & Gorlenko 1975
        • Genus Oscillochloris Gorlenko & Pivovarova 1989
        • Genus Candidatus Viridilinea Grouzdev et al. 2018

Etymology

The name Chloroflexi is a Neolatin nominative case masculine plural of Chloroflexus, which is the name of the first genus described. The noun is a combination of the Greek adjective chloros, -a, on (χλωρός, -ά, -όν),[27] meaning "greenish-yellow," and the Latin masculine passive perfect participle flexus (of flecto),[28] meaning "bent."[6] The etymology is unrelated to chlorine, an element that was discovered in 1810 by Sir Humphry Davy and named after its pale green colour. Another phylum with the same root is Chlorobiota, whereas "Cyanobacteria" has the root cyanos (κύανος), meaning "blue-green."[29]

Unlike some other phyla, there is no theme root in the name of genera of Chloroflexota, and in fact many genera beginning with "Chloro-" or ending in "-chloris" are either cyanobacteria or chlorobi.

References

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  9. ^ a b Moe, W. M.; Yan, J.; Nobre, M. F.; Da Costa, M. S.; Rainey, F. A. (2009). "Dehalogenimonas lykanthroporepellens gen. Nov., sp. Nov., a reductively dehalogenating bacterium isolated from chlorinated solvent-contaminated groundwater". International Journal of Systematic and Evolutionary Microbiology. 59 (11): 2692–2697. doi:10.1099/ijs.0.011502-0. PMID 19625421.
  10. ^ a b c d Gupta, R. S.; Chander, P.; George, S. (2012). "Phylogenetic framework and molecular signatures for the class Chloroflexi and its different clades; proposal for division of the class Chloroflexi class. nov. into the suborder Chloroflexineae subord. nov., consisting of the emended family Oscillochloridaceae and the family Chloroflexaceae fam. nov., and the suborder Roseiflexineae subord. nov., containing the family Roseiflexaceae fam. nov". Antonie van Leeuwenhoek. 103 (1): 99–119. doi:10.1007/s10482-012-9790-3. PMID 22903492. S2CID 17656551.
  11. ^ J.P. Euzéby. "Chloroflexi". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2018-07-20.
  12. ^ Sayers; et al. "Chloroflexi". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2014-03-20.
  13. ^ "The LTP". Retrieved 23 February 2021.
  14. ^ "LTP_all tree in newick format". Retrieved 23 February 2021.
  15. ^ "LTP_12_2021 Release Notes" (PDF). Retrieved 23 February 2021.
  16. ^ "GTDB release 07-RS207". Genome Taxonomy Database. Retrieved 20 June 2022.
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  18. ^ "Taxon History". Genome Taxonomy Database. Retrieved 20 June 2022.
  19. ^ a b c d e Yamada, T.; Sekiguchi, Y.; Hanada, S.; Imachi, H.; Ohashi, A.; Harada, H.; Kamagata, Y. (2006). "Anaerolinea thermolimosa sp. nov., Levilinea saccharolytica gen. nov., sp. nov. And Leptolinea tardivitalis gen. nov., sp. nov., novel filamentous anaerobes, and description of the new classes Anaerolineae classis nov. and Caldilineae classis nov. in the bacterial phylum Chloroflexi". International Journal of Systematic and Evolutionary Microbiology. 56 (6): 1331–1340. doi:10.1099/ijs.0.64169-0. PMID 16738111.
  20. ^ Sekiguchi, Y.; Yamada, T.; Hanada, S.; Ohashi, A.; Harada, H.; Kamagata, Y. (2003). "Anaerolinea thermophila gen. nov., sp. nov. And Caldilinea aerophila gen. nov., sp. nov., novel filamentous thermophiles that represent a previously uncultured lineage of the domain Bacteria at the subphylum level". International Journal of Systematic and Evolutionary Microbiology. 53 (6): 1843–1851. doi:10.1099/ijs.0.02699-0. PMID 14657113.
