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Interatomic potential

Interatomic potentials are mathematical functions to calculate the potential energy of a system of atoms with given positions in space.[1][2][3][4] Interatomic potentials are widely used as the physical basis of molecular mechanics and molecular dynamics simulations in computational chemistry, computational physics and computational materials science to explain and predict materials properties. Examples of quantitative properties and qualitative phenomena that are explored with interatomic potentials include lattice parameters, surface energies, interfacial energies, adsorption, cohesion, thermal expansion, and elastic and plastic material behavior, as well as chemical reactions.[5][6][7][8][9][10][11]

Typical shape of an interatomic pair potential.

Functional form edit

Interatomic potentials can be written as a series expansion of functional terms that depend on the position of one, two, three, etc. atoms at a time. Then the total potential of the system   can be written as [3]

 

Here   is the one-body term,   the two-body term,   the three body term,   the number of atoms in the system,   the position of atom  , etc.  ,   and   are indices that loop over atom positions.

Note that in case the pair potential is given per atom pair, in the two-body term the potential should be multiplied by 1/2 as otherwise each bond is counted twice, and similarly the three-body term by 1/6.[3] Alternatively, the summation of the pair term can be restricted to cases   and similarly for the three-body term  , if the potential form is such that it is symmetric with respect to exchange of the   and   indices (this may not be the case for potentials for multielemental systems).

The one-body term is only meaningful if the atoms are in an external field (e.g. an electric field). In the absence of external fields, the potential   should not depend on the absolute position of atoms, but only on the relative positions. This means that the functional form can be rewritten as a function of interatomic distances   and angles between the bonds (vectors to neighbours)  . Then, in the absence of external forces, the general form becomes

 

In the three-body term   the interatomic distance   is not needed since the three terms   are sufficient to give the relative positions of three atoms   in three-dimensional space. Any terms of order higher than 2 are also called many-body potentials. In some interatomic potentials the many-body interactions are embedded into the terms of a pair potential (see discussion on EAM-like and bond order potentials below).

In principle the sums in the expressions run over all   atoms. However, if the range of the interatomic potential is finite, i.e. the potentials   above some cutoff distance  , the summing can be restricted to atoms within the cutoff distance of each other. By also using a cellular method for finding the neighbours,[1] the MD algorithm can be an O(N) algorithm. Potentials with an infinite range can be summed up efficiently by Ewald summation and its further developments.

Force calculation edit

The forces acting between atoms can be obtained by differentiation of the total energy with respect to atom positions. That is, to get the force on atom   one should take the three-dimensional derivative (gradient) of the potential   with respect to the position of atom  :

 

For two-body potentials this gradient reduces, thanks to the symmetry with respect to   in the potential form, to straightforward differentiation with respect to the interatomic distances  . However, for many-body potentials (three-body, four-body, etc.) the differentiation becomes considerably more complex [12] [13] since the potential may not be any longer symmetric with respect to   exchange. In other words, also the energy of atoms   that are not direct neighbours of   can depend on the position   because of angular and other many-body terms, and hence contribute to the gradient  .

Classes of interatomic potentials edit

Interatomic potentials come in many different varieties, with different physical motivations. Even for single well-known elements such as silicon, a wide variety of potentials quite different in functional form and motivation have been developed.[14] The true interatomic interactions are quantum mechanical in nature, and there is no known way in which the true interactions described by the Schrödinger equation or Dirac equation for all electrons and nuclei could be cast into an analytical functional form. Hence all analytical interatomic potentials are by necessity approximations.

Over time interatomic potentials have largely grown more complex and more accurate, although this is not strictly true.[15] This has included both increased descriptions of physics, as well as added parameters. Until recently, all interatomic potentials could be described as "parametric", having been developed and optimized with a fixed number of (physical) terms and parameters. New research focuses instead on non-parametric potentials which can be systematically improvable by using complex local atomic neighbor descriptors and separate mappings to predict system properties, such that the total number of terms and parameters are flexible.[16] These non-parametric models can be significantly more accurate, but since they are not tied to physical forms and parameters, there are many potential issues surrounding extrapolation and uncertainties.

Parametric potentials edit

Pair potentials edit

The arguably simplest widely used interatomic interaction model is the Lennard-Jones potential [17]

 

where   is the depth of the potential well and   is the distance at which the potential crosses zero. The attractive term proportional to  in the potential comes from the scaling of van der Waals forces, while the   repulsive term is much more approximate (conveniently the square of the attractive term).[6] On its own, this potential is quantitatively accurate only for noble gases and has been extensively studied in the past decades,[18] but is also widely used for qualitative studies and in systems where dipole interactions are significant, particularly in chemistry force fields to describe intermolecular interactions - especially in fluids.[19]

Another simple and widely used pair potential is the Morse potential, which consists simply of a sum of two exponentials.

 

Here   is the equilibrium bond energy and   the bond distance. The Morse potential has been applied to studies of molecular vibrations and solids, [20] and also inspired the functional form of more accurate potentials such as the bond-order potentials.

Ionic materials are often described by a sum of a short-range repulsive term, such as the Buckingham pair potential, and a long-range Coulomb potential giving the ionic interactions between the ions forming the material. The short-range term for ionic materials can also be of many-body character .[21]

Pair potentials have some inherent limitations, such as the inability to describe all 3 elastic constants of cubic metals or correctly describe both cohesive energy and vacancy formation energy.[7] Therefore, quantitative molecular dynamics simulations are carried out with various of many-body potentials.

Repulsive potentials edit

For very short interatomic separations, important in radiation material science, the interactions can be described quite accurately with screened Coulomb potentials which have the general form

 

Here,   when  .   and   are the charges of the interacting nuclei, and   is the so-called screening parameter. A widely used popular screening function is the "Universal ZBL" one.[22] and more accurate ones can be obtained from all-electron quantum chemistry calculations [23] In binary collision approximation simulations this kind of potential can be used to describe the nuclear stopping power.

Many-body potentials edit

The Stillinger-Weber potential[24] is a potential that has a two-body and three-body terms of the standard form

 

where the three-body term describes how the potential energy changes with bond bending. It was originally developed for pure Si, but has been extended to many other elements and compounds [25] [26] and also formed the basis for other Si potentials.[27] [28]

Metals are very commonly described with what can be called "EAM-like" potentials, i.e. potentials that share the same functional form as the embedded atom model. In these potentials, the total potential energy is written

 

where   is a so-called embedding function (not to be confused with the force  ) that is a function of the sum of the so-called electron density  .   is a pair potential that usually is purely repulsive. In the original formulation [29][30] the electron density function   was obtained from true atomic electron densities, and the embedding function was motivated from density-functional theory as the energy needed to 'embed' an atom into the electron density. .[31] However, many other potentials used for metals share the same functional form but motivate the terms differently, e.g. based on tight-binding theory [32][33] [34] or other motivations [35] [36] .[37]

EAM-like potentials are usually implemented as numerical tables. A collection of tables is available at the interatomic potential repository at NIST [1]

Covalently bonded materials are often described by bond order potentials, sometimes also called Tersoff-like or Brenner-like potentials. [10] [38] [39]

These have in general a form that resembles a pair potential:

 

where the repulsive and attractive part are simple exponential functions similar to those in the Morse potential. However, the strength is modified by the environment of the atom   via the  term. If implemented without an explicit angular dependence, these potentials can be shown to be mathematically equivalent to some varieties of EAM-like potentials [40] [41] Thanks to this equivalence, the bond-order potential formalism has been implemented also for many metal-covalent mixed materials.[41][42] [43] [44]

EAM potentials have also been extended to describe covalent bonding by adding angular-dependent terms to the electron density function  , in what is called the modified embedded atom method (MEAM).[45][46][47]

Force fields edit

A force field is the collection of parameters to describe the physical interactions between atoms or physical units (up to ~108) using a given energy expression. The term force field characterizes the collection of parameters for a given interatomic potential (energy function) and is often used within the computational chemistry community.[48] The force field parameters make the difference between good and poor models. Force fields are used for the simulation of metals, ceramics, molecules, chemistry, and biological systems, covering the entire periodic table and multiphase materials. Today's performance is among the best for solid-state materials,[49][50] molecular fluids,[19] and for biomacromolecules,[51] whereby biomacromolecules were the primary focus of force fields from the 1970s to the early 2000s. Force fields range from relatively simple and interpretable fixed-bond models (e.g. Interface force field,[48] CHARMM,[52] and COMPASS) to explicitly reactive models with many adjustable fit parameters (e.g. ReaxFF) and machine learning models.

Non-parametric potentials edit

It should first be noted that non-parametric potentials are often referred to as "machine learning" potentials. While the descriptor/mapping forms of non-parametric models are closely related to machine learning in general and their complex nature make machine learning fitting optimizations almost necessary, differentiation is important in that parametric models can also be optimized using machine learning.

Current research in interatomic potentials involves using systematically improvable, non-parametric mathematical forms and increasingly complex machine learning methods. The total energy is then written

 
where  is a mathematical representation of the atomic environment surrounding the atom  , known as the descriptor.[53]   is a machine-learning model that provides a prediction for the energy of atom   based on the descriptor output. An accurate machine-learning potential requires both a robust descriptor and a suitable machine learning framework. The simplest descriptor is the set of interatomic distances from atom   to its neighbours, yielding a machine-learned pair potential. However, more complex many-body descriptors are needed to produce highly accurate potentials.[53] It is also possible to use a linear combination of multiple descriptors with associated machine-learning models.[54] Potentials have been constructed using a variety of machine-learning methods, descriptors, and mappings, including neural networks,[55] Gaussian process regression,[56][57] and linear regression.[58][16]

A non-parametric potential is most often trained to total energies, forces, and/or stresses obtained from quantum-level calculations, such as density functional theory, as with most modern potentials. However, the accuracy of a machine-learning potential can be converged to be comparable with the underlying quantum calculations, unlike analytical models. Hence, they are in general more accurate than traditional analytical potentials, but they are correspondingly less able to extrapolate. Further, owing to the complexity of the machine-learning model and the descriptors, they are computationally far more expensive than their analytical counterparts.

Non-parametric, machine learned potentials may also be combined with parametric, analytical potentials, for example to include known physics such as the screened Coulomb repulsion,[59] or to impose physical constraints on the predictions.[60]

Potential fitting edit

Since the interatomic potentials are approximations, they by necessity all involve parameters that need to be adjusted to some reference values. In simple potentials such as the Lennard-Jones and Morse ones, the parameters are interpretable and can be set to match e.g. the equilibrium bond length and bond strength of a dimer molecule or the surface energy of a solid .[61][62] Lennard-Jones potential can typically describe the lattice parameters, surface energies, and approximate mechanical properties.[63] Many-body potentials often contain tens or even hundreds of adjustable parameters with limited interpretability and no compatibility with common interatomic potentials for bonded molecules. Such parameter sets can be fit to a larger set of experimental data, or materials properties derived from less reliable data such as from density-functional theory.[64][65] For solids, a many-body potential can often describe the lattice constant of the equilibrium crystal structure, the cohesive energy, and linear elastic constants, as well as basic point defect properties of all the elements and stable compounds well, although deviations in surface energies often exceed 50%. [28][41][43][44][63][48] [66] [67] [68] Non-parametric potentials in turn contain hundreds or even thousands of independent parameters to fit. For any but the simplest model forms, sophisticated optimization and machine learning methods are necessary for useful potentials.

