YASS (Yet Another Similarity Searcher)[1][2] is a free software,[3] pairwise sequence alignment software for nucleotide sequences, that is, it can search for similarities between DNA or RNA sequences. YASS accepts nucleotide sequences in either plain text or the FASTA format and the output format includes the BLAST tabular output. YASS uses several transition-constrainedspaced seedk-mers, which allow considerably improved sensitivity. YASS can be used locally on a user's machine, or as SaaS on the YASS web server, which produces a browser based dot-plot.
^Noe L., Kucherov. G. (2005). "YASS: enhancing the sensitivity of DNA similarity search". Nucleic Acids Research. 33 (2): W540–W543. doi:10.1093/nar/gki478. PMC1160238. PMID 15980530.
^Noe L., Kucherov. G. (2004). "Improved hit criteria for DNA local alignment". BMC Bioinformatics. 5: 149. doi:10.1186/1471-2105-5-149. PMC526756. PMID 15485572.
yass, software, other, uses, yass, yass, another, similarity, searcher, free, software, pairwise, sequence, alignment, software, nucleotide, sequences, that, search, similarities, between, sequences, yass, accepts, nucleotide, sequences, either, plain, text, f. For other uses see Yass YASS Yet Another Similarity Searcher 1 2 is a free software 3 pairwise sequence alignment software for nucleotide sequences that is it can search for similarities between DNA or RNA sequences YASS accepts nucleotide sequences in either plain text or the FASTA format and the output format includes the BLAST tabular output YASS uses several transition constrained spaced seed k mers which allow considerably improved sensitivity YASS can be used locally on a user s machine or as SaaS on the YASS web server which produces a browser based dot plot YASSStable release1 14Repositorygithub wbr com wbr laurentnoe wbr yassOperating systemLinux Mac MS WindowsTypeBioinformatics toolLicenceGPLv2 CeCILLWebsitehttps bioinfo cristal univ lille fr yass See also editSequence alignment software PatternHunter BLAST FASTA JAlignerReferences edit Noe L Kucherov G 2005 YASS enhancing the sensitivity of DNA similarity search Nucleic Acids Research 33 2 W540 W543 doi 10 1093 nar gki478 PMC 1160238 PMID 15980530 Noe L Kucherov G 2004 Improved hit criteria for DNA local alignment BMC Bioinformatics 5 149 doi 10 1186 1471 2105 5 149 PMC 526756 PMID 15485572 README Retrieved 7 April 2015 External links editOfficial website nbsp nbsp This bioinformatics related article is a stub You can help Wikipedia by expanding it vte Retrieved from https en wikipedia org w index php title Yass software amp oldid 1189439859, wikipedia, wiki, book, books, library,
