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Sphingobacteria (phylum)

January 01, 1970

For Bacteroidota class, see Sphingobacteriia.

The FCB group is a superphylum of bacteria named after the main member phyla Fibrobacterota, Chlorobiota, and Bacteroidota. The members are considered to form a clade due to a number of conserved signature indels.[2]

Sphingobacteria
Bacteroides spp.
Scientific classification
Domain: Bacteria
Clade: FCB group
Phyla
Synonyms

Sphingobacteria Cavalier-Smith, 1987[1]

Cavalier-Smith calls the equivalent grouping a phylum by the name of Sphingobacteria. It contains the classes Chlorobiota, Fibrobacterota, Bacteroidota, and Flavobacteria. However, this megaclassification is not followed by the larger scientific community.[3][4][5]

FCB group[2][6][7] 16S rRNA based LTP_12_2021[8][9][10] GTDB 07-RS207 by Genome Taxonomy Database[11][12][13]
FCB

"Hydrogenedentes"

"Latescibacteria (incl. "Handelsmanbacteria")

"Edwardsbacteria""

"Zixibacteria"

"Eisenbacteria"

"Krumholzibacteriota" (incl. "Delphibacteria")

"Fermentibacteria" (incl. "Aegiribacteria")

Gemmatimonadota (incl. "Glassbacteria")

"Hydrothermota" (incl. "Stahlbacteria", "Pyropristinus")

"Cloacimonetes"

Fibrobacterota (incl. "Raymondbacteria")

"Delongbacteria"

An analogous situation is seen with the PVC group/Planctobacteria.

The Bacteroidota–Chlorobiota group in brown is visible on this 2016 tree of life using ribosomal protein sequences[14]

Notes edit

See also edit

References edit

  1. ^ Cavalier-Smith, T. (1987). The origin of cells: a symbiosis between genes, catalysts and membranes. Cold Spring Harbor Symposia on Quantitative Biology 52, 805-24, [1], [2].
  2. ^ a b Gupta, R. S. (2004). "The Phylogeny and Signature Sequences Characteristics of Fibrobacteres, Chlorobi, and Bacteroidetes". Critical Reviews in Microbiology. 30 (2): 123–143. doi:10.1080/10408410490435133. PMID 15239383. S2CID 24565648.
  3. ^ Cavalier-Smith T (2006). "Rooting the tree of life by transition analyses". Biol. Direct. 1: 19. doi:10.1186/1745-6150-1-19. PMC 1586193. PMID 16834776.
  4. ^ Krieg, N.R.; Ludwig, W.; Whitman, W.B.; Hedlund, B.P.; Paster, B.J.; Staley, J.T.; Ward, N.; Brown, D.; Parte, A. (November 24, 2010) [1984(Williams & Wilkins)]. George M. Garrity (ed.). The Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacteres, Fusobacteria, Dictyoglomi, Gemmatimonadetes, Lentisphaerae, Verrucomicrobia, Chlamydiae, and Planctomycetes. Bergey's Manual of Systematic Bacteriology. Vol. 4 (2nd ed.). New York: Springer. p. 908. ISBN 978-0-387-95042-6. British Library no. GBA561951.
  5. ^ Classification in LPSN; Parte, Aidan C.; Sardà Carbasse, Joaquim; Meier-Kolthoff, Jan P.; Reimer, Lorenz C.; Göker, Markus (1 November 2020). "List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ". International Journal of Systematic and Evolutionary Microbiology. 70 (11): 5607–5612. doi:10.1099/ijsem.0.004332.
  6. ^ Emiley A Eloe-Fadrosh et al. 2017, Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs. Nature Communications 7 · January 2016 DOI: 10.1038/ncomms1047
  7. ^ Kirkegaard, Rasmus Hansen; Dueholm, Morten Simonsen; McIlroy, Simon Jon; Nierychlo, Marta; Karst, Søren Michael; Albertsen, Mads; Nielsen, Per Halkjær (October 2016). "Genomic insights into members of the candidate phylum Hyd24-12 common in mesophilic anaerobic digesters". The ISME Journal. 10 (10): 2352–2364. doi:10.1038/ismej.2016.43. ISSN 1751-7370. PMC 5030696. PMID 27058503.
  8. ^ "The LTP". Retrieved 23 February 2021.
  9. ^ "LTP_all tree in newick format". Retrieved 23 February 2021.
  10. ^ "LTP_12_2021 Release Notes" (PDF). Retrieved 23 February 2021.
  11. ^ "GTDB release 07-RS207". Genome Taxonomy Database. Retrieved 20 June 2022.
  12. ^ "ar53_r207.sp_label". Genome Taxonomy Database. Retrieved 20 June 2022.
  13. ^ "Taxon History". Genome Taxonomy Database. Retrieved 20 June 2022.
  14. ^ Hug, Laura A.; Baker, Brett J.; Anantharaman, Karthik; Brown, Christopher T.; Probst, Alexander J.; Castelle, Cindy J.; Butterfield, Cristina N.; Hernsdorf, Alex W.; Amano, Yuki; Ise, Kotaro; Suzuki, Yohey; Dudek, Natasha; Relman, David A.; Finstad, Kari M.; Amundson, Ronald; Thomas, Brian C.; Banfield, Jillian F. (11 April 2016). "A new view of the tree of life". Nature Microbiology. 1 (5): 16048. doi:10.1038/nmicrobiol.2016.48. PMID 27572647.