The aim of most potential functions and fitting is to make the potential transferable, i.e. that it can describe materials properties that are clearly different from those it was fitted to (for examples of potentials explicitly aiming for this, see e.g.[69][70][71][72][73]). Key aspects here are the correct representation of chemical bonding, validation of structures and energies, as well as interpretability of all parameters.[49] Full transferability and interpretability is reached with the Interface force field (IFF).[48] An example of partial transferability, a review of interatomic potentials of Si describes that Stillinger-Weber and Tersoff III potentials for Si can describe several (but not all) materials properties they were not fitted to.[14]

The NIST interatomic potential repository provides a collection of fitted interatomic potentials, either as fitted parameter values or numerical tables of the potential functions.[74] The OpenKIM [75] project also provides a repository of fitted potentials, along with collections of validation tests and a software framework for promoting reproducibility in molecular simulations using interatomic potentials.

Machine-Learned Interatomic Potentials edit

Since the 1990s, machine learning programs have been employed to construct interatomic potentials, mapping atomic structures to their potential energies. These are generally referred to as 'machine learning potentials' (MLPs)[76] or as 'machine-learned interatomic potentials' (MLIPs).[77] Such machine learning potentials help fill the gap between highly accurate but computationally intensive simulations like density functional theory and computationally lighter, but much less precise, empirical potentials. Early neural networks showed promise, but their inability to systematically account for interatomic energy interactions limited their applications to smaller, low-dimensional systems, keeping them largely within the confines of academia. However, with continuous advancements in artificial intelligence technology, machine learning methods have become significantly more accurate, positioning machine learning as a significant player in potential fitting.[78][79][80]

Modern neural networks have revolutionized the construction of highly accurate and computationally light potentials by integrating theoretical understanding of materials science into their architectures and preprocessing. Almost all are local, accounting for all interactions between an atom and its neighbor up to some cutoff radius. These neural networks usually intake atomic coordinates and output potential energies. Atomic coordinates are sometimes transformed with atom-centered symmetry functions or pair symmetry functions before being fed into neural networks. Encoding symmetry has been pivotal in enhancing machine learning potentials by drastically constraining the neural networks' search space.[78][81]

Conversely, Message-Passing Neural Networks (MPNNs), a form of graph neural networks, learn their own descriptors and symmetry encodings. They treat molecules as three-dimensional graphs and iteratively update each atom's feature vectors as information about neighboring atoms is processed through message functions and convolutions. These feature vectors are then used to directly predict the final potentials. In 2017, the first-ever MPNN model, a deep tensor neural network, was used to calculate the properties of small organic molecules. Advancements in this technology led to the development of Matlantis in 2022, which commercially applies machine learning potentials for new materials discovery.[82] Matlantis, which can simulate 72 elements, handle up to 20,000 atoms at a time, and execute calculations up to 20 million times faster than density functional theory with almost indistinguishable accuracy, showcases the power of machine learning potentials in the age of artificial intelligence.[78][83][84]

Another class of machine-learned interatomic potential is the Gaussian Approximation Potential (GAP),[85][86][87] which combines compact descriptors of local atomic environments[88] with Gaussian process regression[89] to machine learn the potential energy surface of a given system. To date, the GAP framework has been used to successfully develop a number of MLIPs for various systems, including for elemental systems such as Carbon[90] Silicon,[91] and Tungsten,[92] as well as for multicomponent systems such as Ge2Sb2Te5[93] and austenitic stainless steel, Fe7Cr2Ni.[94]

Reliability of interatomic potentials edit

Classical interatomic potentials often exceed the accuracy of simplified quantum mechanical methods such as density functional theory at a million times lower computational cost.[49] The use of interatomic potentials is recommended for the simulation of nanomaterials, biomacromolecules, and electrolytes from atoms up to millions of atoms at the 100 nm scale and beyond. As a limitation, electron densities and quantum processes at the local scale of hundreds of atoms are not included. When of interest, higher level quantum chemistry methods can be locally used.[95]

The robustness of a model at different conditions other than those used in the fitting process is often measured in terms of transferability of the potential.

