SPATS1

Spermatogenesis associated serine rich 1 (SPATS1) is a protein which in humans is encoded by the SPATS1 gene. It is also known by the aliases Dishevelled-DEP domain interacting protein (DDIP), Spermatogenesis Associated 8 (SPATA8), and serin-rich spermatogenic protein 1 (SRSP1).^[5] A general idea of its chemical structure, subcellular localization, expression, and conservation is known. Research suggests SPATS1 may play a role in the canonical Wnt Signaling pathway and in the first spermatogenic wave.

SPATS1
Identifiers
Aliases	SPATS1, DDIP, SPATA8, SRSP1, spermatogenesis associated serine rich 1
External IDs	MGI: 1918270 HomoloGene: 12376 GeneCards: SPATS1
Gene location (Human) Chr. Chromosome 6 (human)^[1] Band 6p21.1 Start 44,342,650 bp^[1] End 44,380,179 bp^[1]
Gene location (Mouse) Chr. Chromosome 17 (mouse)^[2] Band 17|17 B3 Start 45,751,504 bp^[2] End 45,786,341 bp^[2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in right uterine tube islet of Langerhans right lung prefrontal cortex endometrium bone marrow cells hypothalamus caudate nucleus temporal lobe hippocampus proper Top expressed in spermatocyte seminiferous tubule spermatid morula visual cortex blastocyst submandibular gland superior frontal gyrus digastric muscle temporal muscle More reference expression data BioGPS n/a
Orthologs Species Human Mouse Entrez 221409 71020 Ensembl ENSG00000249481 ENSMUSG00000023935 UniProt Q496A3 A2RRY8 RefSeq (mRNA) NM_145026 NM_001372081 NM_027649 NM_001357831 NM_001357832 RefSeq (protein) NP_659463 NP_001359010 NP_081925 NP_001344760 NP_001344761 Location (UCSC) Chr 6: 44.34 – 44.38 Mb Chr 17: 45.75 – 45.79 Mb PubMed search ^[3] ^[4]
Wikidata
View/Edit Human View/Edit Mouse

Gene

The human SPATS1 gene contains 1150 nucleotides, coding for 300 amino acids. It's located on the positive strand of chromosome 6 in the 21p1 region.^[5] As of now there are no known single nucleotide polymorphisms (SNPs) that prove to be clinically significant.^[6]

Protein

Structure

The protein in its longest form has 8 exons. There is another possible isoform, but experimental confirmation is lacking – possibly due to it being produced at low levels because of an immature stop codon.^[7] Bioinformatic analysis suggests that the protein does not have transmembrane structure and is composed of both alpha helixes and beta sheets. There have been conflicting numbers for SPATS1 isoelectric points. Several sources have said 6.68, while two others suggested that it is higher, 7.04 and 7.47.^[8][9][10]

Subcellular location

Studies have suggested that most of the expression is found in the cytoplasm of the cell, but there is also evidence of expression in the nucleus.^[11] Expression in the nucleus may be supported by the fact that the rat homolog of the SPATS1 gene was experimentally found to have a probable bipartite nuclear localization signal.^[12] In addition, bioinformatic tools have identified a bipartite nuclear localization signal with high probability in the human protein at amino acids 174 - 191.^[13]

Post-translational modifications

Bioinformatic analysis suggests that it undergoes several post-translational modifications. The more plausible ones propose a GPI – modification site at amino acid 280, N-glycosylation sites at amino acids 49 and 229, and a phosphorylation site at amino acid 113. There are 85 predicted sites of phosphorylation, 23 having an 80% or higher likelihood.^[14] Only the one located at amino acid 113 has been experimentally confirmed.^[5] There is also a high probability of a SASRP1 motif that spans amino acids 51 - 288.^[15]

Protein interactions

Possible interacting proteins are listed in the table below. Note that these proteins have not been experimentally confirmed to interact with SPATS1. Instead, their interaction potential was determined by looking

 

The image above is a predicted secondary structure of the SPATS1 protein. This prediction was generated using I-TASSER.

at concurrence patterns and textmining.^[16]

 

The image above is a schematic drawing of the SPATS1 protein. Green represents sites of N-Glycosylation, red represents experimentally confirmed sites of phosphorylation, yellow represents GPI - modification sites, the purple bar represents the Bipartite nuclear localization signal, and pink represents the SASRP1 motif.

Abbreviation	Protein Name	Function	Score
ZNF683	zinc finger protein 683	may be involved in transcriptional regulation	0.633
TMC5	transmembrane channel like 5	probable ion channel	0.624
GTSF1L	gametocyte specific factor 1 like	unknown	0.567
TMEM225	transmembrane protein 225	most likely inhibits phosphate 1 (PP1) in sperm via binding to catalytic sub-unit PPP1CC	0.566
SPATA3	spermatogenesis associated 3	unknown	0.537
FAM71F1	family with sequence similarity 71 member F1	unknown	0.535
C9orf139	chromosome 9 open reading frame 139	unknown	0.477
SPACA4	sperm acrosome associated 4	sperm surface membrane protein that may be involved in sperm - egg plasma membrane adhesion and fusion during fertilization	0.472
SCML4	sex comb on midleg-like protein 4	PcG proteins that act by forming multi-protein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development	0.457

Expression

Regulation

The expression of this protein has been found to greatly decline in adulthood, compared to expression levels measured in fetuses.^[11] Studies have shown some fluctuation during the gestation period, but overall remaining relatively high. There has also been evidence of high expression levels up until day 28 postpartum.^[17]

Location

Expression of this protein has been found in peritubular myoid cells, gonocytes, pachytene spermatocytes, spermatogonia, myoid cells, and Sertoli cells.^[11]

 

The image on the left represents a heat map of the expression levels of the SPATS1 protein in the pituitary gland. The picture on the right shows a scale for the color and shown and the coordinating expression level. These images were generated using Brain Allen.

