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Unified neutral theory of biodiversity

The unified neutral theory of biodiversity and biogeography (here "Unified Theory" or "UNTB") is a theory and the title of a monograph by ecologist Stephen P. Hubbell.[1] It aims to explain the diversity and relative abundance of species in ecological communities. Like other neutral theories of ecology, Hubbell assumes that the differences between members of an ecological community of trophically similar species are "neutral", or irrelevant to their success. This implies that niche differences do not influence abundance and the abundance of each species follows a random walk.[2] The theory has sparked controversy,[3][4][5] and some authors consider it a more complex version of other null models that fit the data better.[6]

The Unified Neutral Theory of Biodiversity and Biogeography
AuthorStephen P. Hubbell
CountryUnited States
LanguageEnglish
SeriesMonographs in Population Biology
Release number
32
PublisherPrinceton University Press
Publication date
2001
Pages375
ISBN0-691-02129-5

"Neutrality" means that at a given trophic level in a food web, species are equivalent in birth rates, death rates, dispersal rates and speciation rates, when measured on a per-capita basis.[7] This can be considered a null hypothesis to niche theory. Hubbell built on earlier neutral models, including Robert MacArthur and E.O. Wilson's theory of island biogeography[1] and Stephen Jay Gould's concepts of symmetry and null models.[7]

An "ecological community" is a group of trophically similar, sympatric species that actually or potentially compete in a local area for the same or similar resources.[1] Under the Unified Theory, complex ecological interactions are permitted among individuals of an ecological community (such as competition and cooperation), provided that all individuals obey the same rules. Asymmetric phenomena such as parasitism and predation are ruled out by the terms of reference; but cooperative strategies such as swarming, and negative interaction such as competing for limited food or light are allowed (so long as all individuals behave alike).

The theory predicts the existence of a fundamental biodiversity constant, conventionally written θ, that appears to govern species richness on a wide variety of spatial and temporal scales.

Saturation

Although not strictly necessary for a neutral theory, many stochastic models of biodiversity assume a fixed, finite community size (total number of individual organisms). There are unavoidable physical constraints on the total number of individuals that can be packed into a given space (although space per se isn't necessarily a resource, it is often a useful surrogate variable for a limiting resource that is distributed over the landscape; examples would include sunlight or hosts, in the case of parasites).

If a wide range of species are considered (say, giant sequoia trees and duckweed, two species that have very different saturation densities), then the assumption of constant community size might not be very good, because density would be higher if the smaller species were monodominant. Because the Unified Theory refers only to communities of trophically similar, competing species, it is unlikely that population density will vary too widely from one place to another.

Hubbell considers the fact that community sizes are constant and interprets it as a general principle: large landscapes are always biotically saturated with individuals. Hubbell thus treats communities as being of a fixed number of individuals, usually denoted by J.

Exceptions to the saturation principle include disturbed ecosystems such as the Serengeti, where saplings are trampled by elephants and Blue wildebeests; or gardens, where certain species are systematically removed.

Species abundances

When abundance data on natural populations are collected, two observations are almost universal:

  • The most common species accounts for a substantial fraction of the individuals sampled;
  • A substantial fraction of the species sampled are very rare. Indeed, a substantial fraction of the species sampled are singletons, that is, species which are sufficiently rare for only a single individual to have been sampled.

Such observations typically generate a large number of questions. Why are the rare species rare? Why is the most abundant species so much more abundant than the median species abundance?

A non neutral explanation for the rarity of rare species might suggest that rarity is a result of poor adaptation to local conditions. The UNTB suggests that it is not necessary to invoke adaptation or niche differences because neutral dynamics alone can generate such patterns.

Species composition in any community will change randomly with time. Any particular abundance structure will have an associated probability. The UNTB predicts that the probability of a community of J individuals composed of S distinct species with abundances   for species 1,   for species 2, and so on up to   for species S is given by

 

where   is the fundamental biodiversity number (  is the speciation rate), and   is the number of species that have i individuals in the sample.

This equation shows that the UNTB implies a nontrivial dominance-diversity equilibrium between speciation and extinction.

As an example, consider a community with 10 individuals and three species "a", "b", and "c" with abundances 3, 6 and 1 respectively. Then the formula above would allow us to assess the likelihood of different values of θ. There are thus S = 3 species and  , all other  's being zero. The formula would give

 

which could be maximized to yield an estimate for θ (in practice, numerical methods are used). The maximum likelihood estimate for θ is about 1.1478.

We could have labelled the species another way and counted the abundances being 1,3,6 instead (or 3,1,6, etc. etc.). Logic tells us that the probability of observing a pattern of abundances will be the same observing any permutation of those abundances. Here we would have

 

and so on.

To account for this, it is helpful to consider only ranked abundances (that is, to sort the abundances before inserting into the formula). A ranked dominance-diversity configuration is usually written as   where   is the abundance of the ith most abundant species:   is the abundance of the most abundant,   the abundance of the second most abundant species, and so on. For convenience, the expression is usually "padded" with enough zeros to ensure that there are J species (the zeros indicating that the extra species have zero abundance).

It is now possible to determine the expected abundance of the ith most abundant species:

 

where C is the total number of configurations,   is the abundance of the ith ranked species in the kth configuration, and   is the dominance-diversity probability. This formula is difficult to manipulate mathematically, but relatively simple to simulate computationally.

The model discussed so far is a model of a regional community, which Hubbell calls the metacommunity. Hubbell also acknowledged that on a local scale, dispersal plays an important role. For example, seeds are more likely to come from nearby parents than from distant parents. Hubbell introduced the parameter m, which denotes the probability of immigration in the local community from the metacommunity. If m = 1, dispersal is unlimited; the local community is just a random sample from the metacommunity and the formulas above apply. If m < 1, dispersal is limited and the local community is a dispersal-limited sample from the metacommunity for which different formulas apply.