 

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January 01, 1970
sphingobacteria, phylum, bacteroidota, class, sphingobacteriia, group, superphylum, bacteria, named, after, main, member, phyla, fibrobacterota, chlorobiota, bacteroidota, members, considered, form, clade, number, conserved, signature, indels, sphingobacteria,. For Bacteroidota class see Sphingobacteriia The FCB group is a superphylum of bacteria named after the main member phyla Fibrobacterota Chlorobiota and Bacteroidota The members are considered to form a clade due to a number of conserved signature indels 2 Sphingobacteria Bacteroides spp Scientific classification Domain Bacteria Clade FCB group Phyla Bacteroidota Chlorobiota group Bacteroidota Balneolota Chlorobiota Ignavibacteriota Rhodothermota Ca Kapabacteria Ca Kryptonia Calditrichota Fibrobacterota Gemmatimonadota Ca Aegiribacteria Ca Cloacimonetes Ca Delphibacteria Ca Fermentibacteria Ca Hydrogenedentes Ca Latescibacteria Ca Marinimicrobia Ca Zixibacteria Synonyms Sphingobacteria Cavalier Smith 1987 1 Cavalier Smith calls the equivalent grouping a phylum by the name of Sphingobacteria It contains the classes Chlorobiota Fibrobacterota Bacteroidota and Flavobacteria However this megaclassification is not followed by the larger scientific community 3 4 5 FCB group 2 6 7 16S rRNA based LTP 12 2021 8 9 10 GTDB 07 RS207 by Genome Taxonomy Database 11 12 13 FCB Hydrogenedentes Fermentibacteria Gemmatimonadota Latescibacteria Fibrobacterota Delphibacteria Cloacimonetes Zixibacteria Calditrichota Marinimicrobia Bacteroidota Chlorobiota Ignavibacteriota Kryptonia Kapabacteria Chlorobiota Rhodothermota Bacteroidota Fibrobacterota Gemmatimonadota Calditrichota Ignavibacteriota Chlorobiota Rhodothermota Balneolota Bacteroidota Latescibacteria incl Handelsmanbacteria Edwardsbacteria Zixibacteria Eisenbacteria Krumholzibacteriota incl Delphibacteria Fermentibacteria incl Aegiribacteria Gemmatimonadota incl Glassbacteria Hydrothermota incl Stahlbacteria Pyropristinus Cloacimonetes Fibrobacterota incl Raymondbacteria Delongbacteria Calditrichota Marinisomatota Bacteroidota Kapabacteria Kryptonia Ignavibacteriia Chlorobiia Rhodothermia incl Balneolales Bacteroidia An analogous situation is seen with the PVC group Planctobacteria The Bacteroidota Chlorobiota group in brown is visible on this 2016 tree of life using ribosomal protein sequences 14 Notes editSee also editList of bacterial orders List of bacteria generaReferences edit Cavalier Smith T 1987 The origin of cells a symbiosis between genes catalysts and membranes Cold Spring Harbor Symposia on Quantitative Biology 52 805 24 1 2 a b Gupta