  21. ^ a b c Yamada, T.; Imachi, H.; Ohashi, A.; Harada, H.; Hanada, S.; Kamagata, Y.; Sekiguchi, Y. (2007). "Bellilinea caldifistulae gen. nov., sp. nov. And Longilinea arvoryzae gen. nov., sp. nov., strictly anaerobic, filamentous bacteria of the phylum Chloroflexi isolated from methanogenic propionate-degrading consortia". International Journal of Systematic and Evolutionary Microbiology. 57 (10): 2299–2306. doi:10.1099/ijs.0.65098-0. PMID 17911301.
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  27. ^ χλωρός. Liddell, Henry George; Scott, Robert; A Greek–English Lexicon at the Perseus Project
  28. ^ Lewis & Short...
  29. ^ κύανος. Liddell, Henry George; Scott, Robert; A Greek–English Lexicon at the Perseus Project

chloroflexota, phylum, bacteria, containing, isolates, with, diversity, phenotypes, including, members, that, aerobic, thermophiles, which, oxygen, grow, well, high, temperatures, anoxygenic, phototrophs, which, light, photosynthesis, green, sulfur, bacteria, . The Chloroflexota are a phylum of bacteria containing isolates with a diversity of phenotypes including members that are aerobic thermophiles which use oxygen and grow well in high temperatures anoxygenic phototrophs which use light for photosynthesis green non sulfur bacteria and anaerobic halorespirers which uses halogenated organics such as the toxic chlorinated ethenes and polychlorinated biphenyls as electron acceptors ChloroflexotaScientific classificationDomain BacteriaClade TerrabacteriaPhylum ChloroflexotaGarrity and Holt 2021 1 ClassesAnaerolineae Ardenticatenia Bathosphaeria Caldilineae Chloroflexia Dehalococcoidia Ktedonobacteria Limnocylindria Tepidiformia Thermoflexia Thermomicrobiia UmbricyclopiaSynonyms Chlorobacteria Cavalier Smith 2006 Chloroflexi Garrity and Holt 2001 Eobacteria Cavalier Smith 2002 Chloroflexota Whitman et al 2018 Chloroflexaeota Oren et al 2015 Thermomicrobiota Oren amp Garrity 2021The members of the phylum Chloroflexota are monoderms that is have one cell membrane with no outer membrane but they stain mostly gram negative 2 Many well studied phyla of bacteria are diderms and stain gram negative whereas well known monoderms that stain Gram positive include Firmicutes or Bacillota low G C gram positives Actinomycetota high G C gram positives and Deinococcota gram positive diderms with thick peptidoglycan Contents 1 History 2 Phylogeny 3 Taxonomy 4 Etymology 5 ReferencesHistory EditSee also Bacterial taxonomy and Bacterial phyla The taxon name was created in the 2001 edition of Volume 1 of Bergey s Manual of Systematic Bacteriology and is the Latin plural of the name Chloroflexus the name of the type genus of the phylum a common practice 3 In 1987 Carl Woese regarded as one of the forerunner of the molecular phylogeny revolution divided Eubacteria into 11 divisions based on 16S ribosomal RNA SSU sequences and grouped the genera Chloroflexus Herpetosiphon and Thermomicrobium into the green non sulfur bacteria and relatives 4 5 which was temporarily renamed as Chloroflexi in Volume One of Bergey s Manual of Systematic Bacteriology 6 Chloroflexota being a deep branching phylum see Bacterial phyla it was considered in Volume One of Bergey s Manual of Systematic Bacteriology to include a single class with the same name 6 Since 2001 however new classes have been created thanks to newly discovered species and the phylum Chloroflexi is