It has been shown[8] that  , the expected number of species with abundance n, may be calculated by

 

where θ is the fundamental biodiversity number, J the community size,   is the gamma function, and  . This formula is an approximation. The correct formula is derived in a series of papers, reviewed and synthesized by Etienne and Alonso in 2005:[9]

 

where   is a parameter that measures dispersal limitation.

  is zero for n > J, as there cannot be more species than individuals.

This formula is important because it allows a quick evaluation of the Unified Theory. It is not suitable for testing the theory. For this purpose, the appropriate likelihood function should be used. For the metacommunity this was given above. For the local community with dispersal limitation it is given by:

 

Here, the   for   are coefficients fully determined by the data, being defined as

 

This seemingly complicated formula involves Stirling numbers and Pochhammer symbols, but can be very easily calculated.[9]

An example of a species abundance curve can be found in Scientific American.[10]

Stochastic modelling of species abundances

UNTB distinguishes between a dispersal-limited local community of size   and a so-called metacommunity from which species can (re)immigrate and which acts as a heat bath to the local community. The distribution of species in the metacommunity is given by a dynamic equilibrium of speciation and extinction. Both community dynamics are modelled by appropriate urn processes, where each individual is represented by a ball with a color corresponding to its species. With a certain rate   randomly chosen individuals reproduce, i.e. add another ball of their own color to the urn. Since one basic assumption is saturation, this reproduction has to happen at the cost of another random individual from the urn which is removed. At a different rate   single individuals in the metacommunity are replaced by mutants of an entirely new species. Hubbell calls this simplified model for speciation a point mutation, using the terminology of the Neutral theory of molecular evolution. The urn scheme for the metacommunity of   individuals is the following.

At each time step take one of the two possible actions :

  1. With probability   draw an individual at random and replace another random individual from the urn with a copy of the first one.
  2. With probability   draw an individual and replace it with an individual of a new species.

The size   of the metacommunity does not change. This is a point process in time. The length of the time steps is distributed exponentially. For simplicity one can assume that each time step is as long as the mean time between two changes which can be derived from the reproduction and mutation rates   and  . The probability   is given as  .

The species abundance distribution for this urn process is given by Ewens's sampling formula which was originally derived in 1972 for the distribution of alleles under neutral mutations. The expected number   of species in the metacommunity having exactly   individuals is:[11]

 

where   is called the fundamental biodiversity number. For large metacommunities and   one recovers the Fisher Log-Series as species distribution.

 

The urn scheme for the local community of fixed size   is very similar to the one for the metacommunity.

At each time step take one of the two actions :

  1. With probability   draw an individual at random and replace another random individual from the urn with a copy of the first one.
  2. With probability   replace a random individual with an immigrant drawn from the metacommunity.

The metacommunity is changing on a much larger timescale and is assumed to be fixed during the evolution of the local community. The resulting distribution of species in the local community and expected values depend on four parameters,  ,  ,   and   (or  ) and are derived by Etienne and Alonso (2005),[9] including several simplifying limit cases like the one presented in the previous section (there called  ). The parameter   is a dispersal parameter. If   then the local community is just a sample from the metacommunity. For   the local community is completely isolated from the metacommunity and all species will go extinct except one. This case has been analyzed by Hubbell himself.[1] The case   is characterized by a unimodal species distribution in a Preston Diagram and often fitted by a log-normal distribution. This is understood as an intermediate state between domination of the most common species and a sampling from the metacommunity, where singleton species are most abundant. UNTB thus predicts that in dispersal limited communities rare species become even rarer. The log-normal distribution describes the maximum and the abundance of common species very well but underestimates the number of very rare species considerably which becomes only apparent for very large sample sizes.[1]

Species-area relationships

The Unified Theory unifies biodiversity, as measured by species-abundance curves, with biogeography, as measured by species-area curves. Species-area relationships show the rate at which species diversity increases with area. The topic is of great interest to conservation biologists in the design of reserves, as it is often desired to harbour as many species as possible.

The most commonly encountered relationship is the power law given by

 

where S is the number of species found, A is the area sampled, and c and z are constants. This relationship, with different constants, has been found to fit a wide range of empirical data.

From the perspective of Unified Theory, it is convenient to consider S as a function of total community size J. Then   for some constant k, and if this relationship were exactly true, the species area line would be straight on log scales. It is typically found that the curve is not straight, but the slope changes from being steep at small areas, shallower at intermediate areas, and steep at the largest areas.

The formula for species composition may be used to calculate the expected number of species present in a community under the assumptions of the Unified Theory. In symbols

 

where θ is the fundamental biodiversity number. This formula specifies the expected number of species sampled in a community of size J. The last term,  , is the expected number of new species encountered when adding one new individual to the community. This is an increasing function of θ and a decreasing function of J, as expected.

By making the substitution   (see section on saturation above), then the expected number of species becomes  .

The formula above may be approximated to an integral giving

 

This formulation is predicated on a random placement of individuals.

Example

Consider the following (synthetic) dataset of 27 individuals:

a,a,a,a,a,a,a,a,a,a,b,b,b,b,c,c,c,c,d,d,d,d,e,f,g,h,i

There are thus 27 individuals of 9 species ("a" to "i") in the sample. Tabulating this would give:

 a b c d e f g h i 10 4 4 4 1 1 1 1 1 

indicating that species "a" is the most abundant with 10 individuals and species "e" to "i" are singletons. Tabulating the table gives:

species abundance 1 2 3 4 5 6 7 8 9 10 number of species 5 0 0 3 0 0 0 0 0 1 

On the second row, the 5 in the first column means that five species, species "e" through "i", have abundance one. The following two zeros in columns 2 and 3 mean that zero species have abundance 2 or 3. The 3 in column 4 means that three species, species "b", "c", and "d", have abundance four. The final 1 in column 10 means that one species, species "a", has abundance 10.

This type of dataset is typical in biodiversity studies. Observe how more than half the biodiversity (as measured by species count) is due to singletons.