See also edit

References edit

  1. ^ a b M. P. Allen and D. J. Tildesley. Computer Simulation of Liquids. Oxford University Press, Oxford, England, 1989.
  2. ^ Daan Frenkel and Berend Smit. Understanding molecular simulation: from algorithms to applications. Academic Press, San Diego, second edition, 2002.
  3. ^ a b c R. Lesar. Introduction to Computational Materials Science. Cambridge University Press, 2013.
  4. ^ Brenner, D.W. (2000). "The Art and Science of an Analytic Potential". Physica Status Solidi B. 217 (1): 23–40. Bibcode:2000PSSBR.217...23B. doi:10.1002/(SICI)1521-3951(200001)217:1<23::AID-PSSB23>3.0.CO;2-N. ISSN 0370-1972.
  5. ^ N. W. Ashcroft and N. D. Mermin. Solid State Physics.Saunders College, Philadelphia, 1976.
  6. ^ a b Charles Kittel. Introduction to Solid State Physics. John Wiley & Sons, New York, third edition, 1968.
  7. ^ a b Daw, Murray S.; Foiles, Stephen M.; Baskes, Michael I. (1993). "The embedded-atom method: a review of theory and applications". Materials Science Reports. 9 (7–8): 251–310. doi:10.1016/0920-2307(93)90001-U. ISSN 0920-2307.
  8. ^ Tersoff J (April 1988). "New empirical approach for the structure and energy of covalent systems". Physical Review B. 37 (12): 6991–7000. Bibcode:1988PhRvB..37.6991T. doi:10.1103/physrevb.37.6991. PMID 9943969.
  9. ^ FINNIS, M (2007). "Bond-order potentials through the ages". Progress in Materials Science. 52 (2–3): 133–153. doi:10.1016/j.pmatsci.2006.10.003. ISSN 0079-6425.
  10. ^ a b Sinnott, Susan B.; Brenner, Donald W. (2012). "Three decades of many-body potentials in materials research". MRS Bulletin. 37 (5): 469–473. Bibcode:2012MRSBu..37..469S. doi:10.1557/mrs.2012.88. ISSN 0883-7694.
  11. ^ Bedford NM, Ramezani-Dakhel H, Slocik JM, Briggs BD, Ren Y, Frenkel AI, et al. (May 2015). "Elucidation of peptide-directed palladium surface structure for biologically tunable nanocatalysts". ACS Nano. 9 (5): 5082–92. doi:10.1021/acsnano.5b00168. PMID 25905675.
  12. ^ Beardmore, Keith M.; Grønbech-Jensen, Niels (1 October 1999). "Direct simulation of ion-beam-induced stressing and amorphization of silicon". Physical Review B. 60 (18): 12610–12616. arXiv:cond-mat/9901319v2. Bibcode:1999PhRvB..6012610B. doi:10.1103/physrevb.60.12610. ISSN 0163-1829. S2CID 15494648.
  13. ^ Albe, Karsten; Nord, J.; Nordlund, K. (2009). "Dynamic charge-transfer bond-order potential for gallium nitride". Philosophical Magazine. 89 (34–36): 3477–3497. Bibcode:2009PMag...89.3477A. doi:10.1080/14786430903313708. ISSN 1478-6435. S2CID 56072359.
  14. ^ a b Balamane H, Halicioglu T, Tiller WA (July 1992). "Comparative study of silicon empirical interatomic potentials". Physical Review B. 46 (4): 2250–2279. Bibcode:1992PhRvB..46.2250B. doi:10.1103/physrevb.46.2250. PMID 10003901.
  15. ^ Plimpton SJ, Thompson AP (2012). "Computational aspects of many-body potentials". MRS Bull. 37 (5): 513–521. Bibcode:2012MRSBu..37..513P. doi:10.1557/mrs.2012.96. S2CID 138567968.
  16. ^ a b Shapeev, Alexander V. (2016-09-13). "Moment Tensor Potentials: A Class of Systematically Improvable Interatomic Potentials". Multiscale Modeling & Simulation. 14 (3): 1153–1173. arXiv:1512.06054. doi:10.1137/15M1054183. ISSN 1540-3459. S2CID 28970251.
  17. ^ Lennard-Jones, J. E. (1924). "On the Determination of Molecular Fields". Proc. R. Soc. Lond. A. 106 (738): 463–477. Bibcode:1924RSPSA.106..463J. doi:10.1098/rspa.1924.0082..
  18. ^ Stephan, Simon; Thol, Monika; Vrabec, Jadran; Hasse, Hans (2019-10-28). "Thermophysical Properties of the Lennard-Jones Fluid: Database and Data Assessment". Journal of Chemical Information and Modeling. 59 (10): 4248–4265. doi:10.1021/acs.jcim.9b00620. ISSN 1549-9596. PMID 31609113. S2CID 204545481.
  19. ^ a b Stephan, Simon; Horsch, Martin T.; Vrabec, Jadran; Hasse, Hans (2019-07-03). "MolMod – an open access database of force fields for molecular simulations of fluids". Molecular Simulation. 45 (10): 806–814. arXiv:1904.05206. doi:10.1080/08927022.2019.1601191. ISSN 0892-7022. S2CID 119199372.
  20. ^ Girifalco, L. A.; Weizer, V. G. (1 April 1959). "Application of the Morse Potential Function to Cubic Metals". Physical Review. 114 (3): 687–690. Bibcode:1959PhRv..114..687G. doi:10.1103/physrev.114.687. hdl:10338.dmlcz/103074. ISSN 0031-899X.
  21. ^ Feuston, B. P.; Garofalini, S. H. (1988). "Empirical three-body potential for vitreous silica". The Journal of Chemical Physics. 89 (9): 5818–5824. Bibcode:1988JChPh..89.5818F. doi:10.1063/1.455531. ISSN 0021-9606.
  22. ^ J. F. Ziegler, J. P. Biersack, and U. Littmark. The Stopping and Range of Ions in Matter. Pergamon, New York, 1985.
  23. ^ Nordlund, K.; Runeberg, N.; Sundholm, D. (1997). "Repulsive interatomic potentials calculated using Hartree-Fock and density-functional theory methods". Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms. 132 (1): 45–54. Bibcode:1997NIMPB.132...45N. doi:10.1016/s0168-583x(97)00447-3. ISSN 0168-583X.
  24. ^ Stillinger FH, Weber TA (April 1985). "Computer simulation of local order in condensed phases of silicon". Physical Review B. 31 (8): 5262–5271. Bibcode:1985PhRvB..31.5262S. doi:10.1103/physrevb.31.5262. PMID 9936488.
  25. ^ Ichimura, M. (16 February 1996). "Stillinger-Weber potentials for III–V compound semiconductors and their application to the critical thickness calculation for InAs/GaAs". Physica Status Solidi A. 153 (2): 431–437. Bibcode:1996PSSAR.153..431I. doi:10.1002/pssa.2211530217. ISSN 0031-8965.
  26. ^ Ohta, H.; Hamaguchi, S. (2001). "Classical interatomic potentials for si-o-f and si-o-cl systems" (PDF). Journal of Chemical Physics. 115 (14): 6679–90. Bibcode:2001JChPh.115.6679O. doi:10.1063/1.1400789. hdl:2433/50272.
  27. ^ Bazant, M. Z.; Kaxiras, E.; Justo, J. F. (1997). "Environment-dependent interatomic potential for bulk silicon". Phys. Rev. B. 56 (14): 8542. arXiv:cond-mat/9704137. Bibcode:1997PhRvB..56.8542B. doi:10.1103/PhysRevB.56.8542. S2CID 17860100.
  28. ^ a b Justo, João F.; Bazant, Martin Z.; Kaxiras, Efthimios; Bulatov, V. V.; Yip, Sidney (1 July 1998). "Interatomic potential for silicon defects and disordered phases". Physical Review B. 58 (5): 2539–2550. arXiv:cond-mat/9712058. Bibcode:1998PhRvB..58.2539J. doi:10.1103/physrevb.58.2539. ISSN 0163-1829. S2CID 14585375.
  29. ^ Foiles SM, Baskes MI, Daw MS (June 1986). "Embedded-atom-method functions for the fcc metals Cu, Ag, Au, Ni, Pd, Pt, and their alloys". Physical Review B. 33 (12): 7983–7991. Bibcode:1986PhRvB..33.7983F. doi:10.1103/physrevb.33.7983. PMID 9938188.
  30. ^ Foiles, S. M.; Baskes, M. I.; Daw, M. S. (15 June 1988). "Erratum: Embedded-atom-method functions for the fcc metals Cu, Ag, Au, Ni, Pd, Pt, and their alloys". Physical Review B. 37 (17): 10378. doi:10.1103/physrevb.37.10378. ISSN 0163-1829.
  31. ^ Puska, M. J.; Nieminen, R. M.; Manninen, M. (15 September 1981). "Atoms embedded in an electron gas: Immersion energies". Physical Review B. 24 (6): 3037–3047. Bibcode:1981PhRvB..24.3037P. doi:10.1103/physrevb.24.3037. ISSN 0163-1829.
  32. ^ Finnis, M. W.; Sinclair, J. E. (1984). "A simple empirical N-body potential for transition metals". Philosophical Magazine A. 50 (1): 45–55. Bibcode:1984PMagA..50...45F. doi:10.1080/01418618408244210. ISSN 0141-8610.
  33. ^ "Erratum". Philosophical Magazine A. 53 (1): 161. 1986. Bibcode:1986PMagA..53..161.. doi:10.1080/01418618608242815. ISSN 0141-8610.
  34. ^ Cleri F, Rosato V (July 1993). "Tight-binding potentials for transition metals and alloys". Physical Review B. 48 (1): 22–33. Bibcode:1993PhRvB..48...22C. doi:10.1103/physrevb.48.22. PMID 10006745.
  35. ^ Kelchner, Cynthia L.; Halstead, David M.; Perkins, Leslie S.; Wallace, Nora M.; DePristo, Andrew E. (1994). "Construction and evaluation of embedding functions". Surface Science. 310 (1–3): 425–435. Bibcode:1994SurSc.310..425K. doi:10.1016/0039-6028(94)91405-2. ISSN 0039-6028.
  36. ^ Dudarev, S L; Derlet, P M (17 October 2005). "A 'magnetic' interatomic potential for molecular dynamics simulations". Journal of Physics: Condensed Matter. 17 (44): 7097–7118. Bibcode:2005JPCM...17.7097D. doi:10.1088/0953-8984/17/44/003. ISSN 0953-8984. S2CID 123141962.
  37. ^ Olsson, Pär; Wallenius, Janne; Domain, Christophe; Nordlund, Kai; Malerba, Lorenzo (21 December 2005). "Two-band modeling of α-prime phase formation in Fe-Cr". Physical Review B. 72 (21): 214119. Bibcode:2005PhRvB..72u4119O. doi:10.1103/physrevb.72.214119. ISSN 1098-0121. S2CID 16118006.
  38. ^ Tersoff J (April 1988). "New empirical approach for the structure and energy of covalent systems". Physical Review B. 37 (12): 6991–7000. Bibcode:1988PhRvB..37.6991T. doi:10.1103/PhysRevB.37.6991. PMID 9943969.
  39. ^ Brenner DW (November 1990). "Empirical potential for hydrocarbons for use in simulating the chemical vapor deposition of diamond films". Physical Review B. 42 (15): 9458–9471. Bibcode:1990PhRvB..42.9458B. doi:10.1103/PhysRevB.42.9458. PMID 9995183.
  40. ^ Brenner DW (August 1989). "Relationship between the embedded-atom method and Tersoff potentials". Physical Review Letters. 63 (9): 1022. Bibcode:1989PhRvL..63.1022B. doi:10.1103/PhysRevLett.63.1022. PMID 10041250.
  41. ^ a b c Albe, Karsten; Nordlund, Kai; Averback, Robert S. (2002). "Modeling the metal-semiconductor interaction: Analytical bond-order potential for platinum-carbon". Physical Review B. 65 (19): 195124. Bibcode:2002PhRvB..65s5124A. doi:10.1103/PhysRevB.65.195124. ISSN 0163-1829.
  42. ^ de Brito Mota, F.; Justo, J. F.; Fazzio, A. (1998). "Structural properties of amorphous silicon nitride". Phys. Rev. B. 58 (13): 8323. Bibcode:1998PhRvB..58.8323D. doi:10.1103/PhysRevB.58.8323.
  43. ^ a b Juslin, N.; Erhart, P.; Träskelin, P.; Nord, J.; Henriksson, K. O. E.; Nordlund, K.; Salonen, E.; Albe, K. (15 December 2005). "Analytical interatomic potential for modeling nonequilibrium processes in the W–C–H system". Journal of Applied Physics. 98 (12): 123520–123520–12. Bibcode:2005JAP....98l3520J. doi:10.1063/1.2149492. ISSN 0021-8979. S2CID 8090449.
  44. ^ a b Erhart, Paul; Juslin, Niklas; Goy, Oliver; Nordlund, Kai; Müller, Ralf; Albe, Karsten (30 June 2006). "Analytic bond-order potential for atomistic simulations of zinc oxide". Journal of Physics: Condensed Matter. 18 (29): 6585–6605. Bibcode:2006JPCM...18.6585E. doi:10.1088/0953-8984/18/29/003. ISSN 0953-8984. S2CID 38072718.
  45. ^ Baskes MI (December 1987). "Application of the embedded-atom method to covalent materials: A semiempirical potential for silicon". Physical Review Letters. 59 (23): 2666–2669. Bibcode:1987PhRvL..59.2666B. doi:10.1103/PhysRevLett.59.2666. PMID 10035617.
  46. ^ Baskes MI (August 1992). "Modified embedded-atom potentials for cubic materials and impurities". Physical Review B. 46 (5): 2727–2742. Bibcode:1992PhRvB..46.2727B. doi:10.1103/PhysRevB.46.2727. PMID 10003959.
  47. ^ Lee, Byeong-Joo; Baskes, M. I. (2000-10-01). "Second nearest-neighbor modified embedded-atom-method potential". Physical Review B. 62 (13): 8564–8567. Bibcode:2000PhRvB..62.8564L. doi:10.1103/PhysRevB.62.8564.
  48. ^ a b c d Heinz H, Lin TJ, Mishra RK, Emami FS (February 2013). "Thermodynamically consistent force fields for the assembly of inorganic, organic, and biological nanostructures: the INTERFACE force field". Langmuir. 29 (6): 1754–65. doi:10.1021/la3038846. PMID 23276161.
  49. ^ a b c Heinz H, Ramezani-Dakhel H (January 2016). "Simulations of inorganic-bioorganic interfaces to discover new materials: insights, comparisons to experiment, challenges, and opportunities". Chemical Society Reviews. 45 (2): 412–48. doi:10.1039/c5cs00890e. PMID 26750724.
  50. ^ Mishra, Ratan K.; Mohamed, Aslam Kunhi; Geissbühler, David; Manzano, Hegoi; Jamil, Tariq; Shahsavari, Rouzbeh; Kalinichev, Andrey G.; Galmarini, Sandra; Tao, Lei; Heinz, Hendrik; Pellenq, Roland (December 2017). "A force field database for cementitious materials including validations, applications and opportunities". Cement and Concrete Research. 102: 68–89. doi:10.1016/j.cemconres.2017.09.003.
  51. ^ Wang J, Wolf RM, Caldwell JW, Kollman PA, Case DA (July 2004). "Development and testing of a general amber force field". Journal of Computational Chemistry. 25 (9): 1157–74. doi:10.1002/jcc.20035. PMID 15116359. S2CID 18734898.