now divided into several classes Dehalococcoidetes is a placeholder name given by Hugenholtz amp Stackebrandt 2004 7 after Dehalococcoides ethenogenes a species partially described in 1997 8 The first species fully described was Dehalogenimonas lykanthroporepellens by Moe et al 2009 9 but in the description of that species the class was not made official nor were families or orders laid out as the two species share only 90 16S ribosomal RNA identity meaning that they could fall in different families or even orders 9 Recent phylogenetic analysis of the Chloroflexota has found very weak support for the grouping together of the different classes currently part of the phylum 10 The six classes that make up the phylum did not consistently form a well supported clade in phylogenetic trees based on concatenated sequences for large datasets of proteins and no conserved signature indels were identified that were uniquely shared by the entire phylum 10 However the classes Chloroflexi and Thermomicrobia were found to group together consistently by both the usual phylogenetic means and the identification of shared conserved signature indels in the 50S ribosomal protein L19 and the enzyme UDP glucose 4 epimerase 10 It has been suggested that the phylum Chloroflexi sensu stricto should comprise only the classes Chloroflexi and Thermomicrobia and the other four classes Dehalococcoidetes Anaerolineae Caldilineae and Ktedonobacteria may represent one or more independent phyla branching in the neighborhood of the Chloroflexi 10 Phylogeny EditThe currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature LPSN 11 and National Center for Biotechnology Information NCBI 12 16S rRNA based LTP 12 2021 13 14 15 120 marker proteins based GTDB 07 RS207 16 17 18 Tepidiformia Tepidiformales Tepidiformaceae TepidiformaDehalococcoidia Dehalococcoidales Dehalococcoidaceae DehalococcoidesDehalogenimonas Caldilineia Caldilineales Caldilineaceae LitorilineaCaldilineaArdenticatenia Ardenticatenales Ardenticatenaceae Ardenticatena Anaerolineia Anaerolineales Anaerolineaceae AggregatilineaThermomarinilineaAnaerolinea 19 20 FlexilineaPelolineaBellilineaLeptolinea 19 Longilinea 21 Levilinea 19 OrnatilineaKtedonobacteria Thermogemmatisporales Thermogemmatispora Thermogemmatisporaceae Ktedonobacteriales Thermosporothrix Thermosporotrichaceae Ktedonobacter Ktedonobacteraceae Ktedonosporobacter Ktedonosporobacteraceae Reticulibacteraceae ReticulibacterDictyobacteraceae TengunoibacterDictyobacterThermoflexus Thermoflexia Thermoflexales Thermoflexaceae Thermomicrobiia Sphaerobacterales Sphaerobacteraceae NitrolanceaSphaerobacterThermomicrobiales Thermomicrobiaceae ThermomicrobiumThermorudisChloroflexia Kallotenue Kallotenuales Kallotenuaceae Herpetosiphonales Herpetosiphonaceae HerpetosiphonChloroflexales Roseiflexaceae RoseiflexusChloroflexaceae HeliothrixOscillochlorisChloroflexus Ca Limnocylindrus Limnocylindria Limnocylindrales Limnocylindraceae Ktedonobacteria Ktedonobacteriales Ktedonobacteriaceae ThermogemmatisporaKtedonosporobacterKtedonobacterThermosporothrixTengunoibacterDictyobacterDehalococcoidia Tepidiformales Tepidiformaceae TepidiformaDehalococcoidales Dehalococcoidaceae DehalococcoidesDehalogenimonas Caldilineia Ardenticatena Ardenticatenales Ardenticatenaceae Caldilineidae Caldilineales Caldilineaceae CaldilineaLitorilinea Anaerolineidae Thermoflexales Thermoflexaceae