R S 2004 The Phylogeny and Signature Sequences Characteristics of Fibrobacteres Chlorobi and Bacteroidetes Critical Reviews in Microbiology 30 2 123 143 doi 10 1080 10408410490435133 PMID 15239383 S2CID 24565648 Cavalier Smith T 2006 Rooting the tree of life by transition analyses Biol Direct 1 19 doi 10 1186 1745 6150 1 19 PMC 1586193 PMID 16834776 Krieg N R Ludwig W Whitman W B Hedlund B P Paster B J Staley J T Ward N Brown D Parte A November 24 2010 1984 Williams amp Wilkins George M Garrity ed The Bacteroidetes Spirochaetes Tenericutes Mollicutes Acidobacteria Fibrobacteres Fusobacteria Dictyoglomi Gemmatimonadetes Lentisphaerae Verrucomicrobia Chlamydiae and Planctomycetes Bergey s Manual of Systematic Bacteriology Vol 4 2nd ed New York Springer p 908 ISBN 978 0 387 95042 6 British Library no GBA561951 Classification in LPSN Parte Aidan C Sarda Carbasse Joaquim Meier Kolthoff Jan P Reimer Lorenz C Goker Markus 1 November 2020 List of Prokaryotic names with Standing in Nomenclature LPSN moves to the DSMZ International Journal of Systematic and Evolutionary Microbiology 70 11 5607 5612 doi 10 1099 ijsem 0 004332 Emiley A Eloe Fadrosh et al 2017 Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs Nature Communications 7 January 2016 DOI 10 1038 ncomms1047 Kirkegaard Rasmus Hansen Dueholm Morten Simonsen McIlroy Simon Jon Nierychlo Marta Karst Soren Michael Albertsen Mads Nielsen Per Halkjaer October 2016 Genomic insights into members of the candidate phylum Hyd24 12 common in mesophilic anaerobic digesters The ISME Journal 10 10 2352 2364 doi 10 1038 ismej 2016 43 ISSN 1751 7370 PMC 5030696 PMID 27058503 The LTP Retrieved 23 February 2021 LTP all tree in newick format Retrieved 23 February 2021 LTP 12 2021 Release Notes PDF Retrieved 23 February 2021 GTDB release 07 RS207 Genome Taxonomy Database Retrieved 20 June 2022 ar53 r207 sp label Genome Taxonomy Database Retrieved 20 June 2022 Taxon History Genome Taxonomy Database Retrieved 20 June 2022 Hug Laura A Baker Brett J Anantharaman Karthik Brown Christopher T Probst Alexander J Castelle Cindy J Butterfield Cristina N Hernsdorf Alex W Amano Yuki Ise Kotaro Suzuki Yohey Dudek Natasha Relman David A Finstad Kari M Amundson Ronald Thomas Brian C Banfield Jillian F 11 April 2016 A new view of the tree of life Nature Microbiology 1 5 16048 doi 10 1038 nmicrobiol 2016 48 PMID 27572647 nbsp This bacteria related article is a stub You can help Wikipedia by expanding it vte Retrieved from https en wikipedia org w index php title Sphingobacteria phylum amp oldid 1193476933, wikipedia, wiki, book, books, library,

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