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Endoplasmic reticulum

The endoplasmic reticulum (ER) is, in essence, the transportation system of the eukaryotic cell, and has many other important functions such as protein folding. It is a type of organelle made up of two subunits – rough endoplasmic reticulum (RER), and smooth endoplasmic reticulum (SER). The endoplasmic reticulum is found in most eukaryotic cells and forms an interconnected network of flattened, membrane-enclosed sacs known as cisternae (in the RER), and tubular structures in the SER. The membranes of the ER are continuous with the outer nuclear membrane. The endoplasmic reticulum is not found in red blood cells, or spermatozoa.

Micrograph of rough endoplasmic reticulum network around the nucleus (shown in the lower right-hand area of the picture). Dark small circles in the network are mitochondria.

The two types of ER share many of the same proteins and engage in certain common activities such as the synthesis of certain lipids and cholesterol. Different types of cells contain different ratios of the two types of ER depending on the activities of the cell. RER is found mainly toward the nucleus of cell and SER towards the cell membrane or plasma membrane of cell.

The outer (cytosolic) face of the RER is studded with ribosomes that are the sites of protein synthesis. The RER is especially prominent in cells such as hepatocytes. The SER lacks ribosomes and functions in lipid synthesis but not metabolism, the production of steroid hormones, and detoxification.[1] The SER is especially abundant in mammalian liver and gonad cells.

The ER was observed by light microscopy by Garnier in 1897, who coined the term ergastoplasm.[2][3] The lacy membranes of the endoplasmic reticulum were first seen by electron microscopy in 1945 by Keith R. Porter, Albert Claude, and Ernest F. Fullam.[4] Later, the word reticulum, which means "network", was applied by Porter in 1953 to describe this fabric of membranes.[5]

Structure edit

 
1 Nucleus   2 Nuclear pore   3 Rough endoplasmic reticulum (RER)   4 Smooth endoplasmic reticulum (SER)   5 Ribosome on the rough ER   6 Proteins that are transported   7 Transport vesicle   8 Golgi apparatus   9 Cis face of the Golgi apparatus   10 Trans face of the Golgi apparatus   11 Cisternae of the Golgi apparatus
 
3D rendering of endoplasmic reticulum

The general structure of the endoplasmic reticulum is a network of membranes called cisternae. These sac-like structures are held together by the cytoskeleton. The phospholipid membrane encloses the cisternal space (or lumen), which is continuous with the perinuclear space but separate from the cytosol. The functions of the endoplasmic reticulum can be summarized as the synthesis and export of proteins and membrane lipids, but varies between ER and cell type and cell function. The quantity of both rough and smooth endoplasmic reticulum in a cell can slowly interchange from one type to the other, depending on the changing metabolic activities of the cell. Transformation can include embedding of new proteins in membrane as well as structural changes. Changes in protein content may occur without noticeable structural changes.[6][7]

Rough endoplasmic reticulum edit

 
A 2-minute animation showing how a protein destined for the secretory pathway is synthesized and secreted into the rough endoplasmic reticulum, which appears at the upper right approximately halfway through the animation.

The surface of the rough endoplasmic reticulum (often abbreviated RER or rough ER; also called granular endoplasmic reticulum) is studded with protein-manufacturing ribosomes giving it a "rough" appearance (hence its name).[8] The binding site of the ribosome on the rough endoplasmic reticulum is the translocon.[9] However, the ribosomes are not a stable part of this organelle's structure as they are constantly being bound and released from the membrane. A ribosome only binds to the RER once a specific protein-nucleic acid complex forms in the cytosol. This special complex forms when a free ribosome begins translating the mRNA of a protein destined for the secretory pathway.[10] The first 5–30 amino acids polymerized encode a signal peptide, a molecular message that is recognized and bound by a signal recognition particle (SRP). Translation pauses and the ribosome complex binds to the RER translocon where translation continues with the nascent (new) protein forming into the RER lumen and/or membrane. The protein is processed in the ER lumen by an enzyme (a signal peptidase), which removes the signal peptide. Ribosomes at this point may be released back into the cytosol; however, non-translating ribosomes are also known to stay associated with translocons.[11]

The membrane of the rough endoplasmic reticulum is in the form of large double-membrane sheets that are located near, and continuous with, the outer layer of the nuclear envelope.[12] The double membrane sheets are stacked and connected through several right- or left-handed helical ramps, the "Terasaki ramps", giving rise to a structure resembling a parking garage.[13][14] Although there is no continuous membrane between the endoplasmic reticulum and the Golgi apparatus, membrane-bound transport vesicles shuttle proteins between these two compartments.[15] Vesicles are surrounded by coating proteins called COPI and COPII. COPII targets vesicles to the Golgi apparatus and COPI marks them to be brought back to the rough endoplasmic reticulum. The rough endoplasmic reticulum works in concert with the Golgi complex to target new proteins to their proper destinations. The second method of transport out of the endoplasmic reticulum involves areas called membrane contact sites, where the membranes of the endoplasmic reticulum and other organelles are held closely together, allowing the transfer of lipids and other small molecules.[16][17]

The rough endoplasmic reticulum is key in multiple functions:[citation needed]

  • Manufacture of lysosomal enzymes with a mannose-6-phosphate marker added in the cis-Golgi network.[citation needed]
  • Manufacture of secreted proteins, either secreted constitutively with no tag or secreted in a regulatory manner involving clathrin and paired basic amino acids in the signal peptide.
  • Integral membrane proteins that stay embedded in the membrane as vesicles exit and bind to new membranes. Rab proteins are key in targeting the membrane; SNAP and SNARE proteins are key in the fusion event.
  • Initial glycosylation as assembly continues. This is N-linked (O-linking occurs in the Golgi).
    • N-linked glycosylation: If the protein is properly folded, oligosaccharyltransferase recognizes the AA sequence NXS or NXT (with the S/T residue phosphorylated) and adds a 14-sugar backbone (2-N-acetylglucosamine, 9-branching mannose, and 3-glucose at the end) to the side-chain nitrogen of Asn.

Smooth endoplasmic reticulum edit

 
Electron micrograph showing smooth ER (arrow) in mouse tissue, at 110,510× magnification.