Ca Roseilinea Thermoflexus Ca Promineifilum Promineofilales Promineofilaceae Aggregatilineales Aggregatilineaceae AggregatilineaAnaerolineales EnvOPS12 Candidatus Denitrolinea Desulfolinea Anaerolineaceae Flexilinea Brevefilum PelolineaOrnatilineaLeptolineaLevilineaLongilineaAnaerolineaBellilinea Thermanaerothrix Chloroflexia Thermobaculales Thermobaculaceae ThermobaculumThermomicrobiales Thermomicrobiaceae NitrolanceaSphaerobacterThermomicrobiumThermorudisChloroflexales Herpetosiphon Herpetosiphonaceae Roseiflexaceae Kouleothrix RoseiflexusChloroflexaceae ChloroflexusOscillochloris Ca Chloroploca Ca Viridilinea Taxonomy EditGenus Candidatus Chlorotrichoides corrig Oren et al 2020 Candidatus Chlorothrix Klappenbach amp Pierson 2004 non Dyar 1921 non Berger Perrot 1982 22 Genus Candidatus Nitrocaldera Spieck et al 2020 Genus Candidatus Nitrotheca Spieck et al 2020 Class Limnocylindria Mehrshad et al 2018 Order Limnocylindrales Mehrshad et al 2018 Family Limnocylindraceae Mehrshad et al 2018 SL56 Genus Candidatus Aquidulcis corrig Rodriguez R et al 2020 Genus Candidatus Limnocylindrus Mehrshad et al 2018Class Ktedonobacteria Cavaletti et al 2007 emend Yabe et al 2010 Order Thermogemmatisporales Yabe et al 2011 Family Thermogemmatisporaceae Yabe et al 2011 Genus Thermogemmatispora Yabe et al 2011 23 Order Ktedonobacterales Cavaletti et al 2007 Family Dictyobacteraceae Wang et al 2019 Genus Dictyobacter Yabe et al 2017 Genus Tengunoibacter Wang et al 2019 Family Ktedonobacteriaceae Cavaletti et al 2007 Genus Ktedonobacter corrig Cavaletti et al 2007 Genus Ktedonospora Yabe et al 2021 Family Ktedonosporobacteraceae Yan et al 2020 Genus Ktedonosporobacter Yan et al 2020 Family Reticulibacteraceae Yabe et al 2021 Genus Reticulibacter Yabe et al 2021 Family Thermosporotrichaceae Yabe et al 2010 Genus Thermosporothrix Yabe et al 2010 24 Class Umbricyclopia Mehrshad et al 2018 Order Umbricyclopales Mehrshad et al 2018 Family Umbricyclopaceae Mehrshad et al 2018 Genus Candidatus Umbricyclops Mehrshad et al 2018 TK10 Class Bathosphaeria Mehrshad et al 2018 Order Bathosphaerales Mehrshad et al 2018 Family Bathosphaeraceae Mehrshad et al 2018 Genus Candidatus Bathosphaera Mehrshad et al 2018 JG30 KF CM66 Class Tepidiformia Kochetkova et al 2020 Order Tepidiformales Kochetkova et al 2020 Family Tepidiformaceae Kochetkova et al 2020 Genus Tepidiforma Kochetkova et al 2020Class Dehalococcoidia Loffler et al 2013 Order Dehalococcoidales Loffler et al 2013 Family Dehalococcoidaceae Loffler et al 2013 Genus Dehalococcoides Loffler et al 2013 Genus Dehalogenimonas Moe et al 2009Class Thermofontia corrig Ward et al 2018 Order Phototrophicales Zheng et al 2022 Family Phototrophicaceae Zheng et al 2022 Genus Phototrophicus Zheng et al 2022Class Ardenticatenia Kawaichi et al 2013 Order Ardenticatenales Kawaichi et al 2013 Family Ardenticatenaceae Kawaichi et al 2013 Genus Ardenticatena Kawaichi et al 2013Class Caldilineia Oren Parte amp Garrity 2016 ex Cavalier Smith 2020 Order Caldilineales Yamada et al 2006 Family Amarolineaceae Andersen et al 2019 Genus Candidatus Amarolinea Andersen et al 2019 Family Caldilineaceae Yamada et al 2006 Genus Caldilinea Sekiguchi et al 2003 Genus Litorilinea Kale et al 2013Class Thermoflexia Dodsworth et al 2014 Order Thermoflexales Dodsworth et al 2014 Family Thermoflexaceae Dodsworth et al 2014 Genus Candidatus Roseilinea Thiel et al 