Wikispecies has information related to Synergistota.
The Synergistota is a phylum of anaerobic bacteria that show Gram-negative staining and have rod/vibrioid cell shape.[2][3] Although Synergistota have a diderm cell envelope,[4][5] the genes for various proteins involved in lipopolysaccharides biosynthesis have not yet been detected in Synergistota, indicating that they may have an atypical outer cell envelope.[4][5] The Synergistota inhabit a majority of anaerobic environments including animal gastrointestinal tracts, soil, oil wells, and wastewater treatment plants and they are also present in sites of human diseases such as cysts, abscesses, and areas of periodontal disease.[6][7] Due to their presence at illness related sites, the Synergistota are suggested to be opportunistic pathogens but they can also be found in healthy individuals in the microbiome of the umbilicus and in normal vaginal flora.[7][8] Species within this phylum have also been implicated in periodontal disease,[9] gastrointestinal infections and soft tissue infections.[7] Other species from this phylum have been identified as significant contributors in the degradation of sludge for production of biogas in anaerobic digesters and are potential candidates for use in renewable energy production through their production of hydrogen gas.[10] All of the known Synergistota species and genera are presently part of a single class (Synergistia), order (Synergistiales), and family (Synergistaceae).[3]
Recent comparative analyses of sequenced Synergistota genomes have led to identification of large numbers of conserved signature indels (CSIs) in protein sequences that are specific for either all sequenced Synergistota species or some of their sub-clades that are observed in phylogenetic trees.[11] Of the CSIs that were identified, 32 in widely distributed proteins such as RpoB, RpoC, UvrD, GyrA, PolA, PolC, MraW, NadD, PyrE, RpsA, RpsH, FtsA, RadA, etc., including a large >300 aa insert in the RpoC protein, are present in various Synergistota species, but except for isolated bacteria, these CSIs are not found in the protein homologues from all other organisms. These CSIs provide novel molecular markers for distinguishing Synergistota species from all other bacteria.[11] Seven other CSIs in important proteins including a 13 aa in RpoB were found to be uniquely present in Jonquetella, Pyramidobacter and Dethiosulfovibrio species indicating a close and specific relationship among these bacteria, which is also strongly supported by phylogenetic trees. Fifteen addition CSIs that were only present in Jonquetella and Pyramidobacter indicate a close association between these two species.[11] Lastly, a close relationship between the Aminomonas and Thermanaerovibrio species is also supported by 9 identified CSIs. The identified molecular markers provide reliable means for the division of species from the phylum Synergistota into intermediate taxonomic ranks such as families and orders.[11]
^Oren A, Garrity GM (2021). "Valid publication of the names of forty-two phyla of prokaryotes". Int J Syst Evol Microbiol. 71 (10): 5056. doi:10.1099/ijsem.0.005056. PMID 34694987.
^ abJumas-Bilak, E.; Roudiere, L.; Marchandin, H. (2009). "Description of 'Synergistetes' phyl. nov. and emended description of the phylum 'Deferribacteres' and of the family Syntrophomonadaceae, phylum 'Firmicutes'". Int. J. Syst. Evol. Microbiol. 59: 1028–1035. doi:10.1099/ijs.0.006718-0.
^ abGupta, R. S. (2011) Origin of Diderm (Gram-negative) Bacteria: Antibiotic Selection Pressure Rather than Endosymbiosis Likely led to the Evolution of Bacterial Cells with Two Membranes. Antonie van Leeuwenhoek. 100: 171–182
^ abSutcliffe, I.C. (2010). "A phylum level perspective on bacterial cell envelope architecture". Trends Microbiol. 18: 464–470. doi:10.1016/j.tim.2010.06.005. PMID 20637628.
^Jumas-Bilak, E.; Carlier, J.P.; Jean-Pierre, H.; Citron, D.; Bernard, K.; Damay, A.; Gay, B.; Teyssier, C.; Campos, J.; Marchandin, H. (2007). "Jonquetella anthropi gen. nov., sp. nov., the first member of the candidate phylum 'Synergistetes' isolated from man". Int. J. Syst. Evol. Microbiol. 57: 2743–2748. doi:10.1099/ijs.0.65213-0. PMID 18048718.
^ abcVartoukian, S.R., Palmer, R.M., and Wade, W.G. (2007). The division "Synergistes". Anaerobe. 13, 99–106.