For real datasets, the species abundances are binned into logarithmic categories, usually using base 2, which gives bins of abundance 0–1, abundance 1–2, abundance 2–4, abundance 4–8, etc. Such abundance classes are called octaves; early developers of this concept included F. W. Preston and histograms showing number of species as a function of abundance octave are known as Preston diagrams.

These bins are not mutually exclusive: a species with abundance 4, for example, could be considered as lying in the 2-4 abundance class or the 4-8 abundance class. Species with an abundance of an exact power of 2 (i.e. 2,4,8,16, etc.) are conventionally considered as having 50% membership in the lower abundance class 50% membership in the upper class. Such species are thus considered to be evenly split between the two adjacent classes (apart from singletons which are classified into the rarest category). Thus in the example above, the Preston abundances would be

abundance class 1 1-2 2-4 4-8 8-16 species 5 0 1.5 1.5 1 

The three species of abundance four thus appear, 1.5 in abundance class 2–4, and 1.5 in 4–8.

The above method of analysis cannot account for species that are unsampled: that is, species sufficiently rare to have been recorded zero times. Preston diagrams are thus truncated at zero abundance. Preston called this the veil line and noted that the cutoff point would move as more individuals are sampled.

Dynamics

All biodiversity patterns previously described are related to time-independent quantities. For biodiversity evolution and species preservation, it is crucial to compare the dynamics of ecosystems with models (Leigh, 2007). An easily accessible index of the underlying evolution is the so-called species turnover distribution (STD), defined as the probability P(r,t) that the population of any species has varied by a fraction r after a given time t.

A neutral model that can analytically predict both the relative species abundance (RSA) at steady-state and the STD at time t has been presented in Azaele et al. (2006).[12] Within this framework the population of any species is represented by a continuous (random) variable x, whose evolution is governed by the following Langevin equation:

 

where b is the immigration rate from a large regional community,   represents competition for finite resources and D is related to demographic stochasticity;   is a Gaussian white noise. The model can also be derived as a continuous approximation of a master equation, where birth and death rates are independent of species, and predicts that at steady-state the RSA is simply a gamma distribution.

From the exact time-dependent solution of the previous equation, one can exactly calculate the STD at time t under stationary conditions:

 

This formula provides good fits of data collected in the Barro Colorado tropical forest from 1990 to 2000. From the best fit one can estimate   ~ 3500 years with a broad uncertainty due to the relative short time interval of the sample. This parameter can be interpreted as the relaxation time of the system, i.e. the time the system needs to recover from a perturbation of species distribution. In the same framework, the estimated mean species lifetime is very close to the fitted temporal scale  . This suggests that the neutral assumption could correspond to a scenario in which species originate and become extinct on the same timescales of fluctuations of the whole ecosystem.

Testing

The theory has provoked much controversy as it "abandons" the role of ecology when modelling ecosystems.[13] The theory has been criticized as it requires an equilibrium, yet climatic and geographical conditions are thought to change too frequently for this to be attained.[13] Tests on bird and tree abundance data demonstrate that the theory is usually a poorer match to the data than alternative null hypotheses that use fewer parameters (a log-normal model with two tunable parameters, compared to the neutral theory's three[6]), and are thus more parsimonious.[2] The theory also fails to describe coral reef communities, studied by Dornelas et al.,[14] and is a poor fit to data in intertidal communities.[15] It also fails to explain why families of tropical trees have statistically highly correlated numbers of species in phylogenetically unrelated and geographically distant forest plots in Central and South America, Africa, and South East Asia.[16]

While the theory has been heralded as a valuable tool for palaeontologists,[7] little work has so far been done to test the theory against the fossil record.[17]