  52. ^ Huang J, MacKerell AD (September 2013). "CHARMM36 all-atom additive protein force field: validation based on comparison to NMR data". Journal of Computational Chemistry. 34 (25): 2135–45. doi:10.1002/jcc.23354. PMC 3800559. PMID 23832629.
  53. ^ a b Bartók, Albert P.; Kondor, Risi; Csányi, Gábor (2013-05-28). "On representing chemical environments". Physical Review B. 87 (18): 184115. arXiv:1209.3140. Bibcode:2013PhRvB..87r4115B. doi:10.1103/PhysRevB.87.184115. ISSN 1098-0121. S2CID 118375156.
  54. ^ Deringer, Volker L.; Csányi, Gábor (2017-03-03). "Machine learning based interatomic potential for amorphous carbon". Physical Review B. 95 (9): 094203. arXiv:1611.03277. Bibcode:2017PhRvB..95i4203D. doi:10.1103/PhysRevB.95.094203. ISSN 2469-9950. S2CID 55190594.
  55. ^ Behler J, Parrinello M (April 2007). "Generalized neural-network representation of high-dimensional potential-energy surfaces". Physical Review Letters. 98 (14): 146401. Bibcode:2007PhRvL..98n6401B. doi:10.1103/PhysRevLett.98.146401. PMID 17501293.
  56. ^ Bartók AP, Payne MC, Kondor R, Csányi G (April 2010). "Gaussian approximation potentials: the accuracy of quantum mechanics, without the electrons". Physical Review Letters. 104 (13): 136403. arXiv:0910.1019. Bibcode:2010PhRvL.104m6403B. doi:10.1103/PhysRevLett.104.136403. PMID 20481899. S2CID 15918457.
  57. ^ Dragoni, Daniele; Daff, Thomas D.; Csányi, Gábor; Marzari, Nicola (2018-01-30). "Achieving DFT accuracy with a machine-learning interatomic potential: Thermomechanics and defects in bcc ferromagnetic iron". Physical Review Materials. 2 (1): 013808. arXiv:1706.10229. Bibcode:2018PhRvM...2a3808D. doi:10.1103/PhysRevMaterials.2.013808. hdl:10281/231112. S2CID 119252567.
  58. ^ Thompson, A.P.; Swiler, L.P.; Trott, C.R.; Foiles, S.M.; Tucker, G.J. (2015-03-15). "Spectral neighbor analysis method for automated generation of quantum-accurate interatomic potentials". Journal of Computational Physics. 285: 316–330. arXiv:1409.3880. Bibcode:2015JCoPh.285..316T. doi:10.1016/j.jcp.2014.12.018.
  59. ^ Byggmästar, J.; Hamedani, A.; Nordlund, K.; Djurabekova, F. (2019-10-17). "Machine-learning interatomic potential for radiation damage and defects in tungsten". Physical Review B. 100 (14): 144105. arXiv:1908.07330. Bibcode:2019PhRvB.100n4105B. doi:10.1103/PhysRevB.100.144105. hdl:10138/306660. S2CID 201106123.
  60. ^ Pun GP, Batra R, Ramprasad R, Mishin Y (May 2019). "Physically informed artificial neural networks for atomistic modeling of materials". Nature Communications. 10 (1): 2339. Bibcode:2019NatCo..10.2339P. doi:10.1038/s41467-019-10343-5. PMC 6538760. PMID 31138813.
  61. ^ Heinz, Hendrik; Vaia, R. A.; Farmer, B. L.; Naik, R. R. (2008-10-09). "Accurate Simulation of Surfaces and Interfaces of Face-Centered Cubic Metals Using 12−6 and 9−6 Lennard-Jones Potentials". The Journal of Physical Chemistry C. 112 (44): 17281–17290. doi:10.1021/jp801931d. ISSN 1932-7447.
  62. ^ Liu, Juan; Tennessen, Emrys; Miao, Jianwei; Huang, Yu; Rondinelli, James M.; Heinz, Hendrik (2018-05-31). "Understanding Chemical Bonding in Alloys and the Representation in Atomistic Simulations". The Journal of Physical Chemistry C. 122 (26): 14996–15009. doi:10.1021/acs.jpcc.8b01891. ISSN 1932-7447. S2CID 51855788.
  63. ^ a b Nathanson M, Kanhaiya K, Pryor A, Miao J, Heinz H (December 2018). "Atomic-Scale Structure and Stress Release Mechanism in Core-Shell Nanoparticles". ACS Nano. 12 (12): 12296–12304. doi:10.1021/acsnano.8b06118. PMID 30457827. S2CID 53764446.
  64. ^ Ruiz, Victor G.; Liu, Wei; Tkatchenko, Alexandre (2016-01-15). "Density-functional theory with screened van der Waals interactions applied to atomic and molecular adsorbates on close-packed and non-close-packed surfaces". Physical Review B. 93 (3): 035118. Bibcode:2016PhRvB..93c5118R. doi:10.1103/physrevb.93.035118. hdl:11858/00-001M-0000-0029-3035-8. ISSN 2469-9950.
  65. ^ Ruiz VG, Liu W, Zojer E, Scheffler M, Tkatchenko A (April 2012). "Density-functional theory with screened van der Waals interactions for the modeling of hybrid inorganic-organic systems". Physical Review Letters. 108 (14): 146103. Bibcode:2012PhRvL.108n6103R. doi:10.1103/physrevlett.108.146103. hdl:11858/00-001M-0000-000F-C6EA-3. PMID 22540809.
  66. ^ Ercolessi, F; Adams, J. B (10 June 1994). "Interatomic Potentials from First-Principles Calculations: The Force-Matching Method". Europhysics Letters (EPL). 26 (8): 583–588. arXiv:cond-mat/9306054. Bibcode:1994EL.....26..583E. doi:10.1209/0295-5075/26/8/005. ISSN 0295-5075. S2CID 18043298.
  67. ^ Mishin, Y.; Mehl, M. J.; Papaconstantopoulos, D. A. (12 June 2002). "Embedded-atom potential forB2−NiAl". Physical Review B. 65 (22): 224114. Bibcode:2002PhRvB..65v4114M. doi:10.1103/physrevb.65.224114. ISSN 0163-1829.
  68. ^ Beardmore, Keith; Smith, Roger (1996). "Empirical potentials for C-Si-H systems with application to C60 interactions with Si crystal surfaces". Philosophical Magazine A. 74 (6): 1439–1466. Bibcode:1996PMagA..74.1439B. doi:10.1080/01418619608240734. ISSN 0141-8610.
  69. ^ Mishra, Ratan K.; Flatt, Robert J.; Heinz, Hendrik (2013-04-19). "Force Field for Tricalcium Silicate and Insight into Nanoscale Properties: Cleavage, Initial Hydration, and Adsorption of Organic Molecules". The Journal of Physical Chemistry C. 117 (20): 10417–10432. doi:10.1021/jp312815g. ISSN 1932-7447.
  70. ^ Ramezani-Dakhel, Hadi; Ruan, Lingyan; Huang, Yu; Heinz, Hendrik (2015-01-21). "Molecular Mechanism of Specific Recognition of Cubic Pt Nanocrystals by Peptides and of the Concentration-Dependent Formation from Seed Crystals". Advanced Functional Materials. 25 (9): 1374–1384. doi:10.1002/adfm.201404136. ISSN 1616-301X. S2CID 94001655.
  71. ^ Chen J, Zhu E, Liu J, Zhang S, Lin Z, Duan X, et al. (December 2018). "Building two-dimensional materials one row at a time: Avoiding the nucleation barrier". Science. 362 (6419): 1135–1139. Bibcode:2018Sci...362.1135C. doi:10.1126/science.aau4146. PMID 30523105. S2CID 54456982.
  72. ^ Swamy, Varghese; Gale, Julian D. (1 August 2000). "Transferable variable-charge interatomic potential for atomistic simulation of titanium oxides". Physical Review B. 62 (9): 5406–5412. Bibcode:2000PhRvB..62.5406S. doi:10.1103/physrevb.62.5406. ISSN 0163-1829.
  73. ^ Aguado, Andrés; Bernasconi, Leonardo; Madden, Paul A. (2002). "A transferable interatomic potential for MgO from ab initio molecular dynamics". Chemical Physics Letters. 356 (5–6): 437–444. Bibcode:2002CPL...356..437A. doi:10.1016/s0009-2614(02)00326-3. ISSN 0009-2614.
  74. ^ Technology, U.S. Department of Commerce, National Institute of Standards and. "Interatomic Potentials Repository Project". www.ctcms.nist.gov.{{cite web}}: CS1 maint: multiple names: authors list (link)
  75. ^ "Open Knowledgebase of Interatomic Models (OpenKIM)".
  76. ^ Behler, Jörg; Csányi, Gábor (2021-07-19). "Machine learning potentials for extended systems: a perspective". The European Physical Journal B. 94 (7): 142. Bibcode:2021EPJB...94..142B. doi:10.1140/epjb/s10051-021-00156-1. ISSN 1434-6036.
  77. ^ Rosenbrock, Conrad W.; Gubaev, Konstantin; Shapeev, Alexander V.; Pártay, Livia B.; Bernstein, Noam; Csányi, Gábor; Hart, Gus L. W. (2021-01-29). "Machine-learned interatomic potentials for alloys and alloy phase diagrams". npj Computational Materials. 7 (1): 24. arXiv:1906.07816. Bibcode:2021npjCM...7...24R. doi:10.1038/s41524-020-00477-2. ISSN 2057-3960.
  78. ^ a b c Kocer, Emir; Ko, Tsz Wai; Behler, Jorg (2022). "Neural Network Potentials: A Concise Overview of Methods". Annual Review of Physical Chemistry. 73: 163–86. arXiv:2107.03727. Bibcode:2022ARPC...73..163K. doi:10.1146/annurev-physchem-082720-034254. PMID 34982580. S2CID 235765258.
  79. ^ Blank, TB; Brown, SD; Calhoun, AW; Doren, DJ (1995). "Neural network models of potential energy surfaces". The Journal of Chemical Physics. 103 (10): 4129–37. Bibcode:1995JChPh.103.4129B. doi:10.1063/1.469597.
  80. ^ Rosenbrock, Conrad W.; Gubaev, Konstantin; Shapeev, Alexander V.; Pártay, Livia B.; Bernstein, Noam; Csányi, Gábor; Hart, Gus L. W. (2021-01-29). "Machine-learned interatomic potentials for alloys and alloy phase diagrams". npj Computational Materials. 7 (1): 24. arXiv:1906.07816. Bibcode:2021npjCM...7...24R. doi:10.1038/s41524-020-00477-2. ISSN 2057-3960.
  81. ^ Behler, J; Parrinello, M (2007). "Generalized neural-network representation of high-dimensional potential-energy surfaces". Physical Review Letters. 148 (14): 146401. Bibcode:2007PhRvL..98n6401B. doi:10.1103/PhysRevLett.98.146401. PMID 17501293.
  82. ^ Schutt, KT; Arbabzadah, F; Chmiela, S; Muller, KR; Tkatchenko, A (2017). "Quantum-chemical insights from deep tensor neural networks". Nature Communications. 8: 13890. arXiv:1609.08259. Bibcode:2017NatCo...813890S. doi:10.1038/ncomms13890. PMC 5228054. PMID 28067221.
  83. ^ Takamoto, So; Shinagawa, Chikashi; Motoki, Daisuke; Nakago, Kosuke (May 30, 2022). "Towards universal neural network potential for material discovery applicable to arbitrary combinations of 45 elements". Nature Communications. 13 (1): 2991. arXiv:2106.14583. Bibcode:2022NatCo..13.2991T. doi:10.1038/s41467-022-30687-9. PMC 9151783. PMID 35637178.
  84. ^ "Matlantis".
  85. ^ Anonymous (2010-04-05). "Modeling sans electrons". Physics. 3 (13): s48. arXiv:0910.1019. Bibcode:2010PhRvL.104m6403B. doi:10.1103/PhysRevLett.104.136403. PMID 20481899.
  86. ^ Bartók, Albert P.; Payne, Mike C.; Kondor, Risi; Csányi, Gábor (2010-04-01). "Gaussian Approximation Potentials: The Accuracy of Quantum Mechanics, without the Electrons". Physical Review Letters. 104 (13): 136403. arXiv:0910.1019. Bibcode:2010PhRvL.104m6403B. doi:10.1103/PhysRevLett.104.136403. PMID 20481899.
  87. ^ Bartók, Albert P.; De, Sandip; Poelking, Carl; Bernstein, Noam; Kermode, James R.; Csányi, Gábor; Ceriotti, Michele (December 2017). "Machine learning unifies the modeling of materials and molecules". Science Advances. 3 (12): e1701816. arXiv:1706.00179. Bibcode:2017SciA....3E1816B. doi:10.1126/sciadv.1701816. ISSN 2375-2548. PMC 5729016. PMID 29242828.
  88. ^ Bartók, Albert P.; Kondor, Risi; Csányi, Gábor (2013-05-28). "On representing chemical environments". Physical Review B. 87 (18): 184115. arXiv:1209.3140. Bibcode:2013PhRvB..87r4115B. doi:10.1103/PhysRevB.87.184115.
  89. ^ Rasmussen, Carl Edward; Williams, Christopher K. I. (2008). Gaussian processes for machine learning. Adaptive computation and machine learning (3. print ed.). Cambridge, Mass.: MIT Press. ISBN 978-0-262-18253-9.
  90. ^ Deringer, Volker L.; Csányi, Gábor (2017-03-03). "Machine learning based interatomic potential for amorphous carbon". Physical Review B. 95 (9): 094203. arXiv:1611.03277. Bibcode:2017PhRvB..95i4203D. doi:10.1103/PhysRevB.95.094203.
  91. ^ Bartók, Albert P.; Kermode, James; Bernstein, Noam; Csányi, Gábor (2018-12-14). "Machine Learning a General-Purpose Interatomic Potential for Silicon". Physical Review X. 8 (4): 041048. arXiv:1805.01568. Bibcode:2018PhRvX...8d1048B. doi:10.1103/PhysRevX.8.041048.
  92. ^ Szlachta, Wojciech J.; Bartók, Albert P.; Csányi, Gábor (2014-09-24). "Accuracy and transferability of Gaussian approximation potential models for tungsten". Physical Review B. 90 (10): 104108. Bibcode:2014PhRvB..90j4108S. doi:10.1103/PhysRevB.90.104108.
  93. ^ Mocanu, Felix C.; Konstantinou, Konstantinos; Lee, Tae Hoon; Bernstein, Noam; Deringer, Volker L.; Csányi, Gábor; Elliott, Stephen R. (2018-09-27). "Modeling the Phase-Change Memory Material, Ge 2 Sb 2 Te 5 , with a Machine-Learned Interatomic Potential". The Journal of Physical Chemistry B. 122 (38): 8998–9006. doi:10.1021/acs.jpcb.8b06476. ISSN 1520-6106. PMID 30173522.
  94. ^ Shenoy, Lakshmi; Woodgate, Christopher D.; Staunton, Julie B.; Bartók, Albert P.; Becquart, Charlotte S.; Domain, Christophe; Kermode, James R. (2024-03-22). "Collinear-spin machine learned interatomic potential for ${\mathrm{Fe}}_{7}{\mathrm{Cr}}_{2}\mathrm{Ni}$ alloy". Physical Review Materials. 8 (3): 033804. arXiv:2309.08689. doi:10.1103/PhysRevMaterials.8.033804.
  95. ^ Acevedo O, Jorgensen WL (January 2010). "Advances in quantum and molecular mechanical (QM/MM) simulations for organic and enzymatic reactions". Accounts of Chemical Research. 43 (1): 142–51. doi:10.1021/ar900171c. PMC 2880334. PMID 19728702.

