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Acidimicrobiia

The Acidimicrobiia are a class of Actinomycetota, in which three families, eight genera, and nine species have been described, Acidimicrobium ferrooxidans is the type species of the order.[1]

Acidimicrobiia
Acidimicrobium ferrooxidans
Scientific classification
Domain: Bacteria
Phylum: Actinomycetota
Norris 2013[2]
Class: Acidimicrobiia
Stackebrandt et al. 1997[1]
Type genus
Acidimicrobium
Clark and Norris 1996
Families[3]
Synonyms
  • Acidimicrobiidae Rainey & Ward-Rainey 1997
  • "Actinomarinidae" Ghai et al. 2013

Phylogeny edit

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[3] and National Center for Biotechnology Information (NCBI).[4]

MLST based phylogeny of 30 proteins.[5] 16S rRNA based LTP_08_2023[6][7][8]
Acidimicrobiales
Acidimicrobiales
Ilumatobacteraceae

Desertimonas

Ilumatobacter

Iamiaceae

Aquihabitans

Rhabdothermincola

Actinomarinicola

Iamia

120 marker proteins based GTDB 08-RS214[9][10][11]
Acidimicrobiia
"Actinomarinales"
"Actinomarinaceae"

Ca. "Actinomarina" Ghai et al. 2013

Acidimicrobiales
UBA8190

Aciditerrimonas Itoh et al. 2011

Acidimicrobiaceae

Acidithrix Jones & Johnson 2022

Ferrithrix Johnson et al. 2009

Ferrimicrobium Johnson et al. 2009

Acidimicrobium Clark & Norris 1996

Ilumatobacteraceae

Desertimonas Asem et al. 2018

Ilumatobacter Matsumoto et al. 2009

"Poriferisodalaceae"

"Ca. Poriferisodalis" Nguyen 2022

"Rhabdothermincolaceae"

Rhabdothermincola Liu et al. 2021

Iamiaceae

Aquihabitans Jin et al. 2013

Iamia Kurahashi et al. 2009

"Actinomarinicolaceae"

Actinomarinicola He et al. 2020

"Microtrichaceae"

"Ca. Neomicrothrix" corrig. Blackall et al. 1996 ["Ca. Microthrix" Blackall et al. 1996 non Ragonot 1888]

"Aldehyrespiratoraceae"

"Ca. Aldehyrespirator" Nguyen 2022

"Hopanoidivoracaceae"

"Ca. Hopanoidivorans" Nguyen 2022

"Ca. Poriferisocius" Nguyen 2022

Genera incertae sedis edit

  • "Spongiisociales" Nguyen 2022
    • "Spongiisociaceae" Nguyen 2022
      • "Candidatus Spongiisocius" Nguyen 2022
  • Acidimicrobiales
    • Acidithiomicrobium Davis-Belmar & Norris 2009
    • "Microtrichaceae"
      • "Candidatus Limnosphaera" Kim, Kang & Cho 2017

See also edit

References edit

  1. ^ a b Stackebrandt E, Rainey FA, Ward-Rainey NL (1997). "Proposal for a new hierarchic classification system, Actinobacteria classis nov". Int. J. Syst. Bacteriol. 47: 479–491.
  2. ^ Norris PR (2012). "Class II. Acidimicrobiia class. nov.". In Goodfellow M, Kämpfer P, Trujillo ME, Ludwig W, Whitman WB (eds.). Bergey's Manual of Systematic Bacteriology. Vol. 5 (The Actinobacteria), part B (2nd ed.). New York: Springer. p. 1968.
  3. ^ a b Euzéby JP, Parte AC. "Acidimicrobiia". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved June 22, 2021.
  4. ^ Sayers; et al. "Acidimicrobiia". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2021-03-20.
  5. ^ Hu D, Cha G, Gao B. (2018). "A phylogenomic and molecular markers-based analysis of the class Acidimicrobiia". Frontiers in Microbiology. 9: 987. doi:10.3389/fmicb.2018.00987. PMC 5962788. PMID 29867887.
  6. ^ "The LTP". Retrieved 20 November 2023.
  7. ^ "LTP_all tree in newick format". Retrieved 20 November 2023.
  8. ^ "LTP_08_2023 Release Notes" (PDF). Retrieved 20 November 2023.
  9. ^ "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.
  10. ^ "bac120_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.
  11. ^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.