In most cells the smooth endoplasmic reticulum (abbreviated SER) is scarce. Instead there are areas where the ER is partly smooth and partly rough, this area is called the transitional ER. The transitional ER gets its name because it contains ER exit sites. These are areas where the transport vesicles that contain lipids and proteins made in the ER, detach from the ER and start moving to the Golgi apparatus. Specialized cells can have a lot of smooth endoplasmic reticulum and in these cells the smooth ER has many functions.[6] It synthesizes lipids, phospholipids,[18][19][20] and steroids. Cells which secrete these products, such as those in the testes, ovaries, and sebaceous glands have an abundance of smooth endoplasmic reticulum.[21] It also carries out the metabolism of carbohydrates, detoxification of natural metabolism products and of alcohol and drugs, attachment of receptors on cell membrane proteins, and steroid metabolism.[22] In muscle cells, it regulates calcium ion concentration. Smooth endoplasmic reticulum is found in a variety of cell types (both animal and plant), and it serves different functions in each. The smooth endoplasmic reticulum also contains the enzyme glucose-6-phosphatase, which converts glucose-6-phosphate to glucose, a step in gluconeogenesis. It is connected to the nuclear envelope and consists of tubules that are located near the cell periphery. These tubes sometimes branch forming a network that is reticular in appearance.[12] In some cells, there are dilated areas like the sacs of rough endoplasmic reticulum. The network of smooth endoplasmic reticulum allows for an increased surface area to be devoted to the action or storage of key enzymes and the products of these enzymes.[citation needed]

Sarcoplasmic reticulum edit

 
Skeletal muscle fiber, with sarcoplasmic reticulum colored in blue.

The sarcoplasmic reticulum (SR), from the Greek σάρξ sarx ("flesh"), is smooth ER found in muscle cells. The only structural difference between this organelle and the smooth endoplasmic reticulum is the composition of proteins they have, both bound to their membranes and drifting within the confines of their lumens. This fundamental difference is indicative of their functions: The endoplasmic reticulum synthesizes molecules, while the sarcoplasmic reticulum stores calcium ions and pumps them out into the sarcoplasm when the muscle fiber is stimulated.[23][24] After their release from the sarcoplasmic reticulum, calcium ions interact with contractile proteins that utilize ATP to shorten the muscle fiber. The sarcoplasmic reticulum plays a major role in excitation-contraction coupling.[25]

Functions edit

The endoplasmic reticulum serves many general functions, including the folding of protein molecules in sacs called cisternae and the transport of synthesized proteins in vesicles to the Golgi apparatus. Rough endoplasmic reticulum is also involved in protein synthesis. Correct folding of newly made proteins is made possible by several endoplasmic reticulum chaperone proteins, including protein disulfide isomerase (PDI), ERp29, the Hsp70 family member BiP/Grp78, calnexin, calreticulin, and the peptidylprolyl isomerase family. Only properly folded proteins are transported from the rough ER to the Golgi apparatus – unfolded proteins cause an unfolded protein response as a stress response in the ER. Disturbances in redox regulation, calcium regulation, glucose deprivation, and viral infection[26] or the over-expression of proteins[27] can lead to endoplasmic reticulum stress response (ER stress), a state in which the folding of proteins slows, leading to an increase in unfolded proteins. This stress is emerging as a potential cause of damage in hypoxia/ischemia, insulin resistance, and other disorders.[28]

Protein transport edit

Secretory proteins, mostly glycoproteins, are moved across the endoplasmic reticulum membrane. Proteins that are transported by the endoplasmic reticulum throughout the cell are marked with an address tag called a signal sequence. The N-terminus (one end) of a polypeptide chain (i.e., a protein) contains a few amino acids that work as an address tag, which are removed when the polypeptide reaches its destination. Nascent peptides reach the ER via the translocon, a membrane-embedded multiprotein complex. Proteins that are destined for places outside the endoplasmic reticulum are packed into transport vesicles and moved along the cytoskeleton toward their destination. In human fibroblasts, the ER is always co-distributed with microtubules and the depolymerisation of the latter cause its co-aggregation with mitochondria, which are also associated with the ER.[29]

The endoplasmic reticulum is also part of a protein sorting pathway. It is, in essence, the transportation system of the eukaryotic cell. The majority of its resident proteins are retained within it through a retention motif. This motif is composed of four amino acids at the end of the protein sequence. The most common retention sequences are KDEL for lumen located proteins and KKXX for transmembrane protein.[30] However, variations of KDEL and KKXX do occur, and other sequences can also give rise to endoplasmic reticulum retention. It is not known whether such variation can lead to sub-ER localizations. There are three KDEL (1, 2 and 3) receptors in mammalian cells, and they have a very high degree of sequence identity. The functional differences between these receptors remain to be established.[31]

Bioenergetics regulation of ER ATP supply by a CaATiER mechanism edit

 
Ca2+-antagonized transport into the endoplasmic reticulum (CaATiER) model

The endoplasmic reticulum does not harbor an ATP-regeneration machinery, and therefore requires ATP import from mitochondria. The imported ATP is vital for the ER to carry out its house keeping cellular functions, such as for protein folding and trafficking.[32]

The ER ATP transporter, SLC35B1/AXER, was recently cloned and characterized,[33] and the mitochondria supply ATP to the ER through a Ca2+-antagonized transport into the ER (CaATiER) mechanism.[34] The CaATiER mechanism shows sensitivity to cytosolic Ca2+ ranging from high nM to low μM range, with the Ca2+-sensing element yet to be identified and validated.[citation needed]

Clinical significance edit

Increased and supraphysiological ER stress in pancreatic β cells disrupts normal insulin secretion, leading to hyperinsulinemia[35] and consequently peripheral insulin resistance associated with obesity in humans.[36] Human clinical trials also suggested a causal link between obesity-induced increase in insulin secretion and peripheral insulin resistance.[37]

Abnormalities in XBP1 lead to a heightened endoplasmic reticulum stress response and subsequently causes a higher susceptibility for inflammatory processes that may even contribute to Alzheimer's disease.[38] In the colon, XBP1 anomalies have been linked to the inflammatory bowel diseases including Crohn's disease.[39]

The unfolded protein response (UPR) is a cellular stress response related to the endoplasmic reticulum.[40] The UPR is activated in response to an accumulation of unfolded or misfolded proteins in the lumen of the endoplasmic reticulum. The UPR functions to restore normal function of the cell by halting protein translation, degrading misfolded proteins, and activating the signaling pathways that lead to increasing the production of molecular chaperones involved in protein folding. Sustained overactivation of the UPR has been implicated in prion diseases as well as several other neurodegenerative diseases and the inhibition of the UPR could become a treatment for those diseases.[41]