External links edit

  • NIST interatomic potential repository
  • NIST JARVIS-FF
  • Open Knowledgebase of Interatomic Models (OpenKIM)

interatomic, potential, mathematical, functions, calculate, potential, energy, system, atoms, with, given, positions, space, widely, used, physical, basis, molecular, mechanics, molecular, dynamics, simulations, computational, chemistry, computational, physics. Interatomic potentials are mathematical functions to calculate the potential energy of a system of atoms with given positions in space 1 2 3 4 Interatomic potentials are widely used as the physical basis of molecular mechanics and molecular dynamics simulations in computational chemistry computational physics and computational materials science to explain and predict materials properties Examples of quantitative properties and qualitative phenomena that are explored with interatomic potentials include lattice parameters surface energies interfacial energies adsorption cohesion thermal expansion and elastic and plastic material behavior as well as chemical reactions 5 6 7 8 9 10 11 Typical shape of an interatomic pair potential Contents 1 Functional form 2 Force calculation 3 Classes of interatomic potentials 3 1 Parametric potentials 3 1 1 Pair potentials 3 1 1 1 Repulsive potentials 3 1 2 Many body potentials 3 1 2 1 Force fields 3 2 Non parametric potentials 4 Potential fitting 5 Machine Learned Interatomic Potentials 6 Reliability of interatomic potentials 7 See also 8 References 9 External linksFunctional form editInteratomic potentials can be written as a series expansion of functional terms that depend on the position of one two three etc atoms at a time Then the total potential of the system V displaystyle textstyle V mathrm nbsp can be written as 3 V i 1 N V 1 r i i j 1 N V 2 r i r j i j k 1 N V 3 r i r j r k displaystyle V mathrm sum i 1 N V 1 vec r i sum i j 1 N V 2 vec r i vec r j sum i j k 1 N V 3 vec r i vec r j vec r k cdots nbsp dd Here V 1 displaystyle textstyle V 1 nbsp is the one body term V 2 displaystyle textstyle V 2 nbsp the two body term V 3 displaystyle textstyle V 3 nbsp the three body term N displaystyle textstyle N nbsp the number of atoms in the system r i displaystyle vec r i nbsp the position of atom i displaystyle i nbsp etc i displaystyle i nbsp j displaystyle j nbsp and k displaystyle k nbsp are indices that loop over atom positions Note that in case the pair potential is given per atom pair in the two body term the potential should be multiplied by 1 2 as otherwise each bond is counted twice and similarly the three body term by 1 6 3 Alternatively the summation of the pair term can be restricted to cases i lt j displaystyle textstyle i lt j nbsp and similarly for the three body term i lt j lt k displaystyle textstyle i lt j lt k nbsp if the potential form is such that it is symmetric with respect to exchange of the j displaystyle j nbsp and k displaystyle k nbsp indices this may not be the case for potentials for multielemental systems The one body term is only meaningful if the atoms are in an external field e g an electric field In the absence of external fields the potential V displaystyle V nbsp should not depend on the absolute position of atoms but only on the relative positions This means that the functional form can be rewritten as a function of interatomic distances r i j r i r j displaystyle textstyle r ij vec r i vec r j nbsp and angles between the bonds vectors to neighbours 8 i j k displaystyle textstyle theta ijk nbsp Then in the absence of external forces the general form becomes V T O T i j N V 2 r i j i j k N V 3 r i j r i k 8 i j k displaystyle V mathrm TOT sum i j N V 2 r ij sum i j k N V 3 r ij r ik theta ijk cdots nbsp dd In the three body term V 3 displaystyle textstyle V 3 nbsp the interatomic distance r j k displaystyle textstyle r jk nbsp is not needed since the three terms r i j r i k 8 i j k displaystyle textstyle r ij r ik theta ijk nbsp are sufficient to give the relative positions of three atoms i j k displaystyle i j k nbsp in three dimensional space Any terms of order higher than 2 are also called many body potentials In some interatomic potentials the many body interactions are embedded into the terms of a pair potential see discussion on EAM like and bond order potentials below In principle the sums in the expressions run over all N displaystyle N nbsp atoms However if the range of the interatomic potential is finite i e the potentials V r 0 displaystyle textstyle V r equiv 0 nbsp above some cutoff distance r c u t displaystyle textstyle r mathrm cut nbsp the summing can be restricted to atoms within the cutoff distance of each other By also using a cellular method for finding the neighbours 1 the MD algorithm can be an O N algorithm Potentials with an infinite range can be summed up efficiently by Ewald summation and its further developments Force calculation editThe forces acting between atoms can be obtained by differentiation of the total energy with respect to atom positions That is to get the force on atom i displaystyle i nbsp one should take the three dimensional derivative gradient of the potential V tot displaystyle V text tot nbsp with respect to the position of atom i displaystyle i nbsp F i r i V T O T displaystyle vec F i nabla vec r i V mathrm TOT nbsp dd For two body potentials this gradient reduces thanks to the symmetry with respect to i j displaystyle ij nbsp in the potential form to straightforward differentiation with respect to the interatomic distances r i j displaystyle textstyle r ij nbsp However for many body potentials three body four body etc the differentiation becomes considerably more complex 12 13 since the potential may not be any longer symmetric with respect to i j displaystyle ij nbsp exchange In other words also the energy of atoms k displaystyle k nbsp that are not direct neighbours of i displaystyle i nbsp can depend on the position r i displaystyle textstyle vec r i nbsp because of angular and other many body terms and hence contribute to the gradient r k displaystyle textstyle nabla vec r k nbsp Classes of interatomic potentials editInteratomic potentials come in many different varieties with different physical motivations Even for single well known elements such as silicon a wide variety of potentials quite different in functional form and motivation have been developed 14 The true interatomic interactions are quantum mechanical in nature and there is no known way in which the true interactions described by the Schrodinger equation or Dirac equation for all electrons and nuclei could be cast into an analytical functional form Hence all analytical interatomic potentials are by necessity approximations Over time interatomic potentials have largely grown more complex and more accurate although this is not strictly true 15 This has included both increased descriptions of physics as well as added parameters Until recently all interatomic potentials could be described as parametric having been developed and optimized with a fixed number of physical terms and parameters New research focuses instead on non parametric potentials which can be systematically improvable by using complex local atomic neighbor descriptors and separate mappings to predict system properties such that the total number of terms and parameters are flexible 16 These non parametric models can be significantly more accurate but since they are not tied to physical forms and parameters there are many potential issues surrounding extrapolation and uncertainties Parametric potentials edit Pair potentials edit The arguably simplest widely used interatomic interaction model is the Lennard Jones potential 17 V L J r 4 e s r 12 s r 6 displaystyle V mathrm LJ r 4 varepsilon left left frac sigma r right 12 left frac sigma r right 6 right nbsp dd where e displaystyle textstyle varepsilon nbsp is the depth of the potential well and s displaystyle textstyle sigma nbsp is the distance at which the potential crosses zero The attractive term proportional to 1 r 6 displaystyle textstyle 1 r 6 nbsp in the potential comes from the scaling of van der Waals forces while the 1 r 12 displaystyle textstyle 1 r 12 nbsp repulsive term is much more approximate conveniently the square of the attractive term 6 On its own this potential is quantitatively accurate only for noble gases and has been extensively studied in the past decades 18 but is also widely used for qualitative studies and in systems where dipole interactions are significant particularly in chemistry force fields to describe intermolecular interactions especially in fluids 19 Another simple and widely used pair potential is the Morse potential which consists simply of a sum of two exponentials V M r D e e 2 a r r e 2 e a r r e displaystyle V mathrm M r D e e 2a r r e 2e a r r e nbsp dd Here D e displaystyle textstyle D e nbsp is the equilibrium bond energy and r e displaystyle textstyle r e nbsp the bond distance The Morse potential has been applied to studies of molecular vibrations and solids 20 and also inspired the functional form of more accurate potentials such as the bond order potentials Ionic materials are often described by a sum of a short range repulsive term such as the Buckingham pair potential and a long range Coulomb potential giving the ionic interactions between the ions forming the material The short range term for ionic materials can also be of many body character 21 Pair potentials have some inherent limitations such as the inability to describe all 3 elastic constants of cubic metals or correctly describe both cohesive energy and vacancy formation energy 7 Therefore quantitative molecular dynamics simulations are carried out with various of many body potentials Repulsive potentials edit For very short interatomic separations important in radiation material science the interactions can be described quite accurately with screened Coulomb potentials which have the general form V r i j 1 4 p e 0 Z 1 Z 2 e 2 r i j f r a displaystyle V r ij 1 over 4 pi varepsilon 0 Z 1 Z 2 e 2 over r ij varphi r a nbsp Here f r 1 displaystyle varphi r to 1 nbsp when r 0 displaystyle r to 0 nbsp Z 1 displaystyle Z 1 nbsp and Z 2 displaystyle Z 2 nbsp are the charges of the interacting nuclei and a displaystyle a nbsp is the so called screening parameter A widely used popular screening function is the Universal ZBL one 22 and more accurate ones can be obtained from all electron quantum chemistry calculations 23 In binary collision approximation simulations this kind of potential can be used to describe the nuclear stopping power Many body potentials edit The Stillinger Weber potential 24 is a potential that has a two body and three body terms of the standard form V T O T i j N V 2 r i j i j k N V 3 r i j r i k 8 i j k displaystyle V mathrm TOT sum i j N V 2 r ij sum i j k N V 3 r ij r ik theta ijk nbsp dd where the three body term describes how the potential energy changes with bond bending It was originally developed for pure Si but has been extended to many other elements and compounds 25 26 and also formed the basis for other Si potentials 27 28 Metals are very commonly described with what can be called EAM like potentials i e potentials that share the same functional form as the embedded atom model In these potentials the total potential energy is written V T O T i N F i j r r i j 1 2 i j N V 2 r i j displaystyle V mathrm TOT sum i N F i left sum j rho r ij right frac 1 2 sum i j N V 2 r ij nbsp dd where F i displaystyle textstyle F i nbsp