^Marchandin, H., Damay, A., Roudiere, L., Teyssier, C., Zorgniotti, I., Dechaud, H., Jean-Pierre, H., and Jumas-Bilak, E. (2010). Phylogeny, diversity and host specialization in the phylum Synergistetes with emphasis on strains and clones of human origin. Res. Microbiol. 161, 91–100.
^Horz, H.P.; D.M. Citron; Y.A. Warren; E.J. Goldstein; G. Conrads (August 2006). "Synergistes Group Organisms of Human Origin". Journal of Clinical Microbiology. 44 (8): 2914–2920. doi:10.1128/JCM.00568-06. PMC1594628. PMID 16891512.
^Riviere, D., Desvignes, V., Pelletier, E., Chaussonnerie, S., Guermazi, S., Weissenbach, J., Li, T., Camacho, P., and Sghir, A. (2009). Towards the definition of a core of microorganisms involved in anaerobic digestion of sludge. ISME. J. 3, 700–714.
^ abcdBhandari, V.; Gupta, R. S. (2012). "Molecular signatures for the phylum Synergistetes and some of its subclades". Antonie van Leeuwenhoek. 102: 517–40. doi:10.1007/s10482-012-9759-2. PMID 22711299.
synergistota, wikispecies, information, related, phylum, anaerobic, bacteria, that, show, gram, negative, staining, have, vibrioid, cell, shape, although, have, diderm, cell, envelope, genes, various, proteins, involved, lipopolysaccharides, biosynthesis, have. Wikispecies has information related to Synergistota The Synergistota is a phylum of anaerobic bacteria that show Gram negative staining and have rod vibrioid cell shape 2 3 Although Synergistota have a diderm cell envelope 4 5 the genes for various proteins involved in lipopolysaccharides biosynthesis have not yet been detected in Synergistota indicating that they may have an atypical outer cell envelope 4 5 The Synergistota inhabit a majority of anaerobic environments including animal gastrointestinal tracts soil oil wells and wastewater treatment plants and they are also present in sites of human diseases such as cysts abscesses and areas of periodontal disease 6 7 Due to their presence at illness related sites the Synergistota are suggested to be opportunistic pathogens but they can also be found in healthy individuals in the microbiome of the umbilicus and in normal vaginal flora 7 8 Species within this phylum have also been implicated in periodontal disease 9 gastrointestinal infections and soft tissue infections 7 Other species from this phylum have been identified as significant contributors in the degradation of sludge for production of biogas in anaerobic digesters and are potential candidates for use in renewable energy production through their production of hydrogen gas 10 All of the known Synergistota species and genera are presently part of a single class Synergistia order Synergistiales and family Synergistaceae 3 SynergistotaScientific classificationDomain BacteriaJumas Bilak et al 2021 1 Phylum SynergistotaJumas Bilak et al 2009Class SynergistiaJumas Bilak et al 2009Order SynergistalesJumas Bilak et al 2009FamiliesAcetomicrobiaceae Aminiphilaceae Aminithiophilaceae Aminobacteriaceae Dethiosulfovibrionaceae Synergistaceae Thermosynergistaceae ThermovirgaceaeSynonyms Synergistaeota Oren et al 2015 Synergistetes Jumas Bilak et al 2009 Synergistota Whitman et al 2018 Contents 1 Comparative genomics and molecular signatures 2 Phylogeny 3 Taxonomy 4 See also 5 ReferencesComparative genomics and molecular signatures editRecent comparative analyses of sequenced Synergistota genomes have led to identification of large numbers of conserved signature indels CSIs in protein sequences that are specific for either all sequenced Synergistota species or some of their sub clades that are observed in phylogenetic trees 11 Of the CSIs that were identified 32 in widely distributed proteins such as RpoB RpoC UvrD GyrA PolA PolC MraW NadD PyrE RpsA RpsH FtsA RadA etc including a large gt 300 aa insert in the RpoC protein are present in various Synergistota species but except for isolated bacteria