References edit

  1. ^ "Endoplasmic Reticulum (Rough and Smooth)". British Society of Cell Biology. from the original on 24 November 2015. Retrieved 21 November 2015.
  2. ^ Garnier, C. (1897). "Les filaments basaux des cellules glandulaires. Note préliminaire". Bibliographie Anatomique. 5: 278–289. OCLC 493441682.
  3. ^ Buvat, R. (1963). "Electron Microscopy of Plant Protoplasm". International Review of Cytology Volume 14. International Review of Cytology. Vol. 14. pp. 41–155. doi:10.1016/S0074-7696(08)60021-2. ISBN 978-0-12-364314-8. PMID 14283576.
  4. ^ Porter KR, Claude A, Fullam EF (March 1945). "A study of tissue culture cells by electron microscopy: methods and preliminary observations". The Journal of Experimental Medicine. 81 (3): 233–46. doi:10.1084/jem.81.3.233. PMC 2135493. PMID 19871454.
  5. ^ PORTER KR (May 1953). "Observations on a submicroscopic basophilic component of cytoplasm". The Journal of Experimental Medicine. 97 (5): 727–50. doi:10.1084/jem.97.5.727. PMC 2136295. PMID 13052830.
  6. ^ a b Alberts B, Johnson A, Lewis J, Raff M, Roberts K, Walter P (2002). Molecular biology of the cell (4th ed.). New York: Garland Science. ISBN 978-0-8153-3218-3. from the original on 2017-10-03.
  7. ^ Cooper GM (2000). The cell: a molecular approach (2nd ed.). Washington (DC): ASM Press. ISBN 978-0-87893-106-4.
  8. ^ "reticulum". The Free Dictionary.
  9. ^ Görlich D, Prehn S, Hartmann E, Kalies KU, Rapoport TA (October 1992). "A mammalian homolog of SEC61p and SECYp is associated with ribosomes and nascent polypeptides during translocation". Cell. 71 (3): 489–503. doi:10.1016/0092-8674(92)90517-G. PMID 1423609. S2CID 19078317.
  10. ^ Lodish H, et al. (2003). Molecular Cell Biology (5th ed.). W. H. Freeman. pp. 659–666. ISBN 978-0-7167-4366-8.
  11. ^ Seiser RM, Nicchitta CV (October 2000). "The fate of membrane-bound ribosomes following the termination of protein synthesis". The Journal of Biological Chemistry. 275 (43): 33820–7. doi:10.1074/jbc.M004462200. PMID 10931837.
  12. ^ a b Shibata Y, Voeltz GK, Rapoport TA (August 2006). "Rough sheets and smooth tubules". Cell. 126 (3): 435–9. doi:10.1016/j.cell.2006.07.019. PMID 16901774. S2CID 16107069.
  13. ^ Terasaki M, Shemesh T, Kasthuri N, Klemm RW, Schalek R, Hayworth KJ, Hand AR, Yankova M, Huber G, Lichtman JW, Rapoport TA, Kozlov MM (July 2013). "Stacked endoplasmic reticulum sheets are connected by helicoidal membrane motifs". Cell. 154 (2): 285–96. doi:10.1016/j.cell.2013.06.031. PMC 3767119. PMID 23870120.
  14. ^ Guven J, Huber G, Valencia DM (October 2014). "Terasaki spiral ramps in the rough endoplasmic reticulum". Physical Review Letters. 113 (18): 188101. Bibcode:2014PhRvL.113r8101G. doi:10.1103/PhysRevLett.113.188101. PMID 25396396.
  15. ^ Endoplasmic reticulum. (n.d.). McGraw-Hill Encyclopedia of Science and Technology. Retrieved September 13, 2006, from Answers.com Web site: "Answers - the Most Trusted Place for Answering Life's Questions". Answers.com. from the original on 2006-11-16. Retrieved 2006-09-13.
  16. ^ Levine T (September 2004). "Short-range intracellular trafficking of small molecules across endoplasmic reticulum junctions". Trends in Cell Biology. 14 (9): 483–90. doi:10.1016/j.tcb.2004.07.017. PMID 15350976.
  17. ^ Levine T, Loewen C (August 2006). "Inter-organelle membrane contact sites: through a glass, darkly". Current Opinion in Cell Biology. 18 (4): 371–8. doi:10.1016/j.ceb.2006.06.011. PMID 16806880.
  18. ^ Kannan, Muthukumar; Lahiri, Sujoy; Liu, Li-Ka; Choudhary, Vineet; Prinz, William A. (March 2017). "Phosphatidylserine synthesis at membrane contact sites promotes its transport out of the ER". Journal of Lipid Research. 58 (3): 553–562. doi:10.1194/jlr.M072959. PMC 5335585. PMID 28119445.
  19. ^ Kannan, Muthukumar; Riekhof, Wayne R.; Voelker, Dennis R. (February 2015). "Transport of Phosphatidylserine from the Endoplasmic Reticulum to the Site of Phosphatidylserine Decarboxylase2 in Yeast: Phosphatidylserine Transport to the Locus of Psd2p". Traffic. 16 (2): 123–134. doi:10.1111/tra.12236. PMID 25355612. S2CID 34302.
  20. ^ Friedman, Jonathan R.; Kannan, Muthukumar; Toulmay, Alexandre; Jan, Calvin H.; Weissman, Jonathan S.; Prinz, William A.; Nunnari, Jodi (January 2018). "Lipid Homeostasis Is Maintained by Dual Targeting of the Mitochondrial PE Biosynthesis Enzyme to the ER". Developmental Cell. 44 (2): 261–270.e6. doi:10.1016/j.devcel.2017.11.023. PMC 5975648. PMID 29290583.
  21. ^ "Functions of Smooth ER". University of Minnesota Duluth.
  22. ^ Maxfield FR, Wüstner D (October 2002). "Intracellular cholesterol transport". The Journal of Clinical Investigation. 110 (7): 891–8. doi:10.1172/JCI16500. PMC 151159. PMID 12370264.
  23. ^ Toyoshima C, Nakasako M, Nomura H, Ogawa H (June 2000). "Crystal structure of the calcium pump of sarcoplasmic reticulum at 2.6 A resolution". Nature. 405 (6787): 647–55. Bibcode:2000Natur.405..647T. doi:10.1038/35015017. PMID 10864315. S2CID 4316039.
  24. ^ Goodman SR (2007-11-26). Medical Cell Biology (3rd ed.). Academic Press. p. 69. ISBN 9780080919317.