is a so called embedding function not to be confused with the force F i displaystyle textstyle vec F i nbsp that is a function of the sum of the so called electron density r r i j displaystyle textstyle rho r ij nbsp V 2 displaystyle textstyle V 2 nbsp is a pair potential that usually is purely repulsive In the original formulation 29 30 the electron density function r r i j displaystyle textstyle rho r ij nbsp was obtained from true atomic electron densities and the embedding function was motivated from density functional theory as the energy needed to embed an atom into the electron density 31 However many other potentials used for metals share the same functional form but motivate the terms differently e g based on tight binding theory 32 33 34 or other motivations 35 36 37 EAM like potentials are usually implemented as numerical tables A collection of tables is available at the interatomic potential repository at NIST 1 Covalently bonded materials are often described by bond order potentials sometimes also called Tersoff like or Brenner like potentials 10 38 39 These have in general a form that resembles a pair potential V i j r i j V r e p u l s i v e r i j b i j k V a t t r a c t i v e r i j displaystyle V ij r ij V mathrm repulsive r ij b ijk V mathrm attractive r ij nbsp dd where the repulsive and attractive part are simple exponential functions similar to those in the Morse potential However the strength is modified by the environment of the atom i displaystyle i nbsp via the b i j k displaystyle b ijk nbsp term If implemented without an explicit angular dependence these potentials can be shown to be mathematically equivalent to some varieties of EAM like potentials 40 41 Thanks to this equivalence the bond order potential formalism has been implemented also for many metal covalent mixed materials 41 42 43 44 EAM potentials have also been extended to describe covalent bonding by adding angular dependent terms to the electron density function r displaystyle rho nbsp in what is called the modified embedded atom method MEAM 45 46 47 Force fields edit Main article Force field chemistry A force field is the collection of parameters to describe the physical interactions between atoms or physical units up to 108 using a given energy expression The term force field characterizes the collection of parameters for a given interatomic potential energy function and is often used within the computational chemistry community 48 The force field parameters make the difference between good and poor models Force fields are used for the simulation of metals ceramics molecules chemistry and biological systems covering the entire periodic table and multiphase materials Today s performance is among the best for solid state materials 49 50 molecular fluids 19 and for biomacromolecules 51 whereby biomacromolecules were the primary focus of force fields from the 1970s to the early 2000s Force fields range from relatively simple and interpretable fixed bond models e g Interface force field 48 CHARMM 52 and COMPASS to explicitly reactive models with many adjustable fit parameters e g ReaxFF and machine learning models Non parametric potentials edit It should first be noted that non parametric potentials are often referred to as machine learning potentials While the descriptor mapping forms of non parametric models are closely related to machine learning in general and their complex nature make machine learning fitting optimizations almost necessary differentiation is important in that parametric models can also be optimized using machine learning Current research in interatomic potentials involves using systematically improvable non parametric mathematical forms and increasingly complex machine learning methods The total energy is then writtenV T O T i N E q i displaystyle V mathrm TOT sum i N E mathbf q i nbsp where q i displaystyle mathbf q i nbsp is a mathematical representation of the atomic environment surrounding the atom i displaystyle i nbsp known as the descriptor 53 E displaystyle E nbsp is a machine learning model that provides a prediction for the energy of atom i displaystyle i nbsp based on the descriptor output An accurate machine learning potential requires both a robust descriptor and a suitable machine learning framework The simplest descriptor is the set of interatomic distances from atom i displaystyle i nbsp to its neighbours yielding a machine learned pair potential However more complex many body descriptors are needed to produce highly accurate potentials 53 It is also possible to use a linear combination of multiple descriptors with associated machine learning models 54 Potentials have been constructed using a variety of machine learning methods descriptors and mappings including neural networks 55 Gaussian process regression 56 57 and linear regression 58 16 A non parametric potential is most often trained to total energies forces and or stresses obtained from quantum level calculations such as density functional theory as with most modern potentials However the accuracy of a machine learning potential can be converged to be comparable with the underlying quantum calculations unlike analytical models Hence they are in general more accurate than traditional analytical potentials but they are correspondingly less able to extrapolate Further owing to the complexity of the machine learning model and the descriptors they are computationally far more expensive than their analytical counterparts Non parametric machine learned potentials may also be combined with parametric analytical potentials for example to include known physics such as the screened Coulomb repulsion 59 or to impose physical constraints on the predictions 60 Potential fitting editSince the interatomic potentials are approximations they by necessity all involve parameters that need to be adjusted to some reference values In simple potentials such as the Lennard Jones and Morse ones the parameters are interpretable and can be set to match e g the equilibrium bond length and bond strength of a dimer molecule or the surface energy of a solid 61 62 Lennard Jones potential can typically describe the lattice parameters surface energies and approximate mechanical properties 63 Many body potentials often contain tens or even hundreds of adjustable parameters with limited interpretability and no compatibility with common interatomic potentials for bonded molecules Such parameter sets can be fit to a larger set of experimental data or materials properties derived from less reliable data such as from density functional theory 64 65 For solids a many body potential can often describe the lattice constant of the equilibrium crystal structure the cohesive energy and linear elastic constants as well as basic point defect properties of all the elements and stable compounds well although deviations in surface energies often exceed 50 28 41 43 44 63 48 66 67 68 Non parametric potentials in turn contain hundreds or even thousands of independent parameters to fit For any but the simplest model forms sophisticated optimization and machine learning methods are necessary for useful potentials The aim of most potential functions and fitting is to make the potential transferable i e that it can describe materials properties that are clearly different from those it was fitted to for examples of potentials explicitly aiming for this see e g 69 70 71 72 73 Key aspects here are the correct representation of chemical bonding validation of structures and energies as well as interpretability of all parameters 49 Full transferability and interpretability is reached with the Interface force field IFF 48 An example of partial transferability a review of interatomic potentials of Si describes that Stillinger Weber and Tersoff III potentials for Si can describe several but not all materials properties they were not fitted to 14 The NIST interatomic potential repository provides a collection of fitted interatomic potentials either as fitted parameter values or numerical tables of the potential functions 74 The OpenKIM 75 project also provides a repository of fitted potentials along with collections of validation tests and a software framework for promoting reproducibility in molecular simulations using interatomic potentials Machine Learned Interatomic Potentials editMain article Machine learning potential Since the 1990s machine learning programs have been employed to construct interatomic potentials mapping atomic structures to their potential energies These are generally referred to as machine learning potentials MLPs 76 or as machine learned interatomic potentials MLIPs 77 Such machine learning potentials help fill the gap between highly accurate but computationally intensive simulations like density functional theory and computationally lighter but much less precise empirical potentials Early neural networks showed promise but their inability to systematically account for interatomic energy interactions limited their applications to smaller low dimensional systems keeping them largely within the confines of academia However with continuous advancements in artificial intelligence technology machine learning methods have become significantly more accurate positioning machine learning as a significant player in potential fitting 78 79 80 Modern neural networks have revolutionized the construction of highly accurate and computationally light potentials by integrating theoretical understanding of materials science into their architectures and preprocessing Almost all are local accounting for all interactions between an atom and its neighbor up to some cutoff radius These neural networks usually intake atomic coordinates and output potential energies Atomic coordinates are sometimes transformed with atom centered symmetry functions or pair symmetry functions before being fed into neural networks Encoding symmetry has been pivotal in enhancing machine learning potentials by drastically constraining the neural networks search space 78 81 Conversely Message Passing Neural Networks MPNNs a form of graph neural networks learn their own descriptors and symmetry encodings They treat molecules as three dimensional graphs and iteratively update each atom s feature vectors as information about neighboring atoms is processed through message functions and convolutions These feature vectors are then used to directly predict the final potentials In 2017 the first ever MPNN model a deep tensor neural network was used to calculate the properties of small organic molecules Advancements in this technology led to the development of Matlantis in 2022 which commercially applies machine learning potentials for new materials discovery 82 Matlantis which can simulate 72 elements handle up to 20 000 atoms at a time and execute calculations up to 20 million times faster than density functional theory with almost indistinguishable accuracy showcases the power of machine learning potentials in the age of artificial intelligence 78 83 84 Another class of machine learned interatomic potential is the Gaussian Approximation Potential GAP 85 86 87 which combines compact descriptors of local atomic environments 88 with Gaussian process regression 89 to machine learn the potential energy surface of a given system To date the GAP framework has been used to successfully develop a number of MLIPs for various systems including for elemental systems such as Carbon 90 Silicon 91 and Tungsten 92 as well as for multicomponent systems such as Ge2Sb2Te5 