See also

References

  1. ^ a b c d e Hubbell, S.P. (2001). The Unified Neutral Theory of Biodiversity and Biogeography. Princeton University Press. ISBN 9780691021287.
  2. ^ a b McGill, B. J. (2003). "A test of the unified neutral theory of biodiversity". Nature. 422 (6934): 881–885. Bibcode:2003Natur.422..881M. doi:10.1038/nature01583. PMID 12692564. S2CID 1627734.
  3. ^ Pocheville, Arnaud (2015). "The Ecological Niche: History and Recent Controversies". In Heams, Thomas; Huneman, Philippe; Lecointre, Guillaume; et al. (eds.). Handbook of Evolutionary Thinking in the Sciences. Dordrecht: Springer. pp. 547–586. ISBN 978-94-017-9014-7.
  4. ^ Science Daily (2014). New biodiversity study throws out controversial scientific theory. May 27
  5. ^ Connolly, S. R.; MacNeil, M. A.; Caley, M. J.; Knowlton, N.; Cripps, E.; Hisano, M.; Thibaut, L. M.; Bhattacharya, B. D.; Benedetti-Cecchi, L.; Brainard, R. E.; Brandt, A.; Bulleri, F.; Ellingsen, K. E.; Kaiser, S.; Kroncke, I.; Linse, K.; Maggi, E.; O'Hara, T. D.; Plaisance, L.; Poore, G. C. B.; Sarkar, S. K.; Satpathy, K. K.; Schuckel, U.; Williams, A.; Wilson, R. S. (2014). "Commonness and rarity in the marine biosphere" (PDF). Proceedings of the National Academy of Sciences. 111 (23): 8524–8529. Bibcode:2014PNAS..111.8524C. doi:10.1073/pnas.1406664111. ISSN 0027-8424. PMC 4060690. PMID 24912168.
  6. ^ a b Nee, S.; Stone, G. (2003). "The end of the beginning for neutral theory". Trends in Ecology & Evolution. 18 (9): 433–434. doi:10.1016/S0169-5347(03)00196-4.
  7. ^ a b c Hubbell, S. P. (2005). "The neutral theory of biodiversity and biogeography and Stephen Jay Gould". Paleobiology. 31: 122–123. doi:10.1666/0094-8373(2005)031[0122:TNTOBA]2.0.CO;2. S2CID 86271294.
  8. ^ Volkov, Igor; Banavar, Jayanth R.; Hubbell, Stephen P.; Maritan, Amos (August 28, 2003). "Neutral theory and relative species abundance in ecology" (PDF). Nature. 424 (6952): 1035–1037. arXiv:q-bio/0504018. Bibcode:2003Natur.424.1035V. doi:10.1038/nature01883. ISSN 0028-0836. PMID 12944964. S2CID 695540.
  9. ^ a b c Etienne, R.S.; Alonso, D. (2005). "A dispersal-limited sampling theory for species and alleles". Ecology Letters. 8 (11): 1147–1156. doi:10.1111/j.1461-0248.2005.00817.x. hdl:2027.42/74624. PMID 21352438. ("Errata". Ecology Letters. 9 (4): 500. 2006. doi:10.1111/j.1461-0248.2006.00917.x.
  10. ^ Relative Abundance of 1,175 Plant Species within a Borneo Plot
  11. ^ Vallade, M.; Houchmandzadeh, B. (2003). "Analytical solution of a neutral model of biodiversity". Phys. Rev. E. 68 (61902): 061902. Bibcode:2003PhRvE..68f1902V. doi:10.1103/PhysRevE.68.061902. PMID 14754229.
  12. ^ Azaele, S.; Pigolotti, S.; Banavar, J. R.; Maritan, A. (2006). "Dynamical evolution of ecosystems". Nature. 444 (7121): 926–928. Bibcode:2006Natur.444..926A. doi:10.1038/nature05320. PMID 17167485. S2CID 4420401.
  13. ^ a b Ricklefs, R. E. (2006). "The Unified Neutral Theory of Biodiversity: Do the Numbers Add Up?". Ecology. 87 (6): 1424–1431. doi:10.1890/0012-9658(2006)87[1424:TUNTOB]2.0.CO;2. ISSN 0012-9658. PMID 16869416. S2CID 6362978.
  14. ^ Dornelas, M.; Connolly, S.R.; Hughes, T. P. (2006). "Coral reef diversity refutes the neutral theory of biodiversity". Nature. 440 (7080): 80–82. Bibcode:2006Natur.440...80D. doi:10.1038/nature04534. PMID 16511493. S2CID 4419325.
  15. ^ Wootton, J.T. (2005). "Field parameterization and experimental test of the neutral theory of biodiversity". Nature. 433 (7023): 309–312. Bibcode:2005Natur.433..309W. doi:10.1038/nature03211. PMID 15662423. S2CID 2925482.
  16. ^ Ricklefs, R. E.; S. S. Renner (2012). "Global correlations in tropical tree species richness and abundance reject neutrality". Science. 335 (6067): 464–467. Bibcode:2012Sci...335..464R. doi:10.1126/science.1215182. PMID 22282811. S2CID 15347595.
  17. ^ Bonuso, N. (2007). "Shortening the Gap Between Modern Community Ecology and Evolutionary Paleoecology". PALAIOS. 22 (5): 455–456. Bibcode:2007Palai..22..455B. doi:10.2110/palo.2007.S05. S2CID 121753503.

Further reading

  • Gilbert, B; Lechowicz MJ (2004). "Neutrality, niches, and dispersal in a temperate forest understory". PNAS. 101 (20): 7651–7656. Bibcode:2004PNAS..101.7651G. doi:10.1073/pnas.0400814101. PMC 419661. PMID 15128948.
  • Leigh E.G. (Jr) (2007). "Neutral theory: a historical perspective" (PDF). Journal of Evolutionary Biology. 20 (6): 2075–2091. doi:10.1111/j.1420-9101.2007.01410.x. PMID 17956380.
  • Preston, F. W. (1962). "The Canonical Distribution of Commonness and Rarity: Part I". Ecology. Ecology, Vol. 43, No. 2. 43 (2): 185–215. doi:10.2307/1931976. JSTOR 1931976.
  • Pueyo, S.; He, F.; Zillio, T. (2007). "The maximum entropy formalism and the idiosyncratic theory of biodiversity". Ecology Letters. 10 (11): 1017–1028. doi:10.1111/j.1461-0248.2007.01096.x. PMC 2121135. PMID 17692099.

External links

  • Scientific American Interview with Steve Hubbell
  • R package for implementing UNTB September 18, 2019, at the Wayback Machine

