jaligner, open, source, java, implementation, smith, waterman, algorithm, with, gotoh, improvement, biological, local, pairwise, sequence, alignment, using, affine, penalty, model, written, ahmed, moustafa, also, editsequence, alignment, software, clustalrefer. JAligner is an open source Java implementation of the Smith Waterman algorithm 1 with Gotoh s improvement 2 for biological local pairwise sequence alignment using the affine gap penalty model It was written by Ahmed Moustafa See also editSequence alignment software ClustalReferences edit Smith TF and Waterman MS 1981 Identification of common molecular subsequences J Mol Biol 147 195 197 Gotoh O 1982 An improved algorithm for matching biological sequences J Mol Biol 162 705 708 External links editOfficial website nbsp nbsp This bioinformatics related article is a stub You can help Wikipedia by expanding it vte Retrieved from https en wikipedia org w index php title JAligner amp oldid 1093043842, wikipedia, wiki, book, books, library,