2016 Genus Thermoflexus Dodsworth et al 2014Class Anaerolineia Oren Parte amp Garrity 2016 Family Profundisolitariaceae Mehrshad et al 2018 Genus Candidatus Profundisolitarius Mehrshad et al 2018 CL500 11 Order Promineifilales Family Promineifilaceae Genus Candidatus Promineofilum McIlroy et al 2016 Order Aggregatilineales Nakahara et al 2019 Family Aggregatilineaceae Nakahara et al 2019 Genus Aggregatilinea Nakahara et al 2019 Order Anaerolineales Yamada et al 2006 Family Anaerolineaceae Yamada et al 2006 Genus Anaerolinea Sekiguchi et al 2003 emend Yamada et al 2006 Genus Bellilinea Yamada et al 2007 21 Genus Brevefilum McIlroy et al 2017 Genus Candidatus Denitrolinea Okubo et al 2021 Genus Desulfolinea Van Vliet et al 2020 Genus Flexilinea Sun et al 2015 Genus Levilinea Yamada et al 2006 19 Genus Leptolinea Yamada et al 2006 19 Genus Longilinea Yamada et al 2007 21 Genus Ornatilinea Podosokorskaya et al 2013 Genus Pelolinea Imachi et al 2014 Genus Thermomarinilinea Nunoura et al 2013 Genus Thermanaerothrix Gregoire et al 2011 25 Genus Candidatus VilligracilisNierychlo et al 2019Class Thermomicrobiia Oren Parte amp Garrity 2016 Order Sphaerobacterales Stackebrandt Rainey amp Ward Rainey 1997 Family Sphaerobacteraceae Stackebrandt Rainey amp Ward Rainey 1997 Genus Nitrolancea Sorokin et al 2014 Nitrolancetus Sorokin et al 2012 Genus Sphaerobacter Demharter et al 1989 Order Thermomicrobiales Garrity amp Holt 2002 Family Thermomicrobiaceae Garrity amp Holt 2002 Genus Thermomicrobium Jackson Ramaley amp Meinschein 1973 Genus Thermorudis King amp King 2014Class Chloroflexia Gupta et al 2013 Genus Dehalobium Wu et al 2002 26 Genus Candidatus Lithoflexus Saghai et al 2020 Genus Candidatus Sarcinithrix Nierychlo et al 2019 Order Thermobaculales Family Thermobaculaceae Genus Thermobaculum Botero et al 2004 Order Kallotenuales Cole et al 2013 Family Kallotenuaceae Cole et al 2013 Genus Kallotenue Cole et al 2013 Order Herpetosiphonales Gupta et al 2013 Family Herpetosiphonaceae Gupta et al 2013 Genus Candidatus Anthektikosiphon Ward Fischer amp McGlynn 2020 Genus Herpetosiphon Holt amp Lewin 1968 Flavilitoribacter Garcia Lopez et al 2020 Order Chloroflexales Gupta et al 2013 Suborder Roseiflexineae Gupta et al 2013 Family Roseiflexaceae Gupta et al 2013 Kouleotrichaceae Mehrshad et al 2018 Genus Kouleothrix Kohno et al 2002 Genus Heliothrix Pierson et al 1986 Genus Roseiflexus Hanada et al 2002 Suborder Chloroflexineae Gupta et al 2013 Family Chloroflexaceae Gupta et al 2013 Genus Candidatus Chloranaerofilum Thiel et al 2016 Genus Chloroflexus Pierson amp Castenholz 1974 Chlorocrinis Family Oscillochloridaceae Gupta et al 2013 Genus Candidatus Chloroploca Gorlenko et al 2014 Genus Chloronema Dubinina amp Gorlenko 1975 Genus Oscillochloris Gorlenko amp Pivovarova 1989 Genus Candidatus Viridilinea Grouzdev et al 2018Etymology EditThe name Chloroflexi is a Neolatin nominative case masculine plural of Chloroflexus which is the name of the first genus described The noun is a combination of the Greek adjective chloros a on xlwros a on 27 meaning greenish yellow and the Latin masculine passive perfect participle flexus of flecto 28 meaning bent 6 The etymology is unrelated to chlorine an element that was discovered in 1810 by Sir Humphry Davy and named after its pale green colour Another phylum with the same root is Chlorobiota whereas Cyanobacteria has the