unified, neutral, theory, biodiversity, unified, neutral, theory, biodiversity, biogeography, here, unified, theory, untb, theory, title, monograph, ecologist, stephen, hubbell, aims, explain, diversity, relative, abundance, species, ecological, communities, l. The unified neutral theory of biodiversity and biogeography here Unified Theory or UNTB is a theory and the title of a monograph by ecologist Stephen P Hubbell 1 It aims to explain the diversity and relative abundance of species in ecological communities Like other neutral theories of ecology Hubbell assumes that the differences between members of an ecological community of trophically similar species are neutral or irrelevant to their success This implies that niche differences do not influence abundance and the abundance of each species follows a random walk 2 The theory has sparked controversy 3 4 5 and some authors consider it a more complex version of other null models that fit the data better 6 The Unified Neutral Theory of Biodiversity and BiogeographyAuthorStephen P HubbellCountryUnited StatesLanguageEnglishSeriesMonographs in Population BiologyRelease number32PublisherPrinceton University PressPublication date2001Pages375ISBN0 691 02129 5 Neutrality means that at a given trophic level in a food web species are equivalent in birth rates death rates dispersal rates and speciation rates when measured on a per capita basis 7 This can be considered a null hypothesis to niche theory Hubbell built on earlier neutral models including Robert MacArthur and E O Wilson s theory of island biogeography 1 and Stephen Jay Gould s concepts of symmetry and null models 7 An ecological community is a group of trophically similar sympatric species that actually or potentially compete in a local area for the same or similar resources 1 Under the Unified Theory complex ecological interactions are permitted among individuals of an ecological community such as competition and cooperation provided that all individuals obey the same rules Asymmetric phenomena such as parasitism and predation are ruled out by the terms of reference but cooperative strategies such as swarming and negative interaction such as competing for limited food or light are allowed so long as all individuals behave alike The theory predicts the existence of a fundamental biodiversity constant conventionally written 8 that appears to govern species richness on a wide variety of spatial and temporal scales Contents 1 Saturation 1 1 Species abundances 2 Stochastic modelling of species abundances 3 Species area relationships 3 1 Example 4 Dynamics 5 Testing 6 See also 7 References 8 Further reading 9 External linksSaturation EditAlthough not strictly necessary for a neutral theory many stochastic models of biodiversity assume a fixed finite community size total number of individual organisms There are unavoidable physical constraints on the total number of individuals that can be packed into a given space although space per se isn t necessarily a resource it is often a useful surrogate variable for a limiting resource that is distributed over the landscape examples would include sunlight or hosts in the case of parasites If a wide range of species are considered say giant sequoia trees and duckweed two species that have very different saturation densities then the assumption of constant community size might not be very good because density would be higher if the smaller species were monodominant Because the Unified Theory refers only to communities of trophically similar competing species it is unlikely that population density will vary too widely from one place to another Hubbell considers the fact that community sizes are constant and interprets it as a general principle large landscapes are always biotically saturated with individuals Hubbell thus treats communities as being of a fixed number of individuals usually denoted by J Exceptions to the saturation principle include disturbed ecosystems such as the Serengeti where saplings are trampled by elephants and Blue wildebeests or gardens where certain species are systematically removed Species abundances Edit When abundance data on natural populations are collected two observations are almost universal The most common species accounts for a substantial fraction of the individuals sampled A substantial fraction of the species sampled are very rare Indeed a substantial fraction of the species sampled are singletons that is species which are sufficiently rare for only a single individual to have been sampled Such observations typically generate a large number of questions Why are the rare species rare Why is the most abundant species so much more abundant than the median species abundance A non neutral explanation for the rarity of rare species might suggest that rarity is a result of poor adaptation to local conditions The UNTB suggests that it is not necessary to invoke adaptation or niche differences because neutral dynamics alone can generate such patterns Species composition in any community will change randomly with time Any particular abundance structure will have an associated probability The UNTB predicts that the probability of a community of J individuals composed of S distinct species with abundances n 1 displaystyle n 1 for species 1 n 2 displaystyle n 2 for species 2 and so on up to n S displaystyle n S for species S is given by Pr n 1 n 2 n S 8 J J 8 S 1 ϕ 1 2 ϕ 2 J ϕ J ϕ 1 ϕ 2 ϕ J P k 1 J 8 k 1 displaystyle Pr n 1 n 2 ldots n S theta J frac J theta S 1 phi 1 2 phi 2 cdots J phi J phi 1 phi 2 cdots phi J Pi k 1 J theta k 1 where 8 2 J n displaystyle theta 2J nu is the fundamental biodiversity number n displaystyle nu is the speciation rate and ϕ i displaystyle phi i is the number of species that have i individuals in the sample This equation shows that the UNTB implies a nontrivial dominance diversity equilibrium between speciation and extinction As an example consider a community with 10 individuals and three species a b and c with abundances 3 6 and 1 respectively Then the formula above would allow us to assess the likelihood of different values of 8 There are thus S 3 species and ϕ 1 ϕ 3 ϕ 6 1 displaystyle phi 1 phi 3 phi 6 1 all other ϕ displaystyle phi s being zero The formula would give Pr 3 6 1 8 10 10 8 3 1 1 3 1 6 1 1 1 1 8 8 1 8 2 8 9 displaystyle Pr 3 6 1 theta 10 frac 10 theta 3 1 1 cdot 3 1 cdot 6 1 cdot 1 1 1 cdot theta theta 1 theta 2 cdots theta 9 which could be maximized to yield an estimate for 8 in practice numerical methods are used The maximum likelihood estimate for 8 is about 1 1478 We could have labelled the species another way and counted the abundances being 1 3 6 instead or 3 1 6 etc etc Logic tells us that the probability of observing a pattern of abundances will be the same observing any permutation of those abundances Here we would have Pr 3 3 6 1 Pr 3 1 3 6 Pr 3 3 1 6 displaystyle Pr 3 3 6 1 Pr 3 1 3 6 Pr 3 3 1 6 and so on To account for this it is helpful to consider only ranked abundances that is to sort the abundances