  25. ^ Martini F, Nath J, Bartholomew E (2014). Fundamentals of Anatomy and Physiology (10th ed.). ISBN 978-0321909077.
  26. ^ Xu C, Bailly-Maitre B, Reed JC (October 2005). "Endoplasmic reticulum stress: cell life and death decisions". The Journal of Clinical Investigation. 115 (10): 2656–64. doi:10.1172/JCI26373. PMC 1236697. PMID 16200199.
  27. ^ Kober L, Zehe C, Bode J (October 2012). "Development of a novel ER stress based selection system for the isolation of highly productive clones". Biotechnology and Bioengineering. 109 (10): 2599–611. doi:10.1002/bit.24527. PMID 22510960. S2CID 25858120.
  28. ^ Ozcan U, Cao Q, Yilmaz E, Lee AH, Iwakoshi NN, Ozdelen E, Tuncman G, Görgün C, Glimcher LH, Hotamisligil GS (October 2004). "Endoplasmic reticulum stress links obesity, insulin action, and type 2 diabetes". Science. 306 (5695): 457–61. Bibcode:2004Sci...306..457O. doi:10.1126/science.1103160. PMID 15486293. S2CID 22517395.
  29. ^ Soltys BJ, Gupta RS (1992). "Interrelationships of endoplasmic reticulum, mitochondria, intermediate filaments, and microtubules--a quadruple fluorescence labeling study". Biochemistry and Cell Biology. 70 (10–11): 1174–86. doi:10.1139/o92-163. PMID 1363623.
  30. ^ Stornaiuolo M, Lotti LV, Borgese N, Torrisi MR, Mottola G, Martire G, Bonatti S (March 2003). "KDEL and KKXX retrieval signals appended to the same reporter protein determine different trafficking between endoplasmic reticulum, intermediate compartment, and Golgi complex". Molecular Biology of the Cell. 14 (3): 889–902. doi:10.1091/mbc.E02-08-0468. PMC 151567. PMID 12631711.
  31. ^ Raykhel I, Alanen H, Salo K, Jurvansuu J, Nguyen VD, Latva-Ranta M, Ruddock L (December 2007). "A molecular specificity code for the three mammalian KDEL receptors". The Journal of Cell Biology. 179 (6): 1193–204. doi:10.1083/jcb.200705180. PMC 2140024. PMID 18086916.
  32. ^ Clairmont, CA; De Maio, A; Hirschberg, CB (25 February 1992). "Translocation of ATP into the lumen of rough endoplasmic reticulum-derived vesicles and its binding to luminal proteins including BiP (GRP 78) and GRP 94". The Journal of Biological Chemistry. 267 (6): 3983–90. doi:10.1016/S0021-9258(19)50622-6. PMID 1740446.
  33. ^ Klein, Marie-Christine; Zimmermann, Katharina; Schorr, Stefan; Landini, Martina; Klemens, Patrick A. W.; Altensell, Jacqueline; Jung, Martin; Krause, Elmar; Nguyen, Duy; Helms, Volkhard; Rettig, Jens; Fecher-Trost, Claudia; Cavalié, Adolfo; Hoth, Markus; Bogeski, Ivan; Neuhaus, H. Ekkehard; Zimmermann, Richard; Lang, Sven; Haferkamp, Ilka (28 August 2018). "AXER is an ATP/ADP exchanger in the membrane of the endoplasmic reticulum". Nature Communications. 9 (1): 3489. Bibcode:2018NatCo...9.3489K. doi:10.1038/s41467-018-06003-9. PMC 6113206. PMID 30154480.
  34. ^ Yong, Jing; Bischof, Helmut; Burgstaller, Sandra; Siirin, Marina; Murphy, Anne; Malli, Roland; Kaufman, Randal J (9 September 2019). "Mitochondria supply ATP to the ER through a mechanism antagonized by cytosolic Ca2+". eLife. 8. doi:10.7554/eLife.49682. PMC 6763289. PMID 31498082.
  35. ^ Yong, Jing; Johnson, James D.; Arvan, Peter; Han, Jaeseok; Kaufman, Randal J. (August 2021). "Therapeutic opportunities for pancreatic β-cell ER stress in diabetes mellitus". Nature Reviews Endocrinology. 17 (8): 455–467. doi:10.1038/s41574-021-00510-4. PMC 8765009. PMID 34163039.
  36. ^ van Vliet, Stephan; Koh, Han-Chow E.; Patterson, Bruce W.; Yoshino, Mihoko; LaForest, Richard; Gropler, Robert J.; Klein, Samuel; Mittendorfer, Bettina (1 October 2020). "Obesity Is Associated With Increased Basal and Postprandial β-Cell Insulin Secretion Even in the Absence of Insulin Resistance". Diabetes. 69 (10): 2112–2119. doi:10.2337/db20-0377. PMC 7506835. PMID 32651241.
  37. ^ Mittendorfer, Bettina; Patterson, Bruce W.; Smith, Gordon I.; Yoshino, Mihoko; Klein, Samuel (1 February 2022). "β Cell function and plasma insulin clearance in people with obesity and different glycemic status". Journal of Clinical Investigation. 132 (3): e154068. doi:10.1172/JCI154068. PMC 8803344. PMID 34905513.
  38. ^ Casas-Tinto S, Zhang Y, Sanchez-Garcia J, Gomez-Velazquez M, Rincon-Limas DE, Fernandez-Funez P (June 2011). "The ER stress factor XBP1s prevents amyloid-beta neurotoxicity". Human Molecular Genetics. 20 (11): 2144–60. doi:10.1093/hmg/ddr100. PMC 3090193. PMID 21389082.
  39. ^ Kaser A, Lee AH, Franke A, Glickman JN, Zeissig S, Tilg H, Nieuwenhuis EE, Higgins DE, Schreiber S, Glimcher LH, Blumberg RS (September 2008). "XBP1 links ER stress to intestinal inflammation and confers genetic risk for human inflammatory bowel disease". Cell. 134 (5): 743–56. doi:10.1016/j.cell.2008.07.021. PMC 2586148. PMID 18775308.
  40. ^ Walter, Peter. "Peter Walter's Short Talk: Unfolding the UPR". iBiology.
  41. ^ Moreno JA, Halliday M, Molloy C, Radford H, Verity N, Axten JM, Ortori CA, Willis AE, Fischer PM, Barrett DA, Mallucci GR (October 2013). "Oral treatment targeting the unfolded protein response prevents neurodegeneration and clinical disease in prion-infected mice". Science Translational Medicine. 5 (206): 206ra138. doi:10.1126/scitranslmed.3006767. PMID 24107777. S2CID 25570626.