root cyanos kyanos meaning blue green 29 Unlike some other phyla there is no theme root in the name of genera of Chloroflexota and in fact many genera beginning with Chloro or ending in chloris are either cyanobacteria or chlorobi References Edit Oren A Garrity GM 2021 Valid publication of the names of forty two phyla of prokaryotes Int J Syst Evol Microbiol 71 10 5056 doi 10 1099 ijsem 0 005056 PMID 34694987 S2CID 239887308 Sutcliffe I C 2010 A phylum level perspective on bacterial cell envelope architecture Trends in Microbiology 18 10 464 470 doi 10 1016 j tim 2010 06 005 PMID 20637628 Don J Brenner Noel R Krieg James T Staley July 26 2005 1984 Williams amp Wilkins George M Garrity ed Introductory Essays Bergey s Manual of Systematic Bacteriology Vol 2A 2nd ed New York Springer p 304 ISBN 978 0 387 24143 2 British Library no GBA561951 Holland L 22 May 1990 Woese Carl in the forefront of bacterial evolution revolution Scientist 4 10 Woese C R 1987 Bacterial evolution Microbiological Reviews 51 2 221 271 doi 10 1128 MMBR 51 2 221 271 1987 PMC 373105 PMID 2439888 a b c Don J Brenner Noel R Krieg James T Staley July 26 2005 1984 Williams amp Wilkins George M Garrity ed Introductory Essays Bergey s Manual of Systematic Bacteriology Vol 2A 2nd ed New York Springer p 304 ISBN 978 0 387 24143 2 British Library no GBA561951 Hugenholtz P Stackebrandt E 2004 Reclassification of Sphaerobacter thermophilus from the subclass Sphaerobacteridae in the phylum Actinobacteria to the class Thermomicrobia emended description in the phylum Chloroflexi emended description International Journal of Systematic and Evolutionary Microbiology 54 6 2049 2051 doi 10 1099 ijs 0 03028 0 PMID 15545432 Maymo Gatell X Chien Y Gossett J M Zinder S H 1997 Isolation of a Bacterium That Reductively Dechlorinates Tetrachloroethene to Ethene Science 276 5318 1568 1571 doi 10 1126 science 276 5318 1568 PMID 9171062 a b Moe W M Yan J Nobre M F Da Costa M S Rainey F A 2009 Dehalogenimonas lykanthroporepellens gen Nov sp Nov a reductively dehalogenating bacterium isolated from chlorinated solvent contaminated groundwater International Journal of Systematic and Evolutionary Microbiology 59 11 2692 2697 doi 10 1099 ijs 0 011502 0 PMID 19625421 a b c d Gupta R S Chander P George S 2012 Phylogenetic framework and molecular signatures for the class Chloroflexi and its different clades proposal for division of the class Chloroflexi class nov into the suborder Chloroflexineae subord nov consisting of the emended family Oscillochloridaceae and the family Chloroflexaceae fam nov and the suborder Roseiflexineae subord nov containing the family Roseiflexaceae fam nov Antonie van Leeuwenhoek 103 1 99 119 doi 10 1007 s10482 012 9790 3 PMID 22903492 S2CID 17656551 J P Euzeby Chloroflexi List of Prokaryotic names with Standing in Nomenclature LPSN Retrieved 2018 07 20 Sayers et al Chloroflexi National Center for Biotechnology Information NCBI taxonomy database Retrieved 2014 03 20 The LTP Retrieved 23 February 2021 LTP all tree in newick format Retrieved 23 February 2021 LTP 12 2021 Release Notes PDF Retrieved 23 February 2021 GTDB release 07 RS207 Genome Taxonomy Database Retrieved 20 June 2022 bac120 r207 sp labels Genome Taxonomy Database Retrieved 20 June 2022 Taxon History Genome Taxonomy Database Retrieved 20 June 2022 a b c d e Yamada T Sekiguchi Y Hanada S Imachi H Ohashi A Harada H Kamagata Y 