before inserting into the formula A ranked dominance diversity configuration is usually written as Pr S r 1 r 2 r s 0 0 displaystyle Pr S r 1 r 2 ldots r s 0 ldots 0 where r i displaystyle r i is the abundance of the ith most abundant species r 1 displaystyle r 1 is the abundance of the most abundant r 2 displaystyle r 2 the abundance of the second most abundant species and so on For convenience the expression is usually padded with enough zeros to ensure that there are J species the zeros indicating that the extra species have zero abundance It is now possible to determine the expected abundance of the ith most abundant species E r i k 1 C r i k Pr S r 1 r 2 r s 0 0 displaystyle E r i sum k 1 C r i k cdot Pr S r 1 r 2 ldots r s 0 ldots 0 where C is the total number of configurations r i k displaystyle r i k is the abundance of the ith ranked species in the kth configuration and P r displaystyle Pr ldots is the dominance diversity probability This formula is difficult to manipulate mathematically but relatively simple to simulate computationally The model discussed so far is a model of a regional community which Hubbell calls the metacommunity Hubbell also acknowledged that on a local scale dispersal plays an important role For example seeds are more likely to come from nearby parents than from distant parents Hubbell introduced the parameter m which denotes the probability of immigration in the local community from the metacommunity If m 1 dispersal is unlimited the local community is just a random sample from the metacommunity and the formulas above apply If m lt 1 dispersal is limited and the local community is a dispersal limited sample from the metacommunity for which different formulas apply It has been shown 8 that ϕ n displaystyle langle phi n rangle the expected number of species with abundance n may be calculated by 8 J n J n G g G J g y 0 g G n y G 1 y G J n g y G g y exp y 8 g d y displaystyle theta frac J n J n frac Gamma gamma Gamma J gamma int y 0 gamma frac Gamma n y Gamma 1 y frac Gamma J n gamma y Gamma gamma y exp y theta gamma dy where 8 is the fundamental biodiversity number J the community size G displaystyle Gamma is the gamma function and g J 1 m 1 m displaystyle gamma J 1 m 1 m This formula is an approximation The correct formula is derived in a series of papers reviewed and synthesized by Etienne and Alonso in 2005 9 8 I J J n 0 1 I x n I 1 x J n 1 x 8 1 x d x displaystyle frac theta I J J choose n int 0 1 Ix n I 1 x J n frac 1 x theta 1 x dx where I J 1 m 1 m displaystyle I J 1 m 1 m is a parameter that measures dispersal limitation ϕ n displaystyle langle phi n rangle is zero for n gt J as there cannot be more species than individuals This formula is important because it allows a quick evaluation of the Unified Theory It is not suitable for testing the theory For this purpose the appropriate likelihood function should be used For the metacommunity this was given above For the local community with dispersal limitation it is given by Pr n 1 n 2 n S 8 m J J i 1 S n i j 1 J F j 8 S I J A S J K D A I A 8 A displaystyle Pr n 1 n 2 ldots n S theta m J frac J prod i 1 S n i prod j 1 J Phi j frac theta S I J sum A S J K overrightarrow D A frac I A theta A Here the K D A displaystyle K overrightarrow D A for A S J displaystyle A S J are coefficients fully determined by the data being defined as K D A a 1 a S i 1 S a i A i 1 S s n i a i s a i 1 s n i 1 displaystyle K overrightarrow D A sum a 1 a S sum i 1 S a i A prod i 1 S frac overline s left n i a i right overline s left a i 1 right overline s left n i 1 right This seemingly complicated formula involves Stirling numbers and Pochhammer symbols but can be very easily calculated 9 An example of a species abundance curve can be found in Scientific American 10 Stochastic modelling of species abundances EditUNTB distinguishes between a dispersal limited local community of size J displaystyle J and a so called metacommunity from which species can re immigrate and which acts as a heat bath to the local community The distribution of species in the metacommunity is given by a dynamic equilibrium of speciation and extinction Both community dynamics are modelled by appropriate urn processes where each individual is represented by a ball with a color corresponding to its species With a certain rate r displaystyle r randomly chosen individuals reproduce i e add another ball of their own color to the urn Since one basic assumption is saturation this reproduction has to happen at the cost of another random individual from the urn which is removed At a different rate m displaystyle mu single individuals in the metacommunity are replaced by mutants of an entirely new species Hubbell calls this simplified model for speciation a point mutation using the terminology of the Neutral theory of molecular evolution The urn scheme for the metacommunity of J M displaystyle J M individuals is the following At each time step take one of the two possible actions With probability 1 n displaystyle 1 nu draw an individual at random and replace another random individual from the urn with a copy of the first one With probability n displaystyle nu draw an individual and replace it with an individual of a new species The size J M displaystyle J M of the metacommunity does not change This is a point process in time The length of the time steps is distributed exponentially For simplicity one can assume that each time step is as long as the mean time between two changes which can be derived from the reproduction and mutation rates r displaystyle r and m displaystyle mu The probability n displaystyle nu is given as n m r m displaystyle nu mu r mu The species abundance distribution for this urn process is given by Ewens s sampling formula which was originally derived in 1972 for the distribution of alleles under neutral mutations The expected number S M n displaystyle S M n of species in the metacommunity having exactly n displaystyle n individuals is 11 S M n 8 n G J M 1 G J M 8 n G J M 1 n G J M 8 displaystyle S M n frac theta n frac Gamma J M 1 Gamma J M theta n Gamma J M 1 n Gamma J M theta where 8 J M 1 n 1 n J M n displaystyle theta J M 1 nu 1 nu approx J M nu is called the fundamental biodiversity number For large metacommunities and n J M displaystyle n ll J M one recovers the Fisher Log Series as species distribution S M n 8 n J M J M 8 n displaystyle S M n approx frac theta n left frac J M J M theta right n The urn scheme for the local community of fixed size J displaystyle J is very similar to the one for the metacommunity At each time step take one of the two actions With probability 1 m displaystyle 1 m draw an individual at random and replace another random individual from the urn with a copy of the first one With probability m displaystyle m replace a random individual with an immigrant drawn from the metacommunity The metacommunity is changing on a much larger timescale and is assumed to be fixed during the evolution of the local community The resulting distribution of species in the