External links edit

  • Endoplasmic Reticulum
  • Lipid and protein composition of Endoplasmic reticulum in OPM database
  • Animations of the various cell functions referenced here 2008-04-22 at the Wayback Machine

endoplasmic, reticulum, endoplasmic, reticulum, essence, transportation, system, eukaryotic, cell, many, other, important, functions, such, protein, folding, type, organelle, made, subunits, rough, endoplasmic, reticulum, smooth, endoplasmic, reticulum, endopl. The endoplasmic reticulum ER is in essence the transportation system of the eukaryotic cell and has many other important functions such as protein folding It is a type of organelle made up of two subunits rough endoplasmic reticulum RER and smooth endoplasmic reticulum SER The endoplasmic reticulum is found in most eukaryotic cells and forms an interconnected network of flattened membrane enclosed sacs known as cisternae in the RER and tubular structures in the SER The membranes of the ER are continuous with the outer nuclear membrane The endoplasmic reticulum is not found in red blood cells or spermatozoa Cell biologyAnimal cell diagramComponents of a typical animal cell Nucleolus Nucleus Ribosome dots as part of 5 Vesicle Rough endoplasmic reticulum Golgi apparatus or Golgi body Cytoskeleton Smooth endoplasmic reticulum Mitochondrion Vacuole Cytosol fluid that contains organelles with which comprises cytoplasm Lysosome Centrosome Cell membraneMicrograph of rough endoplasmic reticulum network around the nucleus shown in the lower right hand area of the picture Dark small circles in the network are mitochondria The two types of ER share many of the same proteins and engage in certain common activities such as the synthesis of certain lipids and cholesterol Different types of cells contain different ratios of the two types of ER depending on the activities of the cell RER is found mainly toward the nucleus of cell and SER towards the cell membrane or plasma membrane of cell The outer cytosolic face of the RER is studded with ribosomes that are the sites of protein synthesis The RER is especially prominent in cells such as hepatocytes The SER lacks ribosomes and functions in lipid synthesis but not metabolism the production of steroid hormones and detoxification 1 The SER is especially abundant in mammalian liver and gonad cells The ER was observed by light microscopy by Garnier in 1897 who coined the term ergastoplasm 2 3 The lacy membranes of the endoplasmic reticulum were first seen by electron microscopy in 1945 by Keith R Porter Albert Claude and Ernest F Fullam 4 Later the word reticulum which means network was applied by Porter in 1953 to describe this fabric of membranes 5 Contents 1 Structure 1 1 Rough endoplasmic reticulum 1 2 Smooth endoplasmic reticulum 1 2 1 Sarcoplasmic reticulum 2 Functions 2 1 Protein transport 2 2 Bioenergetics regulation of ER ATP supply by a CaATiER mechanism 3 Clinical significance 4 References 5 External linksStructure edit nbsp 1 Nucleus 2 Nuclear pore 3 Rough endoplasmic reticulum RER 4 Smooth endoplasmic reticulum SER 5 Ribosome on the rough ER 6 Proteins that are transported 7 Transport vesicle 8 Golgi apparatus 9 Cis face of the Golgi apparatus 10 Trans face of the Golgi apparatus 11 Cisternae of the Golgi apparatus nbsp 3D rendering of endoplasmic reticulumThe general structure of the endoplasmic reticulum is a network of membranes called cisternae These sac like structures are held together by the cytoskeleton The phospholipid membrane encloses the cisternal space or lumen which is continuous with the perinuclear space but separate from the cytosol The functions of the endoplasmic reticulum can be summarized as the synthesis and export of proteins and membrane lipids but varies between ER and cell type and cell function The quantity of both rough and smooth endoplasmic reticulum in a cell can slowly interchange from one type to the other depending on the changing metabolic activities of the cell Transformation can include embedding of new proteins in membrane as well as structural changes Changes in protein content may occur without noticeable structural changes 6 7 Rough endoplasmic reticulum edit nbsp A 2 minute animation showing how a protein destined for the secretory pathway is synthesized and secreted into the rough endoplasmic reticulum which appears at the upper right approximately halfway through the animation The surface of the rough endoplasmic reticulum often abbreviated RER or rough ER also called granular endoplasmic reticulum is studded with protein manufacturing ribosomes giving it a rough appearance hence its name 8 The binding site of the ribosome on the rough endoplasmic reticulum is the translocon 9 However the ribosomes are not a stable part of this organelle s structure as they are constantly being bound and released from the membrane A ribosome only binds to the RER once a specific protein nucleic acid complex forms in the cytosol This special complex forms when a free ribosome begins translating the mRNA of a protein destined for the secretory pathway 10 The first 5 30 amino acids polymerized encode a signal peptide a molecular message that is recognized and bound by a signal recognition particle SRP Translation pauses and the ribosome complex binds to the RER translocon where translation continues with the nascent new protein forming into the RER lumen and or membrane The protein is processed in the ER lumen by an enzyme a signal peptidase which removes the signal peptide Ribosomes at this point may be released back into the cytosol however non translating ribosomes are also known to stay associated with translocons 11 The membrane of the rough endoplasmic reticulum is in the form of large double membrane sheets that are located near and continuous with the outer layer of the nuclear envelope 12 The double membrane sheets are stacked and connected through several right or left handed helical ramps the Terasaki ramps giving rise to a structure resembling a parking garage 13 14 Although there is no continuous membrane between the endoplasmic reticulum and the Golgi apparatus membrane bound transport vesicles shuttle proteins between these two compartments 15 Vesicles are surrounded by coating proteins called COPI and COPII COPII