93 and austenitic stainless steel Fe7Cr2Ni 94 Reliability of interatomic potentials editClassical interatomic potentials often exceed the accuracy of simplified quantum mechanical methods such as density functional theory at a million times lower computational cost 49 The use of interatomic potentials is recommended for the simulation of nanomaterials biomacromolecules and electrolytes from atoms up to millions of atoms at the 100 nm scale and beyond As a limitation electron densities and quantum processes at the local scale of hundreds of atoms are not included When of interest higher level quantum chemistry methods can be locally used 95 The robustness of a model at different conditions other than those used in the fitting process is often measured in terms of transferability of the potential See also editComputational chemistry Computational materials science Molecular dynamics Force field chemistry References edit a b M P Allen and D J Tildesley Computer Simulation of Liquids Oxford University Press Oxford England 1989 Daan Frenkel and Berend Smit Understanding molecular simulation from algorithms to applications Academic Press San Diego second edition 2002 a b c R Lesar Introduction to Computational Materials Science Cambridge University Press 2013 Brenner D W 2000 The Art and Science of an Analytic Potential Physica Status Solidi B 217 1 23 40 Bibcode 2000PSSBR 217 23B doi 10 1002 SICI 1521 3951 200001 217 1 lt 23 AID PSSB23 gt 3 0 CO 2 N ISSN 0370 1972 N W Ashcroft and N D Mermin Solid State Physics Saunders College Philadelphia 1976 a b Charles Kittel Introduction to Solid State Physics John Wiley amp Sons New York third edition 1968 a b Daw Murray S Foiles Stephen M Baskes Michael I 1993 The embedded atom method a review of theory and applications Materials Science Reports 9 7 8 251 310 doi 10 1016 0920 2307 93 90001 U ISSN 0920 2307 Tersoff J April 1988 New empirical approach for the structure and energy of covalent systems Physical Review B 37 12 6991 7000 Bibcode 1988PhRvB 37 6991T doi 10 1103 physrevb 37 6991 PMID 9943969 FINNIS M 2007 Bond order potentials through the ages Progress in Materials Science 52 2 3 133 153 doi 10 1016 j pmatsci 2006 10 003 ISSN 0079 6425 a b Sinnott Susan B Brenner Donald W 2012 Three decades of many body potentials in materials research MRS Bulletin 37 5 469 473 Bibcode 2012MRSBu 37 469S doi 10 1557 mrs 2012 88 ISSN 0883 7694 Bedford NM Ramezani Dakhel H Slocik JM Briggs BD Ren Y Frenkel AI et al May 2015 Elucidation of peptide directed palladium surface structure for biologically tunable nanocatalysts ACS Nano 9 5 5082 92 doi 10 1021 acsnano 5b00168 PMID 25905675 Beardmore Keith M Gronbech Jensen Niels 1 October 1999 Direct simulation of ion beam induced stressing and amorphization of silicon Physical Review B 60 18 12610 12616 arXiv cond mat 9901319v2 Bibcode 1999PhRvB 6012610B doi 10 1103 physrevb 60 12610 ISSN 0163 1829 S2CID 15494648 Albe Karsten Nord J Nordlund K 2009 Dynamic charge transfer bond order potential for gallium nitride Philosophical Magazine 89 34 36 3477 3497 Bibcode 2009PMag 89 3477A doi 10 1080 14786430903313708 ISSN 1478 6435 S2CID 56072359 a b Balamane H Halicioglu T Tiller WA July 1992 Comparative study of silicon empirical interatomic potentials Physical Review B 46 4 2250 2279 Bibcode 1992PhRvB 46 2250B doi 10 1103 physrevb 46 2250 PMID 10003901 Plimpton SJ Thompson AP 2012 Computational aspects of many body potentials MRS Bull 37 5 513 521 Bibcode 2012MRSBu 37 513P doi 10 1557 mrs 2012 96 S2CID 138567968 a b Shapeev Alexander V 2016 09 13 Moment Tensor Potentials A Class of Systematically Improvable Interatomic Potentials Multiscale Modeling amp Simulation 14 3 1153 1173 arXiv 1512 06054 doi 10 1137 15M1054183 ISSN 1540 3459 S2CID 28970251 Lennard Jones J E 1924 On the Determination of Molecular Fields Proc R Soc Lond A 106 738 463 477 Bibcode 1924RSPSA 106 463J doi 10 1098 rspa 1924 0082 Stephan Simon Thol Monika Vrabec Jadran Hasse Hans 2019 10 28 Thermophysical Properties of the Lennard Jones Fluid Database and Data Assessment Journal of Chemical Information and Modeling 59 10 4248 4265 doi 10 1021 acs jcim 9b00620 ISSN 1549 9596 PMID 31609113 S2CID 204545481 a b Stephan Simon Horsch Martin T Vrabec Jadran Hasse Hans 2019 07 03 MolMod an open access database of force fields for molecular simulations of fluids Molecular Simulation 45 10 806 814 arXiv 1904 05206 doi 10 1080 08927022 2019 1601191 ISSN 0892 7022 S2CID 119199372 Girifalco L A Weizer V G 1 April 1959 Application of the Morse Potential Function to Cubic Metals Physical Review 114 3 687 690 Bibcode 1959PhRv 114 687G doi 10 1103 physrev 114 687 hdl 10338 dmlcz 103074 ISSN 0031 899X Feuston B P Garofalini S H 1988 Empirical three body potential for vitreous silica The Journal of Chemical Physics 89 9 5818 5824 Bibcode 1988JChPh 89 5818F doi 10 1063 1 455531 ISSN 0021 9606 J F Ziegler J P Biersack and U Littmark The Stopping and Range of Ions in Matter Pergamon New York 1985 Nordlund K Runeberg N Sundholm D 1997 Repulsive interatomic potentials calculated using Hartree Fock and density functional theory methods Nuclear Instruments and Methods in Physics Research Section B Beam Interactions with Materials and Atoms 132 1 45 54 Bibcode 1997NIMPB 132 45N doi 10 1016 s0168 583x 97 00447 3 ISSN 0168 583X Stillinger FH Weber TA April 1985 Computer simulation of local order in condensed phases of silicon Physical Review B 31 8 5262 5271 Bibcode 1985PhRvB 31 5262S doi 10 1103 physrevb 31 5262 PMID 9936488 Ichimura M 16 February 1996 Stillinger Weber potentials for III V compound semiconductors and their application to the critical thickness calculation for InAs GaAs Physica Status Solidi A 153 2 431 437 Bibcode 1996PSSAR 153 431I doi 10 1002 pssa 2211530217 ISSN 0031 8965 Ohta H Hamaguchi S 2001 Classical interatomic potentials for si o f and si o cl systems PDF Journal of Chemical Physics 115 14 6679 90 Bibcode 2001JChPh 115 6679O doi 10 1063 1 1400789 hdl 2433 50272 Bazant M Z Kaxiras E Justo J F 1997 Environment dependent interatomic potential for bulk silicon Phys Rev B 56 14 8542 arXiv cond mat 9704137 Bibcode 1997PhRvB 56 8542B doi 10 1103 PhysRevB 56 8542 S2CID 17860100 a b Justo Joao F Bazant Martin Z Kaxiras Efthimios Bulatov V V Yip Sidney 1 July 1998 Interatomic potential for silicon defects and disordered phases Physical Review B 58 5 2539 2550 arXiv cond mat 9712058 Bibcode 1998PhRvB 58 2539J doi 10 1103 physrevb 58 2539 ISSN 0163 1829 S2CID 14585375 Foiles SM Baskes MI Daw MS June 1986 Embedded atom method functions for the fcc metals Cu Ag Au Ni Pd Pt and their alloys Physical Review B 33 12 7983 7991 Bibcode 1986PhRvB 33 7983F doi 10 1103 physrevb 33 7983 PMID 9938188 Foiles S M Baskes M I Daw M S 15 June 1988 Erratum Embedded atom method functions for the fcc metals Cu Ag Au Ni Pd Pt and their alloys Physical Review B 37 17 10378 doi 10 1103 physrevb 37 10378 ISSN 0163 1829 Puska M J Nieminen R M Manninen M 15 September 1981 Atoms embedded in an electron gas Immersion energies Physical Review B 24 6 3037 3047 Bibcode 1981PhRvB 24 3037P doi 10 1103 physrevb 24 3037 ISSN 0163 1829 Finnis M W Sinclair J E 1984 A simple empirical N body potential for transition metals Philosophical Magazine A 50 1 45 55 Bibcode 1984PMagA 50 45F doi 10 1080 01418618408244210 ISSN 0141 8610 Erratum Philosophical Magazine A 53 1 161 1986 Bibcode 1986PMagA 53 161 doi 10 1080 01418618608242815 ISSN 0141 8610 Cleri F Rosato V July 1993 Tight binding potentials for transition metals and alloys Physical Review B 48 1 22 33 Bibcode 1993PhRvB 48 22C doi 10 1103 physrevb 48 22 PMID 10006745 Kelchner Cynthia L Halstead David M Perkins Leslie S Wallace Nora M DePristo Andrew E 1994 Construction and evaluation of embedding functions Surface Science 310 1 3 425 435 Bibcode 1994SurSc 310 425K doi 10 1016 0039 6028 94 91405 2 ISSN 0039 6028 Dudarev S L Derlet P M 17 October 2005 A magnetic interatomic potential for molecular dynamics simulations Journal of Physics Condensed Matter 17 44 7097 7118 Bibcode 2005JPCM 17 7097D doi 10 1088 0953 8984 17 44 003 ISSN 0953 8984 S2CID 123141962 Olsson Par Wallenius Janne Domain Christophe Nordlund Kai Malerba Lorenzo 21 December 2005 Two band modeling of a prime phase formation in Fe Cr Physical Review B 72 21 214119 Bibcode 2005PhRvB 72u4119O doi 10 1103 physrevb 72 214119 ISSN 1098 0121 S2CID 16118006 Tersoff J April 1988 New empirical approach for the structure and energy of covalent systems Physical Review B 37 12 6991 7000 Bibcode 1988PhRvB 37 6991T doi 10 1103 PhysRevB 37 6991 PMID 9943969 Brenner DW November 1990 Empirical potential for hydrocarbons for use in simulating the chemical vapor deposition of diamond films Physical Review B 42 15 9458 9471 Bibcode 1990PhRvB 42 9458B doi 10 1103 PhysRevB 42 9458 PMID 9995183 Brenner DW August 1989 Relationship between the embedded atom method and Tersoff potentials Physical Review Letters 63 9 1022 Bibcode 1989PhRvL 63 1022B doi 10 1103 PhysRevLett 63 1022 PMID 10041250 a b c Albe Karsten Nordlund Kai Averback Robert S 2002 Modeling the metal semiconductor interaction Analytical bond order potential for platinum carbon Physical Review B 65 19 195124 Bibcode 2002PhRvB 65s5124A doi 10 1103 PhysRevB 65 195124 ISSN 0163 1829 de Brito Mota F Justo J F Fazzio A 1998 Structural properties of amorphous silicon nitride Phys Rev B 58 13 8323 Bibcode 1998PhRvB 58 8323D doi 10 1103 PhysRevB 58 8323 a b Juslin N Erhart P Traskelin P Nord J Henriksson K O E Nordlund K Salonen E Albe K 15 December 2005 Analytical interatomic potential for modeling nonequilibrium processes in the W C H system Journal of Applied Physics 98 12 123520 123520 12 Bibcode 2005JAP 98l3520J doi 10 1063 1 2149492 ISSN 0021 8979 S2CID 8090449 a b Erhart Paul Juslin Niklas Goy Oliver Nordlund Kai Muller Ralf Albe Karsten 30 June 2006 Analytic bond order potential for atomistic simulations of zinc oxide Journal of Physics Condensed Matter 18 29 6585 6605 Bibcode 2006JPCM 18 6585E doi 10 1088 0953 8984 18 29 003 ISSN 0953 8984 S2CID 38072718 Baskes MI December 1987 Application of the embedded atom method to covalent materials A semiempirical potential for silicon Physical Review Letters 59 23 2666 2669 Bibcode 1987PhRvL 59 2666B doi 10 1103 PhysRevLett 59 2666 PMID 10035617 Baskes MI August 1992 Modified embedded atom potentials for cubic materials and impurities Physical Review B 46 5 2727 2742 Bibcode 1992PhRvB 46 2727B doi 10 1103 PhysRevB 46 2727 PMID 10003959 Lee Byeong Joo Baskes M I 2000 10 01 Second nearest neighbor modified embedded atom method potential Physical Review B 62 13 8564 8567 Bibcode 2000PhRvB 62 8564L doi 10 1103 PhysRevB 62 8564 a b c d Heinz H Lin TJ Mishra RK Emami FS February 2013 Thermodynamically consistent force fields for the assembly of inorganic organic and biological nanostructures the INTERFACE force field Langmuir 29 6 1754 65 doi 10 1021 la3038846 PMID 23276161 a b c Heinz H Ramezani Dakhel H January 2016 Simulations of inorganic bioorganic interfaces to discover new materials insights comparisons to experiment challenges and opportunities Chemical Society Reviews 45 2 412 48 doi 10 1039 c5cs00890e PMID 26750724 Mishra Ratan K Mohamed Aslam Kunhi Geissbuhler David Manzano Hegoi Jamil Tariq Shahsavari Rouzbeh Kalinichev Andrey G Galmarini Sandra Tao Lei Heinz Hendrik Pellenq Roland December 2017 A force field database for cementitious materials including validations applications and opportunities Cement and Concrete Research 102 68 89 doi 10 1016 j cemconres 