local community and expected values depend on four parameters J displaystyle J J M displaystyle J M 8 displaystyle theta and m displaystyle m or I displaystyle I and are derived by Etienne and Alonso 2005 9 including several simplifying limit cases like the one presented in the previous section there called ϕ n displaystyle langle phi n rangle The parameter m displaystyle m is a dispersal parameter If m 1 displaystyle m 1 then the local community is just a sample from the metacommunity For m 0 displaystyle m 0 the local community is completely isolated from the metacommunity and all species will go extinct except one This case has been analyzed by Hubbell himself 1 The case 0 lt m lt 1 displaystyle 0 lt m lt 1 is characterized by a unimodal species distribution in a Preston Diagram and often fitted by a log normal distribution This is understood as an intermediate state between domination of the most common species and a sampling from the metacommunity where singleton species are most abundant UNTB thus predicts that in dispersal limited communities rare species become even rarer The log normal distribution describes the maximum and the abundance of common species very well but underestimates the number of very rare species considerably which becomes only apparent for very large sample sizes 1 Species area relationships EditThe Unified Theory unifies biodiversity as measured by species abundance curves with biogeography as measured by species area curves Species area relationships show the rate at which species diversity increases with area The topic is of great interest to conservation biologists in the design of reserves as it is often desired to harbour as many species as possible The most commonly encountered relationship is the power law given by S c A z displaystyle S cA z where S is the number of species found A is the area sampled and c and z are constants This relationship with different constants has been found to fit a wide range of empirical data From the perspective of Unified Theory it is convenient to consider S as a function of total community size J Then S k J z displaystyle S kJ z for some constant k and if this relationship were exactly true the species area line would be straight on log scales It is typically found that the curve is not straight but the slope changes from being steep at small areas shallower at intermediate areas and steep at the largest areas The formula for species composition may be used to calculate the expected number of species present in a community under the assumptions of the Unified Theory In symbols E S 8 J 8 8 8 8 1 8 8 2 8 8 J 1 displaystyle E left S theta J right frac theta theta frac theta theta 1 frac theta theta 2 cdots frac theta theta J 1 where 8 is the fundamental biodiversity number This formula specifies the expected number of species sampled in a community of size J The last term 8 8 J 1 displaystyle theta theta J 1 is the expected number of new species encountered when adding one new individual to the community This is an increasing function of 8 and a decreasing function of J as expected By making the substitution J r A displaystyle J rho A see section on saturation above then the expected number of species becomes S 8 8 r A 1 displaystyle Sigma theta theta rho A 1 The formula above may be approximated to an integral giving S 8 1 8 ln 1 J 1 8 displaystyle S theta 1 theta ln left 1 frac J 1 theta right This formulation is predicated on a random placement of individuals Example Edit Consider the following synthetic dataset of 27 individuals a a a a a a a a a a b b b b c c c c d d d d e f g h iThere are thus 27 individuals of 9 species a to i in the sample Tabulating this would give a b c d e f g h i 10 4 4 4 1 1 1 1 1 indicating that species a is the most abundant with 10 individuals and species e to i are singletons Tabulating the table gives species abundance 1 2 3 4 5 6 7 8 9 10 number of species 5 0 0 3 0 0 0 0 0 1 On the second row the 5 in the first column means that five species species e through i have abundance one The following two zeros in columns 2 and 3 mean that zero species have abundance 2 or 3 The 3 in column 4 means that three species species b c and d have abundance four The final 1 in column 10 means that one species species a has abundance 10 This type of dataset is typical in biodiversity studies Observe how more than half the biodiversity as measured by species count is due to singletons For real datasets the species abundances are binned into logarithmic categories usually using base 2 which gives bins of abundance 0 1 abundance 1 2 abundance 2 4 abundance 4 8 etc Such abundance classes are called octaves early developers of this concept included F W Preston and histograms showing number of species as a function of abundance octave are known as Preston diagrams These bins are not mutually exclusive a species with abundance 4 for example could be considered as lying in the 2 4 abundance class or the 4 8 abundance class Species with an abundance of an exact power of 2 i e 2 4 8 16 etc are conventionally considered as having 50 membership in the lower abundance class 50 membership in the upper class Such species are thus considered to be evenly split between the two adjacent classes apart from singletons which are classified into the rarest category Thus in the example above the Preston abundances would be abundance class 1 1 2 2 4 4 8 8 16 species 5 0 1 5 1 5 1 The three species of abundance four thus appear 1 5 in abundance class 2 4 and 1 5 in 4 8 The above method of analysis cannot account for species that are unsampled that is species sufficiently rare to have been recorded zero times Preston diagrams are thus truncated at zero abundance Preston called this the veil line and noted that the cutoff point would move as more individuals are sampled Dynamics EditAll biodiversity patterns previously described are related to time independent quantities For biodiversity evolution and species preservation it is crucial to compare the dynamics of ecosystems with models Leigh 2007 An easily accessible index of the underlying evolution is the so called species turnover distribution STD defined as the probability P r t that the population of any species has varied by a fraction r after a given time t A neutral model that can analytically predict both the relative species abundance RSA at steady state and the STD at time t has been presented in Azaele et al 2006 12 Within this framework the population of any species is represented by a continuous random variable x whose evolution is governed by the following Langevin equation x b x t D x 3 t displaystyle dot x b x tau sqrt Dx xi t where b is the immigration rate from a large regional community x t displaystyle x tau represents competition for finite resources and D is related to demographic stochasticity 3 t displaystyle xi t is a Gaussian white noise The model can also be derived as a continuous approximation of a master equation where birth and death rates are independent of species and predicts that at