targets vesicles to the Golgi apparatus and COPI marks them to be brought back to the rough endoplasmic reticulum The rough endoplasmic reticulum works in concert with the Golgi complex to target new proteins to their proper destinations The second method of transport out of the endoplasmic reticulum involves areas called membrane contact sites where the membranes of the endoplasmic reticulum and other organelles are held closely together allowing the transfer of lipids and other small molecules 16 17 The rough endoplasmic reticulum is key in multiple functions citation needed Manufacture of lysosomal enzymes with a mannose 6 phosphate marker added in the cis Golgi network citation needed Manufacture of secreted proteins either secreted constitutively with no tag or secreted in a regulatory manner involving clathrin and paired basic amino acids in the signal peptide Integral membrane proteins that stay embedded in the membrane as vesicles exit and bind to new membranes Rab proteins are key in targeting the membrane SNAP and SNARE proteins are key in the fusion event Initial glycosylation as assembly continues This is N linked O linking occurs in the Golgi N linked glycosylation If the protein is properly folded oligosaccharyltransferase recognizes the AA sequence NXS or NXT with the S T residue phosphorylated and adds a 14 sugar backbone 2 N acetylglucosamine 9 branching mannose and 3 glucose at the end to the side chain nitrogen of Asn Smooth endoplasmic reticulum edit nbsp Electron micrograph showing smooth ER arrow in mouse tissue at 110 510 magnification In most cells the smooth endoplasmic reticulum abbreviated SER is scarce Instead there are areas where the ER is partly smooth and partly rough this area is called the transitional ER The transitional ER gets its name because it contains ER exit sites These are areas where the transport vesicles that contain lipids and proteins made in the ER detach from the ER and start moving to the Golgi apparatus Specialized cells can have a lot of smooth endoplasmic reticulum and in these cells the smooth ER has many functions 6 It synthesizes lipids phospholipids 18 19 20 and steroids Cells which secrete these products such as those in the testes ovaries and sebaceous glands have an abundance of smooth endoplasmic reticulum 21 It also carries out the metabolism of carbohydrates detoxification of natural metabolism products and of alcohol and drugs attachment of receptors on cell membrane proteins and steroid metabolism 22 In muscle cells it regulates calcium ion concentration Smooth endoplasmic reticulum is found in a variety of cell types both animal and plant and it serves different functions in each The smooth endoplasmic reticulum also contains the enzyme glucose 6 phosphatase which converts glucose 6 phosphate to glucose a step in gluconeogenesis It is connected to the nuclear envelope and consists of tubules that are located near the cell periphery These tubes sometimes branch forming a network that is reticular in appearance 12 In some cells there are dilated areas like the sacs of rough endoplasmic reticulum The network of smooth endoplasmic reticulum allows for an increased surface area to be devoted to the action or storage of key enzymes and the products of these enzymes citation needed Sarcoplasmic reticulum edit nbsp Skeletal muscle fiber with sarcoplasmic reticulum colored in blue Main article Sarcoplasmic reticulum See also Calcium induced calcium release The sarcoplasmic reticulum SR from the Greek sar3 sarx flesh is smooth ER found in muscle cells The only structural difference between this organelle and the smooth endoplasmic reticulum is the composition of proteins they have both bound to their membranes and drifting within the confines of their lumens This fundamental difference is indicative of their functions The endoplasmic reticulum synthesizes molecules while the sarcoplasmic reticulum stores calcium ions and pumps them out into the sarcoplasm when the muscle fiber is stimulated 23 24 After their release from the sarcoplasmic reticulum calcium ions interact with contractile proteins that utilize ATP to shorten the muscle fiber The sarcoplasmic reticulum plays a major role in excitation contraction coupling 25 Functions editThe endoplasmic reticulum serves many general functions including the folding of protein molecules in sacs called cisternae and the transport of synthesized proteins in vesicles to the Golgi apparatus Rough endoplasmic reticulum is also involved in protein synthesis Correct folding of newly made proteins is made possible by several endoplasmic reticulum chaperone proteins including protein disulfide isomerase PDI ERp29 the Hsp70 family member BiP Grp78 calnexin calreticulin and the peptidylprolyl isomerase family Only properly folded proteins are transported from the rough ER to the Golgi apparatus unfolded proteins cause an unfolded protein response as a stress response in the ER Disturbances in redox regulation calcium regulation glucose deprivation and viral infection 26 or the over expression of proteins 27 can lead to endoplasmic reticulum stress response ER stress a state in which the folding of proteins slows leading to an increase in unfolded proteins This stress is emerging as a potential cause of damage in hypoxia ischemia insulin resistance and other disorders 28 Protein transport edit Secretory proteins mostly glycoproteins are moved across the endoplasmic reticulum membrane Proteins that are transported by the endoplasmic reticulum throughout the cell are marked with an address tag called a signal sequence The N terminus one end of a polypeptide chain i e a protein contains a few amino acids that work as an address tag which are removed when the polypeptide reaches its destination Nascent peptides reach the ER via the translocon a membrane embedded multiprotein complex Proteins that are destined for places outside the endoplasmic reticulum are packed into transport vesicles and moved along the cytoskeleton toward their destination In human fibroblasts the ER is always co distributed with microtubules and the depolymerisation of the latter cause its co aggregation with mitochondria which are also associated with the ER 29 The endoplasmic reticulum is also part of