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Hyphomicrobiales

April 12, 2024

The Hyphomicrobiales (synonom Rhizobiales) are an order of Gram-negative Alphaproteobacteria.

Hyphomicrobiales
Agrobacterium (SEM image)
Scientific classification
Domain: Bacteria
Phylum: Pseudomonadota
Class: Alphaproteobacteria
Order: Hyphomicrobiales
Douglas 1957 (Approved Lists 1980)
Families[1]

See text

Synonyms[2]
  • Rhizobiales Kuykendall 2006

The rhizobia, which fix nitrogen and are symbiotic with plant roots, appear in several different families. The four families Nitrobacteraceae, Hyphomicrobiaceae, Phyllobacteriaceae, and Rhizobiaceae contain at least several genera of nitrogen-fixing, legume-nodulating, microsymbiotic bacteria. Examples are the genera Bradyrhizobium and Rhizobium. Species of the Methylocystaceae are methanotrophs; they use methanol (CH3OH) or methane (CH4) as their sole energy and carbon sources. Other important genera are the human pathogens Bartonella and Brucella, as well as Agrobacterium (useful in genetic engineering).

Taxonomy edit

Accepted families edit

Unassigned Genera edit

The following genus has not been assigned to a family:

  • Flaviflagellibacter Dong et al. 2019[3]

Provisional Taxa edit

These taxa have been published, but have not been validated according to the Bacteriological Code:

  • "Nordella" La Scola et al. 2004[4]
  • "Propylenellaceae" Liu et al. 2021[5]
    • "Propylenella" Liu et al. 2021[5]
      • "Propylenella binzhouense" Liu et al. 2021[5]
  • "Thermopetrobacter" Sislak 2013[6]

Phylogeny edit

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature[7] and the phylogeny is based on whole-genome sequences.[2][a]

Natural genetic transformation edit

Natural genetic transformation has been reported in at least four Hyphomicrobiales species: Agrobacterium tumefaciens,[8] Methylobacterium organophilum,[9] Ensifer adhaerens,[10] and Bradyrhizobium japonicum.[11] Natural genetic transformation is a sexual process involving DNA transfer from one bacterial cell to another through the intervening medium, and the integration of the donor sequence into the recipient genome by homologous recombination.

See also edit

Notes edit

  1. ^ Aestuariivirgaceae, Alsobacteraceae, Ancalomicrobiaceae, Lichenibacteriaceae, Lichenihabitantaceae, Rhabdaerophilaceae, and Segnochrobactraceae are not included in this phylogenetic tree.
  2. ^ Phyllobacterium is separate from the rest of Phyllobacteriaceae.
  3. ^ Prosthecomicrobium is separate from the rest of Hyphomicrobiaceae.