Mouse brains have shown expression in various areas of the brain including the pituitary gland, the prefrontal cortex, the frontal lobe, the cerebellum, and the parietal lobe.^[18] Highest expression levels have been found in the testes, the next highest levels being found in the trachea. A protein abundance histogram, which compares the abundance of a desired protein to other proteins, shows that SPATS1 is on the lower level of expression.^[5]

Function

The specific function of SPATS1 is still being studied. Research has indicated that it may play a role in initiation of the first spermatogenic wave as well as the first male meiotic division.^[11] Another study suggests that it acts as a negative regulator in the canonical Wnt signaling pathway.^[12] Several microaary studies have studied the effects of knocking out different proteins and enzymes and the resulting effects on SPATS1 expression. Epigentic factors, specifically histone methylation, have also been looked at. The effects of knockout on phenotypes have also been done in several studies.^[5]

Conservation

SPATS1 protein is conserved in species as early as Oxytricha trifallax. No orthologues have been found for this protein in archaea or bacteria. Nor have orthologs been found in birds.^[19] There is a high level of conservation among mammals and other close orthologs in the coding region. There is conservation among distant orthologs in non-coding regions, including the promoter, 5' UTR, and 3' UTR. These conservations are kept through either the same nucleotide, or a chemically similar nucleotide.^[20] Below is a table of orthologs along with the percent similarity and their date of divergence.^[19][21]

Ortholog	Sequence Similarity to Homo sapiens	Sequence Identity to Homo sapiens	Date of Divergence (MYA)
Pongo abelii	95.70%	95.00%	15.2
Heterocephalus glaber	58.30%	52.00%	88
Pteropus alecto	71.30%	66.90%	94
Bos taurus	50.70%	47.70%	94
Bos mutus	64.10%	58.80%	94
Balaenoptera acutorostrata scammoni	80.30%	74.00%	94
Loxodonta africana	67.20%	61.00%	102
Sarcophilus harrisii	48.20%	37.50%	160
Ornithorhynchus anatinus	49.20%	39.90%	169
Gavialis gangeticus	45.40%	36.70%	320
Anolis carolinensis	48.30%	34.10%	320
Pelodiscus sinensis	45.90%	33.40%	320
Nanorana parkeri	43.10%	30.30%	353
Strongylocentrotus purpuratus	33.60%	25.60%	627
Nematostella vectensis	28.30%	25.20%	685
Branchiostoma belcheri	36.50%	29.20%	699
Crassostrea gigas	35.00%	27.00%	758
Lottia gigantea	32.70%	26.20%	758
Oxytricha trifallax	31.80%	20.40%	1781

References

1. GRCh38: Ensembl release 89: ENSG00000249481 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000023935 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. "Homo sapiens spermatogenesis associated serine rich 1 (SPATS1), mRNA - Nucleotide - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2017-02-20.
6. "dbSNP Short Genetic Variations". NCBI. Retrieved April 23, 2017.
7. "UniProtKB - Q496A3 (SPAS1_HUMAN)". UniProt. Retrieved May 2, 2017.
8. . Archived from the original on April 29, 2013. Retrieved April 25, 2017.
9. "Compute pI/Mw tool". April 28, 2017.
10. "Calculate Molecular Weight and Isoelectric Point". April 28, 2017.
11. Capoano CA, Wettstein R, Kun A, Geisinger A (2010). "Spats 1 (Srsp1) is differentially expressed during testis development of the rat". Gene Expression Patterns. 10 (1): 1–8. doi:10.1016/j.gep.2009.11.006. PMID 19948251.
12. Zhang H, Zhang H, Zhang Y, Ng SS, Ren F, Wang Y, Duan Y, Chen L, Zhai Y, Guo Q, Chang Z (November 2010). "Dishevelled-DEP domain interacting protein (DDIP) inhibits Wnt signaling by promoting TCF4 degradation and disrupting the TCF4/beta-catenin complex". Cellular Signalling. 22 (11): 1753–60. doi:10.1016/j.cellsig.2010.06.016. PMID 20603214.
13. "Motif Scan".
14. "Expasy: Proteomics Tools".
15. "ExPASY: Bioinformatics Resource Tool".
16. "STRING Protein - Protein Interaction Tool".
17. "GEO Profiles".
18. "Allen Brain".
19. "NCBI Protein Blast".
20. "Biology Workbench".
21. "TimeTree".