a protein sorting pathway It is in essence the transportation system of the eukaryotic cell The majority of its resident proteins are retained within it through a retention motif This motif is composed of four amino acids at the end of the protein sequence The most common retention sequences are KDEL for lumen located proteins and KKXX for transmembrane protein 30 However variations of KDEL and KKXX do occur and other sequences can also give rise to endoplasmic reticulum retention It is not known whether such variation can lead to sub ER localizations There are three KDEL 1 2 and 3 receptors in mammalian cells and they have a very high degree of sequence identity The functional differences between these receptors remain to be established 31 Bioenergetics regulation of ER ATP supply by a CaATiER mechanism edit nbsp Ca2 antagonized transport into the endoplasmic reticulum CaATiER modelThe endoplasmic reticulum does not harbor an ATP regeneration machinery and therefore requires ATP import from mitochondria The imported ATP is vital for the ER to carry out its house keeping cellular functions such as for protein folding and trafficking 32 The ER ATP transporter SLC35B1 AXER was recently cloned and characterized 33 and the mitochondria supply ATP to the ER through a Ca2 antagonized transport into the ER CaATiER mechanism 34 The CaATiER mechanism shows sensitivity to cytosolic Ca2 ranging from high nM to low mM range with the Ca2 sensing element yet to be identified and validated citation needed Clinical significance editIncreased and supraphysiological ER stress in pancreatic b cells disrupts normal insulin secretion leading to hyperinsulinemia 35 and consequently peripheral insulin resistance associated with obesity in humans 36 Human clinical trials also suggested a causal link between obesity induced increase in insulin secretion and peripheral insulin resistance 37 Abnormalities in XBP1 lead to a heightened endoplasmic reticulum stress response and subsequently causes a higher susceptibility for inflammatory processes that may even contribute to Alzheimer s disease 38 In the colon XBP1 anomalies have been linked to the inflammatory bowel diseases including Crohn s disease 39 The unfolded protein response UPR is a cellular stress response related to the endoplasmic reticulum 40 The UPR is activated in response to an accumulation of unfolded or misfolded proteins in the lumen of the endoplasmic reticulum The UPR functions to restore normal function of the cell by halting protein translation degrading misfolded proteins and activating the signaling pathways that lead to increasing the production of molecular chaperones involved in protein folding Sustained overactivation of the UPR has been implicated in prion diseases as well as several other neurodegenerative diseases and the inhibition of the UPR could become a treatment for those diseases 41 References edit Endoplasmic Reticulum Rough and Smooth British Society of Cell Biology Archived from the original on 24 November 2015 Retrieved 21 November 2015 Garnier C 1897 Les filaments basaux des cellules glandulaires Note preliminaire Bibliographie Anatomique 5 278 289 OCLC 493441682 Buvat R 1963 Electron Microscopy of Plant Protoplasm International Review of Cytology Volume 14 International Review of Cytology Vol 14 pp 41 155 doi 10 1016 S0074 7696 08 60021 2 ISBN 978 0 12 364314 8 PMID 14283576 Porter KR Claude A Fullam EF March 1945 A study of tissue culture cells by electron microscopy methods and preliminary observations The Journal of Experimental Medicine 81 3 233 46 doi 10 1084 jem 81 3 233 PMC 2135493 PMID 19871454 PORTER KR May 1953 Observations on a submicroscopic basophilic component of cytoplasm The Journal of Experimental Medicine 97 5 727 50 doi 10 1084 jem 97 5 727 PMC 2136295 PMID 13052830 a b Alberts B Johnson A Lewis J Raff M Roberts K Walter P 2002 Molecular biology of the cell 4th ed New York Garland Science ISBN 978 0 8153 3218 3 Archived from the original on 2017 10 03 Cooper GM 2000 The cell a molecular approach 2nd ed Washington DC ASM Press ISBN 978 0 87893 106 4 reticulum The Free Dictionary Gorlich D Prehn S Hartmann E Kalies KU Rapoport TA October 1992 A mammalian homolog of SEC61p and SECYp is associated with ribosomes and nascent polypeptides during translocation Cell 71 3 489 503 doi 10 1016 0092 8674 92 90517 G PMID 1423609 S2CID 19078317 Lodish H et al 2003 Molecular Cell Biology 5th ed W H Freeman pp 659 666 ISBN 978 0 7167 4366 8 Seiser RM Nicchitta CV October 2000 The fate of membrane bound ribosomes following the termination of protein synthesis The Journal of Biological Chemistry 275 43 33820 7 doi 10 1074 jbc M004462200 PMID 10931837 a b Shibata Y Voeltz GK Rapoport TA August 2006 Rough sheets and smooth tubules Cell 126 3 435 9 doi 10 1016 j cell 2006 07 019 PMID 16901774 S2CID 16107069 Terasaki M Shemesh T Kasthuri N Klemm RW Schalek R Hayworth KJ Hand AR Yankova M Huber G Lichtman JW Rapoport TA Kozlov MM July 2013 Stacked endoplasmic reticulum sheets are connected by helicoidal membrane motifs Cell 154 2 285 96 doi 10 1016 j cell 2013 06 031 PMC 3767119 PMID 23870120 Guven J Huber G Valencia DM October 2014 Terasaki spiral ramps in the rough endoplasmic reticulum Physical Review Letters 113 18 188101 Bibcode 2014PhRvL 113r8101G doi 10 1103 PhysRevLett 113 188101 PMID 25396396 Endoplasmic reticulum n d McGraw Hill Encyclopedia of Science and Technology Retrieved September 13 2006 from Answers com Web site Answers the Most Trusted Place for Answering Life s Questions Answers com Archived from the original on 2006 11 16 Retrieved 2006 09 13 Levine T September 2004 Short range intracellular trafficking of small molecules across endoplasmic reticulum junctions Trends in Cell Biology 14 9 483 90 doi 10 1016 j tcb 2004 07 017 PMID 15350976 Levine T Loewen C August 2006 Inter organelle membrane contact sites through a glass darkly Current Opinion in Cell Biology 18 4 371 8 doi 10 1016 j ceb 2006 06 011 PMID 16806880 Kannan Muthukumar Lahiri Sujoy Liu Li Ka Choudhary Vineet Prinz William A March 2017 Phosphatidylserine synthesis at membrane contact sites promotes its transport out of the ER Journal of Lipid Research 58 3 553 562 doi 10 1194 jlr M072959 PMC 5335585 PMID 28119445 Kannan