acidimicrobiia, class, actinomycetota, which, three, families, eight, genera, nine, species, have, been, described, acidimicrobium, ferrooxidans, type, species, order, acidimicrobium, ferrooxidansscientific, classificationdomain, bacteriaphylum, actinomycetota. The Acidimicrobiia are a class of Actinomycetota in which three families eight genera and nine species have been described Acidimicrobium ferrooxidans is the type species of the order 1 AcidimicrobiiaAcidimicrobium ferrooxidansScientific classificationDomain BacteriaPhylum ActinomycetotaNorris 2013 2 Class AcidimicrobiiaStackebrandt et al 1997 1 Type genusAcidimicrobiumClark and Norris 1996Families 3 Acidimicrobiales Acidimicrobiaceae Iamiaceae Ilumatobacteraceae Microtrichaceae Actinomarinales Actinomarinaceae Spongiisociales Spongiisociaceae SynonymsAcidimicrobiidae Rainey amp Ward Rainey 1997 Actinomarinidae Ghai et al 2013 Contents 1 Phylogeny 1 1 Genera incertae sedis 2 See also 3 ReferencesPhylogeny editThe currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature LPSN 3 and National Center for Biotechnology Information NCBI 4 MLST based phylogeny of 30 proteins 5 16S rRNA based LTP 08 2023 6 7 8 Acidimicrobiales AciditerrimonasAcidimicrobiaceae AcidithrixFerrithrixFerrimicrobiumAcidimicrobiumIamiaceae AquihabitansIamiaIlumatobacteraceae Ilumatobacter Microtrichaceae Ca Limnosphaera Ca Neomicrothrix Acidimicrobiales Acidimicrobiaceae Acidiferrimicrobium Gonzalez et al 2020AciditerrimonasAcidimicrobiumAcidithrixFerrimicrobiumFerrithrixIlumatobacteraceae DesertimonasIlumatobacterIamiaceae AquihabitansRhabdothermincolaActinomarinicolaIamia120 marker proteins based GTDB 08 RS214 9 10 11 Acidimicrobiia Actinomarinales Actinomarinaceae Ca Actinomarina Ghai et al 2013Acidimicrobiales UBA8190 Aciditerrimonas Itoh et al 2011Acidimicrobiaceae Acidithrix Jones amp Johnson 2022Ferrithrix Johnson et al 2009Ferrimicrobium Johnson et al 2009Acidimicrobium Clark amp Norris 1996Ilumatobacteraceae Desertimonas Asem et al 2018Ilumatobacter Matsumoto et al 2009 Poriferisodalaceae Ca Poriferisodalis Nguyen 2022 Rhabdothermincolaceae Rhabdothermincola Liu et al 2021Iamiaceae Aquihabitans Jin et al 2013Iamia Kurahashi et al 2009 Actinomarinicolaceae Actinomarinicola He et al 2020 Microtrichaceae Ca Neomicrothrix corrig Blackall et al 1996 Ca Microthrix Blackall et al 1996 non Ragonot 1888 Aldehyrespiratoraceae Ca Aldehyrespirator Nguyen 2022 Hopanoidivoracaceae Ca Hopanoidivorans Nguyen 2022 Ca Poriferisocius Nguyen 2022Genera incertae sedis edit Spongiisociales Nguyen 2022 Spongiisociaceae Nguyen 2022 Candidatus Spongiisocius Nguyen 2022 Acidimicrobiales Acidithiomicrobium Davis Belmar amp Norris 2009 Microtrichaceae Candidatus Limnosphaera Kim Kang amp Cho 2017See also editList of bacteria genera List of bacterial ordersReferences edit a b Stackebrandt E Rainey FA Ward Rainey NL 1997 Proposal for a new hierarchic classification system Actinobacteria classis nov Int J Syst Bacteriol 47 479 491 Norris PR 2012 Class II Acidimicrobiia class nov In Goodfellow M Kampfer P Trujillo ME Ludwig W Whitman WB eds Bergey s Manual of Systematic Bacteriology Vol 5 The Actinobacteria part B 2nd ed New York Springer p 1968 a b Euzeby JP Parte AC Acidimicrobiia List of Prokaryotic names with Standing in Nomenclature LPSN Retrieved June 22 2021 Sayers et al Acidimicrobiia National Center for Biotechnology Information NCBI taxonomy database Retrieved 2021 03 20 Hu D Cha G Gao B 2018 A phylogenomic and molecular markers based analysis of the class Acidimicrobiia Frontiers in Microbiology 9 987 doi 10 3389 fmicb 2018 00987 PMC 5962788 PMID 29867887 The LTP Retrieved 20 November 2023 LTP all tree in newick format Retrieved 20 November 2023 LTP 08 2023 Release Notes PDF Retrieved 20 November 2023 GTDB release 08 RS214 Genome Taxonomy Database Retrieved 10 May 2023 bac120 r214 sp label Genome Taxonomy Database Retrieved 10 May 2023 Taxon History Genome Taxonomy Database Retrieved 10 May 2023 Portal nbsp Biology nbsp This Actinomycetota related article is a stub You can help Wikipedia by expanding it vte Retrieved from https en wikipedia org w index php title Acidimicrobiia amp oldid 1190642209, wikipedia, wiki, book, books, library,

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