References edit

  1. ^ Parker CT, Garrity GM (1 January 2003). Parker CT, Garrity GM (eds.). "Taxonomic Abstract for the families: Mabikibacteraceae". The NamesforLife Abstracts. NamesforLife, LLC. doi:10.1601/tx.30673.
  2. ^ a b Hördt A, López MG, Meier-Kolthoff JP, Schleuning M, Weinhold LM, Tindall BJ, et al. (2020). "Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria". Frontiers in Microbiology. 11: 468. doi:10.3389/fmicb.2020.00468. PMC 7179689. PMID 32373076.
  3. ^ Dong L, Han MX, Wang D, Liu F, Asem MD, Jiao JY, Xiao M, Salam N, Li WJ (2019). "Flaviflagellibacter deserti gen. nov., sp. nov., a novel member of the order Rhizobiales isolated from a desert soil". Antonie van Leeuwenhoek. 112 (6): 947–954. doi:10.1007/s10482-019-01228-0. PMID 30637538. S2CID 58006833.
  4. ^ La Scola B, Barrassi L, Raoult D (2004). "A novel alpha-Proteobacterium, Nordella oligomobilis gen. nov., sp. nov., isolated by using amoebal co-cultures". Res Microbiol. 155 (1): 47–51. doi:10.1016/j.resmic.2003.09.012. PMID 14759708.
  5. ^ a b c Liu YL, Meng D, Wang F, Gong XF, Gu PF, Fan XY, Du ZJ, Zou JD, Li Q (2021). "Propylenella binzhouense gen. nov., sp. nov. isolated from activated sludge, and proposal of Propylenellaceae fam. nov". Antonie van Leeuwenhoek. 114 (3): 225–233. doi:10.1007/s10482-020-01514-2. PMID 33400070. S2CID 230665484.
  6. ^ Sislak CD (2013). Novel Thermophilic Bacteria Isolated From Marine Hydrothermal Vents (MSc). Portland State University. doi:10.15760/etd.1485. 1486.
  7. ^ Euzéby JP, Parte AC. "Hyphomicrobiales". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved May 15, 2021.
  8. ^ Demanèche S, Kay E, Gourbière F, Simonet P (June 2001). "Natural transformation of Pseudomonas fluorescens and Agrobacterium tumefaciens in soil". Applied and Environmental Microbiology. 67 (6): 2617–21. Bibcode:2001ApEnM..67.2617D. doi:10.1128/AEM.67.6.2617-2621.2001. PMC 92915. PMID 11375171.
  9. ^ O'Connor M, Wopat A, Hanson RS (January 1977). "Genetic transformation in Methylobacterium organophilum". Journal of General Microbiology. 98 (1): 265–72. doi:10.1099/00221287-98-1-265. PMID 401866.
  10. ^ Zuniga-Soto E, Mullins E, Dedicova B (2015). "Ensifer-mediated transformation: an efficient non-Agrobacterium protocol for the genetic modification of rice". SpringerPlus. 4: 600. doi:10.1186/s40064-015-1369-9. PMC 4628045. PMID 26543735.
  11. ^ Raina JL, Modi VV (August 1972). "Deoxyribonucleate binding and transformation in Rhizobium jpaonicum". Journal of Bacteriology. 111 (2): 356–60. doi:10.1128/JB.111.2.356-360.1972. PMC 251290. PMID 4538250.

Further reading edit

  • Kuykendall LD, Dazzo FB (2005). "Allorhizobium". In Brenner DJ, Krieg NR, Staley JT, Garrity G (eds.). The Alpha-, Beta-, Delta- and Epsilonproteobacteria, The Proteobacteria, Part C, Bergey's Manual of Systematic Bacteriology. Vol. 2 (2nd ed.). Springer, New York, NY. pp. 345–346. ISBN 978-0-387-24144-9.
  • Kuykendall LD (2005). "Genus Azorhizobium". In Brenner DJ, Krieg NR, Staley JT, Garrity G (eds.). The Alpha-, Beta-, Delta- and Epsilonproteobacteria, The Proteobacteria, Part C, Bergey's Manual of Systematic Bacteriology. Vol. 2 (2nd ed.). Springer, New York, NY. pp. 505–506. ISBN 978-0-387-24144-9.
  • Kuykendall LD (2005). "Genus Bradyrhizobium, family Bradyrhizobiaceae'". In Brenner DJ, Krieg NR, Staley JT, Garrity G (eds.). The Alpha-, Beta-, Delta- and Epsilonproteobacteria, The Proteobacteria, Part C, Bergey's Manual of Systematic Bacteriology. Vol. 2 (2nd ed.). Springer, New York, NY. pp. 438–443. ISBN 978-0-387-24144-9.
  • Kuykendall LD, Young JM, Martínez-Romero, Kerr A, Sawada H (2005). "Genus Rhizobium, a highly divergent genus in a revised family". In Brenner DJ, Krieg NR, Staley JT, Garrity G (eds.). The Alpha-, Beta-, Delta- and Epsilonproteobacteria, The Proteobacteria, Part C, Bergey's Manual of Systematic Bacteriology. Vol. 2 (2nd ed.). Springer, New York, NY. pp. 324–340. ISBN 978-0-387-24144-9.
  • Chen WX, Wang ET, Kuykendall LD (2005). "enus Mesorhizobium, Family Photobacteriaceae.". In Brenner DJ, Krieg NR, Staley JT, Garrity G (eds.). The Alpha-, Beta-, Delta- and Epsilonproteobacteria, The Proteobacteria, Part C, Bergey's Manual of Systematic Bacteriology. Vol. 2 (2nd ed.). Springer, New York, NY. pp. 403–408. ISBN 978-0-387-24144-9.