2006 Anaerolinea thermolimosa sp nov Levilinea saccharolytica gen nov sp nov And Leptolinea tardivitalis gen nov sp nov novel filamentous anaerobes and description of the new classes Anaerolineae classis nov and Caldilineae classis nov in the bacterial phylum Chloroflexi International Journal of Systematic and Evolutionary Microbiology 56 6 1331 1340 doi 10 1099 ijs 0 64169 0 PMID 16738111 Sekiguchi Y Yamada T Hanada S Ohashi A Harada H Kamagata Y 2003 Anaerolinea thermophila gen nov sp nov And Caldilinea aerophila gen nov sp nov novel filamentous thermophiles that represent a previously uncultured lineage of the domain Bacteria at the subphylum level International Journal of Systematic and Evolutionary Microbiology 53 6 1843 1851 doi 10 1099 ijs 0 02699 0 PMID 14657113 a b c Yamada T Imachi H Ohashi A Harada H Hanada S Kamagata Y Sekiguchi Y 2007 Bellilinea caldifistulae gen nov sp nov And Longilinea arvoryzae gen nov sp nov strictly anaerobic filamentous bacteria of the phylum Chloroflexi isolated from methanogenic propionate degrading consortia International Journal of Systematic and Evolutionary Microbiology 57 10 2299 2306 doi 10 1099 ijs 0 65098 0 PMID 17911301 Klappenbach J A Pierson B K 2004 Phylogenetic and physiological characterization of a filamentous anoxygenic photoautotrophic bacterium Candidatus Chlorothrix halophila Gen Nov sp Nov recovered from hypersaline microbial mats Archives of Microbiology 181 1 17 25 doi 10 1007 s00203 003 0615 7 PMID 14655000 S2CID 23854988 Yabe S Aiba Y Sakai Y Hazaka M Yokota A 2010 Thermogemmatispora onikobensis gen nov sp nov And Thermogemmatispora foliorum sp nov isolated from fallen leaves on geothermal soils and description of Thermogemmatisporaceae fam Nov And Thermogemmatisporales ord Nov Within the class Ktedonobacteria International Journal of Systematic and Evolutionary Microbiology 61 4 903 910 doi 10 1099 ijs 0 024877 0 PMID 20495028 Yabe S Aiba Y Sakai Y Hazaka M Yokota A 2009 Thermosporothrix hazakensis gen nov sp nov isolated from compost description of Thermosporotrichaceae fam Nov Within the class Ktedonobacteria Cavaletti et al 2007 and emended description of the class Ktedonobacteria International Journal of Systematic and Evolutionary Microbiology 60 8 1794 1801 doi 10 1099 ijs 0 018069 0 PMID 19767365 Gregoire P Fardeau M L Joseph M Guasco S Hamaide F Biasutti S Michotey V R Bonin P Ollivier B 2011 Isolation and characterization of Thermanaerothrix daxensis gen nov sp nov a thermophilic anaerobic bacterium pertaining to the phylum Chloroflexi isolated from a deep hot aquifer in the Aquitaine Basin Systematic and Applied Microbiology 34 7 494 497 doi 10 1016 j syapm 2011 02 004 PMID 21621938 Wu Q Watts J E M Sowers K R May H D 2002 Identification of a Bacterium That Specifically Catalyzes the Reductive Dechlorination of Polychlorinated Biphenyls with Doubly Flanked Chlorines Applied and Environmental Microbiology 68 2 807 812 Bibcode 2002ApEnM 68 807W doi 10 1128 AEM 68 2 807 812 2002 PMC 126686 PMID 11823222 xlwros Liddell Henry George Scott Robert A Greek English Lexicon at the Perseus Project Lewis amp Short kyanos Liddell Henry George Scott Robert A Greek English Lexicon at the Perseus Project Retrieved from https en wikipedia org w index php title Chloroflexota amp oldid 1136282694, wikipedia, wiki, book, books, library,

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