steady state the RSA is simply a gamma distribution From the exact time dependent solution of the previous equation one can exactly calculate the STD at time t under stationary conditions P r t A l 1 l e t t b 2 D 1 e t t sinh t 2 t l b D 1 4 l 2 l 1 2 e t t 4 l b D 1 2 displaystyle P r t A frac lambda 1 lambda frac e t tau b 2D 1 e t tau left frac sinh frac t 2 tau lambda right frac b D 1 left frac 4 lambda 2 lambda 1 2 e t tau 4 lambda right frac b D frac 1 2 This formula provides good fits of data collected in the Barro Colorado tropical forest from 1990 to 2000 From the best fit one can estimate t displaystyle tau 3500 years with a broad uncertainty due to the relative short time interval of the sample This parameter can be interpreted as the relaxation time of the system i e the time the system needs to recover from a perturbation of species distribution In the same framework the estimated mean species lifetime is very close to the fitted temporal scale t displaystyle tau This suggests that the neutral assumption could correspond to a scenario in which species originate and become extinct on the same timescales of fluctuations of the whole ecosystem Testing EditThe theory has provoked much controversy as it abandons the role of ecology when modelling ecosystems 13 The theory has been criticized as it requires an equilibrium yet climatic and geographical conditions are thought to change too frequently for this to be attained 13 Tests on bird and tree abundance data demonstrate that the theory is usually a poorer match to the data than alternative null hypotheses that use fewer parameters a log normal model with two tunable parameters compared to the neutral theory s three 6 and are thus more parsimonious 2 The theory also fails to describe coral reef communities studied by Dornelas et al 14 and is a poor fit to data in intertidal communities 15 It also fails to explain why families of tropical trees have statistically highly correlated numbers of species in phylogenetically unrelated and geographically distant forest plots in Central and South America Africa and South East Asia 16 While the theory has been heralded as a valuable tool for palaeontologists 7 little work has so far been done to test the theory against the fossil record 17 See also EditBiodiversity Action Plan Functional equivalence ecology Ewens s sampling formula Metabolic theory of ecology Neutral theory of molecular evolution Warren EwensReferences Edit a b c d e Hubbell S P 2001 The Unified Neutral Theory of Biodiversity and Biogeography Princeton University Press ISBN 9780691021287 a b McGill B J 2003 A test of the unified neutral theory of biodiversity Nature 422 6934 881 885 Bibcode 2003Natur 422 881M doi 10 1038 nature01583 PMID 12692564 S2CID 1627734 Pocheville Arnaud 2015 The Ecological Niche History and Recent Controversies In Heams Thomas Huneman Philippe Lecointre Guillaume et al eds Handbook of Evolutionary Thinking in the Sciences Dordrecht Springer pp 547 586 ISBN 978 94 017 9014 7 Science Daily 2014 New biodiversity study throws out controversial scientific theory May 27 Connolly S R MacNeil M A Caley M J Knowlton N Cripps E Hisano M Thibaut L M Bhattacharya B D Benedetti Cecchi L Brainard R E Brandt A Bulleri F Ellingsen K E Kaiser S Kroncke I Linse K Maggi E O Hara T D Plaisance L Poore G C B Sarkar S K Satpathy K K Schuckel U Williams A Wilson R S 2014 Commonness and rarity in the marine biosphere PDF Proceedings of the National Academy of Sciences 111 23 8524 8529 Bibcode 2014PNAS 111 8524C doi 10 1073 pnas 1406664111 ISSN 0027 8424 PMC 4060690 PMID 24912168 a b Nee S Stone G 2003 The end of the beginning for neutral theory Trends in Ecology amp Evolution 18 9 433 434 doi 10 1016 S0169 5347 03 00196 4 a b c Hubbell S P 2005 The neutral theory of biodiversity and biogeography and Stephen Jay Gould Paleobiology 31 122 123 doi 10 1666 0094 8373 2005 031 0122 TNTOBA 2 0 CO 2 S2CID 86271294 Volkov Igor Banavar Jayanth R Hubbell Stephen P Maritan Amos August 28 2003 Neutral theory and relative species abundance in ecology PDF Nature 424 6952 1035 1037 arXiv q bio 0504018 Bibcode 2003Natur 424 1035V doi 10 1038 nature01883 ISSN 0028 0836 PMID 12944964 S2CID 695540 a b c Etienne R S Alonso D 2005 A dispersal limited sampling theory for species and alleles Ecology Letters 8 11 1147 1156 doi 10 1111 j 1461 0248 2005 00817 x hdl 2027 42 74624 PMID 21352438 Errata Ecology Letters 9 4 500 2006 doi 10 1111 j 1461 0248 2006 00917 x Relative Abundance of 1 175 Plant Species within a Borneo Plot Vallade M Houchmandzadeh B 2003 Analytical solution of a neutral model of biodiversity Phys Rev E 68 61902 061902 Bibcode 2003PhRvE 68f1902V doi 10 1103 PhysRevE 68 061902 PMID 14754229 Azaele S Pigolotti S Banavar J R Maritan A 2006 Dynamical evolution of ecosystems Nature 444 7121 926 928 Bibcode 2006Natur 444 926A doi 10 1038 nature05320 PMID 17167485 S2CID 4420401 a b Ricklefs R E 2006 The Unified Neutral Theory of Biodiversity Do the Numbers Add Up Ecology 87 6 1424 1431 doi 10 1890 0012 9658 2006 87 1424 TUNTOB 2 0 CO 2 ISSN 0012 9658 PMID 16869416 S2CID 6362978 Dornelas M Connolly S R Hughes T P 2006 Coral reef diversity refutes the neutral theory of biodiversity Nature 440 7080 80 82 Bibcode 2006Natur 440 80D doi 10 1038 nature04534 PMID 16511493 S2CID 4419325 Wootton J T 2005 Field parameterization and experimental test of the neutral theory of biodiversity Nature 433 7023 309 312 Bibcode 2005Natur 433 309W doi 10 1038 nature03211 PMID 15662423 S2CID 2925482 Ricklefs R E S S Renner 2012 Global correlations in tropical tree species richness and abundance reject neutrality Science 335 6067 464 467 Bibcode 2012Sci 335 464R doi 10 1126 science 1215182 PMID 22282811 S2CID 15347595 Bonuso N 2007 Shortening the Gap Between Modern Community Ecology and Evolutionary Paleoecology PALAIOS 22 5 455 456 Bibcode 2007Palai 22 455B doi 10 2110 palo 2007 S05 S2CID 121753503 Further reading EditGilbert B Lechowicz MJ 2004 Neutrality niches and dispersal in a temperate forest understory PNAS 101 20 7651 7656 Bibcode 2004PNAS 101 7651G doi 10 1073 pnas 0400814101 PMC 419661 PMID 15128948 Leigh E G Jr 2007 Neutral theory a historical perspective PDF Journal of Evolutionary Biology 20 6 2075 2091 doi 10 1111 j 1420 9101 2007 01410 x PMID 17956380 Preston F W 1962 The Canonical Distribution of Commonness and Rarity Part I Ecology Ecology Vol 43 No 2 43 2 185 215 doi 10 2307 1931976 JSTOR 1931976 Pueyo S He F Zillio T 2007 The maximum entropy formalism and the idiosyncratic theory of biodiversity Ecology Letters 10 11 1017 1028 doi 10 1111 j 1461 0248 2007 01096 x PMC 2121135 PMID 17692099 External links EditScientific American Interview with Steve Hubbell R package for implementing UNTB Archived September 18 2019 at the Wayback Machine Ecological neutral theory useful model or statement of ignorance in Cell Press Discussions Retrieved from https en wikipedia org w index php title Unified neutral theory of biodiversity amp oldid 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