April 12, 2024
hyphomicrobiales, synonom, rhizobiales, order, gram, negative, alphaproteobacteria, agrobacterium, image, scientific, classificationdomain, bacteriaphylum, pseudomonadotaclass, alphaproteobacteriaorder, douglas, 1957, approved, lists, 1980, families, textsynon. The Hyphomicrobiales synonom Rhizobiales are an order of Gram negative Alphaproteobacteria HyphomicrobialesAgrobacterium SEM image Scientific classificationDomain BacteriaPhylum PseudomonadotaClass AlphaproteobacteriaOrder HyphomicrobialesDouglas 1957 Approved Lists 1980 Families 1 See textSynonyms 2 Rhizobiales Kuykendall 2006The rhizobia which fix nitrogen and are symbiotic with plant roots appear in several different families The four families Nitrobacteraceae Hyphomicrobiaceae Phyllobacteriaceae and Rhizobiaceae contain at least several genera of nitrogen fixing legume nodulating microsymbiotic bacteria Examples are the genera Bradyrhizobium and Rhizobium Species of the Methylocystaceae are methanotrophs they use methanol CH3OH or methane CH4 as their sole energy and carbon sources Other important genera are the human pathogens Bartonella and Brucella as well as Agrobacterium useful in genetic engineering Contents 1 Taxonomy 1 1 Accepted families 1 2 Unassigned Genera 1 3 Provisional Taxa 2 Phylogeny 3 Natural genetic transformation 4 See also 5 Notes 6 References 7 Further readingTaxonomy editAccepted families edit Aestuariivirgaceae Li et al 2019 Afifellaceae Hordt et al 2020 Ahrensiaceae Hordt et al 2020 Alsobacteraceae Sun et al 2018 Amorphaceae Hordt et al 2020 Ancalomicrobiaceae Dahal et al 2018 Aurantimonadaceae Hordt et al 2020 Bartonellaceae Gieszczykiewicz 1939 Approved Lists 1980 Beijerinckiaceae Garrity et al 2006 Blastochloridaceae Hordt et al 2020 Boseaceae Hordt et al 2020 Breoghaniaceae Hordt et al 2020 Brucellaceae Breed et al 1957 Approved Lists 1980 Chelatococcaceae Dedysh et al 2016 Cohaesibacteraceae Hwang and Cho 2008 Devosiaceae Hordt et al 2020 Hyphomicrobiaceae Babudieri 1950 Approved Lists 1980 Kaistiaceae Hordt et al 2020 Lichenibacteriaceae Pankratov et al 2020 Lichenihabitantaceae Noh et al 2019 Methylobacteriaceae Garrity et al 2006 Methylocystaceae Bowman 2006 Nitrobacteraceae corrig Buchanan 1917 Approved Lists 1980 Notoacmeibacteraceae Huang et al 2017 Parvibaculaceae Hordt et al 2020 Phreatobacteraceae Hordt et al 2020 Phyllobacteriaceae Mergaert and Swings 2006 Pleomorphomonadaceae Hordt et al 2020 Pseudoxanthobacteraceae Hordt et al 2020 Rhabdaerophilaceae Ming et al 2020 Rhizobiaceae Conn 1938 Approved Lists 1980 Rhodobiaceae Garrity et al 2006 Roseiarcaceae Kulichevskaya et al 2014 Salinarimonadaceae Cole et al 2018 Segnochrobactraceae Akter et al 2020 Stappiaceae Hordt et al 2020 Tepidamorphaceae Hordt et al 2020 Xanthobacteraceae Lee et al 2005 Unassigned Genera edit The following genus has not been assigned to a family Flaviflagellibacter Dong et al 2019 3 Provisional Taxa edit These taxa have been published but have not been validated according to the Bacteriological Code Nordella La Scola et al 2004 4 Propylenellaceae Liu et al 2021 5 Propylenella Liu et al 2021 5 Propylenella binzhouense Liu et al 2021 5 Thermopetrobacter Sislak 2013 6 Phylogeny editThe currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature 7 and the phylogeny is based on whole genome sequences 2 a Hyphomicrobiales