these CSIs are not found in the protein homologues from all other organisms These CSIs provide novel molecular markers for distinguishing Synergistota species from all other bacteria 11 Seven other CSIs in important proteins including a 13 aa in RpoB were found to be uniquely present in Jonquetella Pyramidobacter and Dethiosulfovibrio species indicating a close and specific relationship among these bacteria which is also strongly supported by phylogenetic trees Fifteen addition CSIs that were only present in Jonquetella and Pyramidobacter indicate a close association between these two species 11 Lastly a close relationship between the Aminomonas and Thermanaerovibrio species is also supported by 9 identified CSIs The identified molecular markers provide reliable means for the division of species from the phylum Synergistota into intermediate taxonomic ranks such as families and orders 11 Phylogeny editSee also Bacterial taxonomy 16S rRNA based LTP 08 2023 12 13 14 120 single copy marker proteins based GTDB 08 RS214 15 16 17 Synergistota Thermosynergistes pyruvativorans Yang et al 2021Acetomicrobium A flavidum Soutschek et al 1985A mobile Menes amp Muxi 2002 Ben Hania et al 2016A hydrogeniformans Maune amp Tanner 2012 Ben Hania et al 2016A thermoterrenum Rees et al 1997 Ben Hania et al 2016Thermovirga lienii Dahle and Birkeland 2006Aminithiophilus ramosus Pradel et al 2023Aminiphilus circumscriptus Diaz et al 2007Aminomonas paucivorans Baena et al 1999Thermanaerovibrio T acidaminovorans Guangsheng et al 1997 Baena et al 1999T velox Zavarzina et al 2000Synergistes jonesii Allison et al 1993Cloacibacillus C evryensis Ganesan et al 2008C porcorum Looft et al 2013Lactivibrio alcoholicus Qiu et al 2014Aminivibrio pyruvatiphilus Honda et al 2013Fretibacterium fastidiosum Vartoukian et al 2013Aminobacterium A thunnarium Hamdi et al 2015A colombiense Baena et al 1999 type sp A mobile Baena et al 2000Jonquetella anthropi Jumas Bilak et al 2007Rarimicrobium hominis Jumas Bilak et al 2015Pyramidobacter P piscolens Downes et al 2009P porci Wylensek et al 2021Dethiosulfovibrio D salsuginis Diaz Cardenas et al 2010D faecalis Grabowski et al 2022D peptidovorans Magot et al 1997 type sp D marinus Surkov et al 2001D acidaminovorans Surkov et al 2001D russensis Surkov et al 2001 Synergistota Thermosynergistaceae Thermosynergistes pyruvativoransAcetomicrobiaceae Acetomicrobium A flavidumA hydrogeniformansA thermoterrenumThermovirgaceae Thermovirga lieniiAminiphilaceae Aminiphilus circumscriptusSynergistaceae Aminomonas paucivoransThermanaerovibrio T acidaminovoransT velox Ca Caccocola Ca C faecigallinarum Gilroy et al 2021 Ca C faecipullorum Gilroy et al 2021Synergistes jonesiiCloacibacillus C evryensisC porcorumAminobacteriaceae Aminivibrio pyruvatiphilusFretibacterium fastidiosumAminobacterium A colombienseA mobileDethiosulfovibrionaceae Jonquetella anthropiPyramidobacter P piscolensP porciDethiosulfovibrio D salsuginisD faecalisD peptidovoransD russensisTaxonomy editThe currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature LSPN 18 and the National Center for Biotechnology Information NCBI 19 Phylum Synergistota Jumas Bilak et al 2021 Class Synergistia Jumas Bilak et al 2009 Order Synergistales Jumas Bilak et al 2009 Genus Pacaella Ndongo et al 2017 Species P massiliensis Ndongo et al 2017 Genus Candidatus Tammella Hongoh et al 2007 Species Ca T caduceiae Hongoh et al 2007 Family Aminithiophilaceae Pradel et al 2023 Genus Aminithiophilus Pradel et al 2023 Family Acetomicrobiaceae Pradel et al 2023 Genus Acetomicrobium Soutschek et al 1985 Anaerobaculum Rees et al 1997 Family Aminiphilaceae Pradel et al 2023 Genus Aminirod Liu et al 2021 Species A propionatiphilus Liu et al 2021 Genus Aminiphilus Diaz et al 2007 Family Aminobacteriaceae Pradel et al 2023 Genus Aminobacterium Baena et al 1999 Genus Aminivibrio Honda