2017 09 003 Wang J Wolf RM Caldwell JW Kollman PA Case DA July 2004 Development and testing of a general amber force field Journal of Computational Chemistry 25 9 1157 74 doi 10 1002 jcc 20035 PMID 15116359 S2CID 18734898 Huang J MacKerell AD September 2013 CHARMM36 all atom additive protein force field validation based on comparison to NMR data Journal of Computational Chemistry 34 25 2135 45 doi 10 1002 jcc 23354 PMC 3800559 PMID 23832629 a b Bartok Albert P Kondor Risi Csanyi Gabor 2013 05 28 On representing chemical environments Physical Review B 87 18 184115 arXiv 1209 3140 Bibcode 2013PhRvB 87r4115B doi 10 1103 PhysRevB 87 184115 ISSN 1098 0121 S2CID 118375156 Deringer Volker L Csanyi Gabor 2017 03 03 Machine learning based interatomic potential for amorphous carbon Physical Review B 95 9 094203 arXiv 1611 03277 Bibcode 2017PhRvB 95i4203D doi 10 1103 PhysRevB 95 094203 ISSN 2469 9950 S2CID 55190594 Behler J Parrinello M April 2007 Generalized neural network representation of high dimensional potential energy surfaces Physical Review Letters 98 14 146401 Bibcode 2007PhRvL 98n6401B doi 10 1103 PhysRevLett 98 146401 PMID 17501293 Bartok AP Payne MC Kondor R Csanyi G April 2010 Gaussian approximation potentials the accuracy of quantum mechanics without the electrons Physical Review Letters 104 13 136403 arXiv 0910 1019 Bibcode 2010PhRvL 104m6403B doi 10 1103 PhysRevLett 104 136403 PMID 20481899 S2CID 15918457 Dragoni Daniele Daff Thomas D Csanyi Gabor Marzari Nicola 2018 01 30 Achieving DFT accuracy with a machine learning interatomic potential Thermomechanics and defects in bcc ferromagnetic iron Physical Review Materials 2 1 013808 arXiv 1706 10229 Bibcode 2018PhRvM 2a3808D doi 10 1103 PhysRevMaterials 2 013808 hdl 10281 231112 S2CID 119252567 Thompson A P Swiler L P Trott C R Foiles S M Tucker G J 2015 03 15 Spectral neighbor analysis method for automated generation of quantum accurate interatomic potentials Journal of Computational Physics 285 316 330 arXiv 1409 3880 Bibcode 2015JCoPh 285 316T doi 10 1016 j jcp 2014 12 018 Byggmastar J Hamedani A Nordlund K Djurabekova F 2019 10 17 Machine learning interatomic potential for radiation damage and defects in tungsten Physical Review B 100 14 144105 arXiv 1908 07330 Bibcode 2019PhRvB 100n4105B doi 10 1103 PhysRevB 100 144105 hdl 10138 306660 S2CID 201106123 Pun GP Batra R Ramprasad R Mishin Y May 2019 Physically informed artificial neural networks for atomistic modeling of materials Nature Communications 10 1 2339 Bibcode 2019NatCo 10 2339P doi 10 1038 s41467 019 10343 5 PMC 6538760 PMID 31138813 Heinz Hendrik Vaia R A Farmer B L Naik R R 2008 10 09 Accurate Simulation of Surfaces and Interfaces of Face Centered Cubic Metals Using 12 6 and 9 6 Lennard Jones Potentials The Journal of Physical Chemistry C 112 44 17281 17290 doi 10 1021 jp801931d ISSN 1932 7447 Liu Juan Tennessen Emrys Miao Jianwei Huang Yu Rondinelli James M Heinz Hendrik 2018 05 31 Understanding Chemical Bonding in Alloys and the Representation in Atomistic Simulations The Journal of Physical Chemistry C 122 26 14996 15009 doi 10 1021 acs jpcc 8b01891 ISSN 1932 7447 S2CID 51855788 a b Nathanson M Kanhaiya K Pryor A Miao J Heinz H December 2018 Atomic Scale Structure and Stress Release Mechanism in Core Shell Nanoparticles ACS Nano 12 12 12296 12304 doi 10 1021 acsnano 8b06118 PMID 30457827 S2CID 53764446 Ruiz Victor G Liu Wei Tkatchenko Alexandre 2016 01 15 Density functional theory with screened van der Waals interactions applied to atomic and molecular adsorbates on close packed and non close packed surfaces Physical Review B 93 3 035118 Bibcode 2016PhRvB 93c5118R doi 10 1103 physrevb 93 035118 hdl 11858 00 001M 0000 0029 3035 8 ISSN 2469 9950 Ruiz VG Liu W Zojer E Scheffler M Tkatchenko A April 2012 Density functional theory with screened van der Waals interactions for the modeling of hybrid inorganic organic systems Physical Review Letters 108 14 146103 Bibcode 2012PhRvL 108n6103R doi 10 1103 physrevlett 108 146103 hdl 11858 00 001M 0000 000F C6EA 3 PMID 22540809 Ercolessi F Adams J B 10 June 1994 Interatomic Potentials from First Principles Calculations The Force Matching Method Europhysics Letters EPL 26 8 583 588 arXiv cond mat 9306054 Bibcode 1994EL 26 583E doi 10 1209 0295 5075 26 8 005 ISSN 0295 5075 S2CID 18043298 Mishin Y Mehl M J Papaconstantopoulos D A 12 June 2002 Embedded atom potential forB2 NiAl Physical Review B 65 22 224114 Bibcode 2002PhRvB 65v4114M doi 10 1103 physrevb 65 224114 ISSN 0163 1829 Beardmore Keith Smith Roger 1996 Empirical potentials for C Si H systems with application to C60 interactions with Si crystal surfaces Philosophical Magazine A 74 6 1439 1466 Bibcode 1996PMagA 74 1439B doi 10 1080 01418619608240734 ISSN 0141 8610 Mishra Ratan K Flatt Robert J Heinz Hendrik 2013 04 19 Force Field for Tricalcium Silicate and Insight into Nanoscale Properties Cleavage Initial Hydration and Adsorption of Organic Molecules The Journal of Physical Chemistry C 117 20 10417 10432 doi 10 1021 jp312815g ISSN 1932 7447 Ramezani Dakhel Hadi Ruan Lingyan Huang Yu Heinz Hendrik 2015 01 21 Molecular Mechanism of Specific Recognition of Cubic Pt Nanocrystals by Peptides and of the Concentration Dependent Formation from Seed Crystals Advanced Functional Materials 25 9 1374 1384 doi 10 1002 adfm 201404136 ISSN 1616 301X S2CID 94001655 Chen J Zhu E Liu J Zhang S Lin Z Duan X et al December 2018 Building two dimensional materials one row at a time Avoiding the nucleation barrier Science 362 6419 1135 1139 Bibcode 2018Sci 362 1135C doi 10 1126 science aau4146 PMID 30523105 S2CID 54456982 Swamy Varghese Gale Julian D 1 August 2000 Transferable variable charge interatomic potential for atomistic simulation of titanium oxides Physical Review B 62 9 5406 5412 Bibcode 2000PhRvB 62 5406S doi 10 1103 physrevb 62 5406 ISSN 0163 1829 Aguado Andres Bernasconi Leonardo Madden Paul A 2002 A transferable interatomic potential for MgO from ab initio molecular dynamics Chemical Physics Letters 356 5 6 437 444 Bibcode 2002CPL 356 437A doi 10 1016 s0009 2614 02 00326 3 ISSN 0009 2614 Technology U S Department of Commerce National Institute of Standards and Interatomic Potentials Repository Project www ctcms nist gov a href Template Cite web html title Template Cite web cite web a CS1 maint multiple names authors list link Open Knowledgebase of Interatomic Models OpenKIM Behler Jorg Csanyi Gabor 2021 07 19 Machine learning potentials for extended systems a perspective The European Physical Journal B 94 7 142 Bibcode 2021EPJB 94 142B doi 10 1140 epjb s10051 021 00156 1 ISSN 1434 6036 Rosenbrock Conrad W Gubaev Konstantin Shapeev Alexander V Partay Livia B Bernstein Noam Csanyi Gabor Hart Gus L W 2021 01 29 Machine learned interatomic potentials for alloys and alloy phase diagrams npj Computational Materials 7 1 24 arXiv 1906 07816 Bibcode 2021npjCM 7 24R doi 10 1038 s41524 020 00477 2 ISSN 2057 3960 a b c Kocer Emir Ko Tsz Wai Behler Jorg 2022 Neural Network Potentials A Concise Overview of Methods Annual Review of Physical Chemistry 73 163 86 arXiv 2107 03727 Bibcode 2022ARPC 73 163K doi 10 1146 annurev physchem 082720 034254 PMID 34982580 S2CID 235765258 Blank TB Brown SD Calhoun AW Doren DJ 1995 Neural network models of potential energy surfaces The Journal of Chemical Physics 103 10 4129 37 Bibcode 1995JChPh 103 4129B doi 10 1063 1 469597 Rosenbrock Conrad W Gubaev Konstantin Shapeev Alexander V Partay Livia B Bernstein Noam Csanyi Gabor Hart Gus L W 2021 01 29 Machine learned interatomic potentials for alloys and alloy phase diagrams npj Computational Materials 7 1 24 arXiv 1906 07816 Bibcode 2021npjCM 7 24R doi 10 1038 s41524 020 00477 2 ISSN 2057 3960 Behler J Parrinello M 2007 Generalized neural network representation of high dimensional potential energy surfaces Physical Review Letters 148 14 146401 Bibcode 2007PhRvL 98n6401B doi 10 1103 PhysRevLett 98 146401 PMID 17501293 Schutt KT Arbabzadah F Chmiela S Muller KR Tkatchenko A 2017 Quantum chemical insights from deep tensor neural networks Nature Communications 8 13890 arXiv 1609 08259 Bibcode 2017NatCo 813890S doi 10 1038 ncomms13890 PMC 5228054 PMID 28067221 Takamoto So Shinagawa Chikashi Motoki Daisuke Nakago Kosuke May 30 2022 Towards universal neural network potential for material discovery applicable to arbitrary combinations of 45 elements Nature Communications 13 1 2991 arXiv 2106 14583 Bibcode 2022NatCo 13 2991T doi 10 1038 s41467 022 30687 9 PMC 9151783 PMID 35637178 Matlantis Anonymous 2010 04 05 Modeling sans electrons Physics 3 13 s48 arXiv 0910 1019 Bibcode 2010PhRvL 104m6403B doi 10 1103 PhysRevLett 104 136403 PMID 20481899 Bartok Albert P Payne Mike C Kondor Risi Csanyi Gabor 2010 04 01 Gaussian Approximation Potentials The Accuracy of Quantum Mechanics without the Electrons Physical Review Letters 104 13 136403 arXiv 0910 1019 Bibcode 2010PhRvL 104m6403B doi 10 1103 PhysRevLett 104 136403 PMID 20481899 Bartok Albert P De Sandip Poelking Carl Bernstein Noam Kermode James R Csanyi Gabor Ceriotti Michele December 2017 Machine learning unifies the modeling of materials and molecules Science Advances 3 12 e1701816 arXiv 1706 00179 Bibcode 2017SciA 3E1816B doi 10 1126 sciadv 1701816 ISSN 2375 2548 PMC 5729016 PMID 29242828 Bartok Albert P Kondor Risi Csanyi Gabor 2013 05 28 On representing chemical environments Physical Review B 87 18 184115 arXiv 1209 3140 Bibcode 2013PhRvB 87r4115B doi 10 1103 PhysRevB 87 184115 Rasmussen Carl Edward Williams Christopher K I 2008 Gaussian processes for machine learning Adaptive computation and machine learning 3 print ed Cambridge Mass MIT Press ISBN 978 0 262 18253 9 Deringer Volker L Csanyi Gabor 2017 03 03 Machine learning based interatomic potential for amorphous carbon Physical Review B 95 9 094203 arXiv 1611 03277 Bibcode 2017PhRvB 95i4203D doi 10 1103 PhysRevB 95 094203 Bartok Albert P Kermode James Bernstein Noam Csanyi Gabor 2018 12 14 Machine Learning a General Purpose Interatomic Potential for Silicon Physical Review X 8 4 041048 arXiv 1805 01568 Bibcode 2018PhRvX 8d1048B doi 10 1103 PhysRevX 8 041048 Szlachta Wojciech J Bartok Albert P Csanyi Gabor 2014 09 24 Accuracy and transferability of Gaussian approximation potential models for tungsten Physical Review B 90 10 104108 Bibcode 2014PhRvB 90j4108S doi 10 1103 PhysRevB 90 104108 Mocanu Felix C Konstantinou Konstantinos Lee Tae Hoon Bernstein Noam Deringer Volker L Csanyi Gabor Elliott Stephen R 2018 09 27 Modeling the Phase Change Memory Material Ge 2 Sb 2 Te 5 with a Machine Learned Interatomic Potential The Journal of Physical Chemistry B 122 38 8998 9006 doi 10 1021 acs jpcb 8b06476 ISSN 1520 6106 PMID 30173522 Shenoy Lakshmi Woodgate Christopher D Staunton Julie B Bartok Albert P Becquart Charlotte S Domain Christophe Kermode James R 2024 03 22 Collinear spin machine learned interatomic potential for mathrm Fe 7 mathrm Cr 2 mathrm Ni alloy Physical Review Materials 8 3 033804 arXiv 2309 08689 doi 10 1103 PhysRevMaterials 8 033804 Acevedo O Jorgensen WL January 2010 Advances in quantum and molecular mechanical QM MM simulations for organic and enzymatic reactions Accounts of Chemical Research 43 1 142 51 doi 10 1021 ar900171c PMC 2880334 PMID 19728702 External links editNIST interatomic potential repository NIST JARVIS FF Open Knowledgebase of Interatomic Models OpenKIM Retrieved from https en wikipedia org w index php title Interatomic potential amp oldid 1222367977, wikipedia, wiki, book, books, library,

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