Muthukumar Riekhof Wayne R Voelker Dennis R February 2015 Transport of Phosphatidylserine from the Endoplasmic Reticulum to the Site of Phosphatidylserine Decarboxylase2 in Yeast Phosphatidylserine Transport to the Locus of Psd2p Traffic 16 2 123 134 doi 10 1111 tra 12236 PMID 25355612 S2CID 34302 Friedman Jonathan R Kannan Muthukumar Toulmay Alexandre Jan Calvin H Weissman Jonathan S Prinz William A Nunnari Jodi January 2018 Lipid Homeostasis Is Maintained by Dual Targeting of the Mitochondrial PE Biosynthesis Enzyme to the ER Developmental Cell 44 2 261 270 e6 doi 10 1016 j devcel 2017 11 023 PMC 5975648 PMID 29290583 Functions of Smooth ER University of Minnesota Duluth Maxfield FR Wustner D October 2002 Intracellular cholesterol transport The Journal of Clinical Investigation 110 7 891 8 doi 10 1172 JCI16500 PMC 151159 PMID 12370264 Toyoshima C Nakasako M Nomura H Ogawa H June 2000 Crystal structure of the calcium pump of sarcoplasmic reticulum at 2 6 A resolution Nature 405 6787 647 55 Bibcode 2000Natur 405 647T doi 10 1038 35015017 PMID 10864315 S2CID 4316039 Goodman SR 2007 11 26 Medical Cell Biology 3rd ed Academic Press p 69 ISBN 9780080919317 Martini F Nath J Bartholomew E 2014 Fundamentals of Anatomy and Physiology 10th ed ISBN 978 0321909077 Xu C Bailly Maitre B Reed JC October 2005 Endoplasmic reticulum stress cell life and death decisions The Journal of Clinical Investigation 115 10 2656 64 doi 10 1172 JCI26373 PMC 1236697 PMID 16200199 Kober L Zehe C Bode J October 2012 Development of a novel ER stress based selection system for the isolation of highly productive clones Biotechnology and Bioengineering 109 10 2599 611 doi 10 1002 bit 24527 PMID 22510960 S2CID 25858120 Ozcan U Cao Q Yilmaz E Lee AH Iwakoshi NN Ozdelen E Tuncman G Gorgun C Glimcher LH Hotamisligil GS October 2004 Endoplasmic reticulum stress links obesity insulin action and type 2 diabetes Science 306 5695 457 61 Bibcode 2004Sci 306 457O doi 10 1126 science 1103160 PMID 15486293 S2CID 22517395 Soltys BJ Gupta RS 1992 Interrelationships of endoplasmic reticulum mitochondria intermediate filaments and microtubules a quadruple fluorescence labeling study Biochemistry and Cell Biology 70 10 11 1174 86 doi 10 1139 o92 163 PMID 1363623 Stornaiuolo M Lotti LV Borgese N Torrisi MR Mottola G Martire G Bonatti S March 2003 KDEL and KKXX retrieval signals appended to the same reporter protein determine different trafficking between endoplasmic reticulum intermediate compartment and Golgi complex Molecular Biology of the Cell 14 3 889 902 doi 10 1091 mbc E02 08 0468 PMC 151567 PMID 12631711 Raykhel I Alanen H Salo K Jurvansuu J Nguyen VD Latva Ranta M Ruddock L December 2007 A molecular specificity code for the three mammalian KDEL receptors The Journal of Cell Biology 179 6 1193 204 doi 10 1083 jcb 200705180 PMC 2140024 PMID 18086916 Clairmont CA De Maio A Hirschberg CB 25 February 1992 Translocation of ATP into the lumen of rough endoplasmic reticulum derived vesicles and its binding to luminal proteins including BiP GRP 78 and GRP 94 The Journal of Biological Chemistry 267 6 3983 90 doi 10 1016 S0021 9258 19 50622 6 PMID 1740446 Klein Marie Christine Zimmermann Katharina Schorr Stefan Landini Martina Klemens Patrick A W Altensell Jacqueline Jung Martin Krause Elmar Nguyen Duy Helms Volkhard Rettig Jens Fecher Trost Claudia Cavalie Adolfo Hoth Markus Bogeski Ivan Neuhaus H Ekkehard Zimmermann Richard Lang Sven Haferkamp Ilka 28 August 2018 AXER is an ATP ADP exchanger in the membrane of the endoplasmic reticulum Nature Communications 9 1 3489 Bibcode 2018NatCo 9 3489K doi 10 1038 s41467 018 06003 9 PMC 6113206 PMID 30154480 Yong Jing Bischof Helmut Burgstaller Sandra Siirin Marina Murphy Anne Malli Roland Kaufman Randal J 9 September 2019 Mitochondria supply ATP to the ER through a mechanism antagonized by cytosolic Ca2 eLife 8 doi 10 7554 eLife 49682 PMC 6763289 PMID 31498082 Yong Jing Johnson James D Arvan Peter Han Jaeseok Kaufman Randal J August 2021 Therapeutic opportunities for pancreatic b cell ER stress in diabetes mellitus Nature Reviews Endocrinology 17 8 455 467 doi 10 1038 s41574 021 00510 4 PMC 8765009 PMID 34163039 van Vliet Stephan Koh Han Chow E Patterson Bruce W Yoshino Mihoko LaForest Richard Gropler Robert J Klein Samuel Mittendorfer Bettina 1 October 2020 Obesity Is Associated With Increased Basal and Postprandial b Cell Insulin Secretion Even in the Absence of Insulin Resistance Diabetes 69 10 2112 2119 doi 10 2337 db20 0377 PMC 7506835 PMID 32651241 Mittendorfer Bettina Patterson Bruce W Smith Gordon I Yoshino Mihoko Klein Samuel 1 February 2022 b Cell function and plasma insulin clearance in people with obesity and different glycemic status Journal of Clinical Investigation 132 3 e154068 doi 10 1172 JCI154068 PMC 8803344 PMID 34905513 Casas Tinto S Zhang Y Sanchez Garcia J Gomez Velazquez M Rincon Limas DE Fernandez Funez P June 2011 The ER stress factor XBP1s prevents amyloid beta neurotoxicity Human Molecular Genetics 20 11 2144 60 doi 10 1093 hmg ddr100 PMC 3090193 PMID 21389082 Kaser A Lee AH Franke A Glickman JN Zeissig S Tilg H Nieuwenhuis EE Higgins DE Schreiber S Glimcher LH Blumberg RS September 2008 XBP1 links ER stress to intestinal inflammation and confers genetic risk for human inflammatory bowel disease Cell 134 5 743 56 doi 10 1016 j cell 2008 07 021 PMC 2586148 PMID 18775308 Walter Peter Peter Walter s Short Talk Unfolding the UPR iBiology Moreno JA Halliday M Molloy C Radford H Verity N Axten JM Ortori CA Willis AE Fischer PM Barrett DA Mallucci GR October 2013 Oral treatment targeting the unfolded protein response prevents neurodegeneration and clinical disease in prion infected mice Science Translational Medicine 5 206 206ra138 doi 10 1126 scitranslmed 3006767 PMID 24107777 S2CID 25570626 External links editEndoplasmic Reticulum nbsp Wikimedia Commons has media related to Endoplasmic reticulum Lipid and protein composition of Endoplasmic reticulum in OPM database Animations of the various cell functions referenced here Archived 2008 04 22 at the Wayback Machine Retrieved from https en wikipedia org w index php title Endoplasmic reticulum amp oldid 1189564237, wikipedia, wiki, book, books, library,

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