et al 2013 Genus Fretibacterium Vartoukian et al 2013 Genus Lactivibrio Qiu et al 2014 Family Dethiosulfovibrionaceae Pradel et al 2023 Genus Dethiosulfovibrio Magot et al 1997 Genus Jonquetella Jumas Bilak et al 2007 Genus Pyramidobacter Downes et al 2009 Genus Rarimicrobium Jumas Bilak et al 2015 Family Synergistaceae Jumas Bilak et al 2009 Clostridiales Family XV Thermosynergistaceae Yang et al 2021 Genus Aminomonas Baena et al 1999 Genus Candidatus Caccocola Gilroy et al 2021 Genus Cloacibacillus Ganesan et al 2008 emend Looft et al 2013 Genus Candidatus Equadaptatus Gilroy et al 2022 Species Ca E faecalis Gilroy et al 2022 Genus Synergistes Allison et al 1993 Genus Thermanaerovibrio Baena et al 1999 emend Palaniappan et al 2013 Family Thermosynergistaceae Yang et al 2021 Genus Thermosynergistes Yang et al 2021 Family Thermovirgaceae Pradel et al 2023 Genus Thermovirga Dahle and Birkeland 2006See also editList of bacteria genera List of bacterial ordersReferences edit Oren A Garrity GM 2021 Valid publication of the names of forty two phyla of prokaryotes Int J Syst Evol Microbiol 71 10 5056 doi 10 1099 ijsem 0 005056 PMID 34694987 Hugenholtz P Hooper S D and Kyrpides N C 2009 Focus Synergistetes Environ Microbiol 11 1327 1329 a b Jumas Bilak E Roudiere L Marchandin H 2009 Description of Synergistetes phyl nov and emended description of the phylum Deferribacteres and of the family Syntrophomonadaceae phylum Firmicutes Int J Syst Evol Microbiol 59 1028 1035 doi 10 1099 ijs 0 006718 0 a b Gupta R S 2011 Origin of Diderm Gram negative Bacteria Antibiotic Selection Pressure Rather than Endosymbiosis Likely led to the Evolution of Bacterial Cells with Two Membranes Antonie van Leeuwenhoek 100 171 182 a b Sutcliffe I C 2010 A phylum level perspective on bacterial cell envelope architecture Trends Microbiol 18 464 470 doi 10 1016 j tim 2010 06 005 PMID 20637628 Jumas Bilak E Carlier J P Jean Pierre H Citron D Bernard K Damay A Gay B Teyssier C Campos J Marchandin H 2007 Jonquetella anthropi gen nov sp nov the first member of the candidate phylum Synergistetes isolated from man Int J Syst Evol Microbiol 57 2743 2748 doi 10 1099 ijs 0 65213 0 PMID 18048718 a b c Vartoukian S R Palmer R M and Wade W G 2007 The division Synergistes Anaerobe 13 99 106 Marchandin H Damay A Roudiere L Teyssier C Zorgniotti I Dechaud H Jean Pierre H and Jumas Bilak E 2010 Phylogeny diversity and host specialization in the phylum Synergistetes with emphasis on strains and clones of human origin Res Microbiol 161 91 100 Horz H P D M Citron Y A Warren E J Goldstein G Conrads August 2006 Synergistes Group Organisms of Human Origin Journal of Clinical Microbiology 44 8 2914 2920 doi 10 1128 JCM 00568 06 PMC 1594628 PMID 16891512 Riviere D Desvignes V Pelletier E Chaussonnerie S Guermazi S Weissenbach J Li T Camacho P and Sghir A 2009 Towards the definition of a core of microorganisms involved in anaerobic digestion of sludge ISME J 3 700 714 a b c d Bhandari V Gupta R S 2012 Molecular signatures for the phylum Synergistetes and some of its subclades Antonie van Leeuwenhoek 102 517 40 doi 10 1007 s10482 012 9759 2 PMID 22711299 The LTP Retrieved 20 November 2023 LTP all tree in newick format Retrieved 20 November 2023 LTP 08 2023 Release Notes PDF Retrieved 20 November 2023 GTDB release 08 RS214 Genome Taxonomy Database Retrieved 10 May 2023 bac120 r214 sp label Genome Taxonomy Database Retrieved 10 May 2023 Taxon History Genome Taxonomy Database Retrieved 10 May 2023 J P Euzeby Synergistetes List of Prokaryotic names with Standing in Nomenclature LPSN Retrieved 2016 03 20 Sayers et al Synergistetes National Center for Biotechnology Information NCBI taxonomy database Retrieved 2016 03 20 Portal nbsp Biology Retrieved from https en wikipedia org w index php title Synergistota amp oldid 1190320684, wikipedia, wiki, book, books, library,