ParvibaculaceaeHyphomicrobiaceaeAmorphaceaeRhodobiaceaeAfifellaceaeCohaesibacteraceaeBreoghaniaceaeStappiaceaeDevosiaceaeAurantimonadaceaeAhrensiaceaeNotoacmeibacteraceaePhyllobacteriaceaeRhizobiaceaeBartonellaceaePhyllobacterium b BrucellaceaeTepidamorphaceaeKaistiaceaePseudoxanthobacteraceaeProsthecomicrobium c PleomorphomonadaceaeBlastochloridaceaeXanthobacteraceaePhreatobacteraceaeNitrobacteraceaeBeijerinckiaceaeRoseiarcaceaeMethylocystaceaeChelatococcaceaeBoseaceaeSalinarimonadaceaeMethylobacteriaceaeoutgroups RhodobacteralesParvularculalesCaulobacteralesNatural genetic transformation editNatural genetic transformation has been reported in at least four Hyphomicrobiales species Agrobacterium tumefaciens 8 Methylobacterium organophilum 9 Ensifer adhaerens 10 and Bradyrhizobium japonicum 11 Natural genetic transformation is a sexual process involving DNA transfer from one bacterial cell to another through the intervening medium and the integration of the donor sequence into the recipient genome by homologous recombination See also editLar1Notes edit Aestuariivirgaceae Alsobacteraceae Ancalomicrobiaceae Lichenibacteriaceae Lichenihabitantaceae Rhabdaerophilaceae and Segnochrobactraceae are not included in this phylogenetic tree Phyllobacterium is separate from the rest of Phyllobacteriaceae Prosthecomicrobium is separate from the rest of Hyphomicrobiaceae References edit Parker CT Garrity GM 1 January 2003 Parker CT Garrity GM eds Taxonomic Abstract for the families Mabikibacteraceae The NamesforLife Abstracts NamesforLife LLC doi 10 1601 tx 30673 a b Hordt A Lopez MG Meier Kolthoff JP Schleuning M Weinhold LM Tindall BJ et al 2020 Analysis of 1 000 Type Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria Frontiers in Microbiology 11 468 doi 10 3389 fmicb 2020 00468 PMC 7179689 PMID 32373076 Dong L Han MX Wang D Liu F Asem MD Jiao JY Xiao M Salam N Li WJ 2019 Flaviflagellibacter deserti gen nov sp nov a novel member of the order Rhizobiales isolated from a desert soil Antonie van Leeuwenhoek 112 6 947 954 doi 10 1007 s10482 019 01228 0 PMID 30637538 S2CID 58006833 La Scola B Barrassi L Raoult D 2004 A novel alpha Proteobacterium Nordella oligomobilis gen nov sp nov isolated by using amoebal co cultures Res Microbiol 155 1 47 51 doi 10 1016 j resmic 2003 09 012 PMID 14759708 a b c Liu YL Meng D Wang F Gong XF Gu PF Fan XY Du ZJ Zou JD Li Q 2021 Propylenella binzhouense gen nov sp nov isolated from activated sludge and proposal of Propylenellaceae fam nov Antonie van Leeuwenhoek 114 3 225 233 doi 10 1007 s10482 020 01514 2 PMID 33400070 S2CID 230665484 Sislak CD 2013 Novel Thermophilic Bacteria Isolated From Marine Hydrothermal Vents MSc Portland State University doi 10 15760 etd 1485 1486 Euzeby JP Parte AC Hyphomicrobiales List of Prokaryotic names with Standing in Nomenclature LPSN Retrieved May 15 2021 Demaneche S Kay E Gourbiere F Simonet P June 2001 Natural transformation of Pseudomonas fluorescens and Agrobacterium tumefaciens in soil Applied and Environmental Microbiology 67 6 2617 21 Bibcode 2001ApEnM 67 2617D doi 10 1128 AEM 67 6 2617 2621 2001 PMC 92915 PMID 11375171 O Connor M Wopat A Hanson RS January 1977 Genetic transformation in Methylobacterium organophilum Journal of General Microbiology 98 1 265 72 doi 10 1099 00221287 98 1 265 PMID 401866 Zuniga Soto E Mullins E Dedicova B 2015 Ensifer mediated transformation an efficient non Agrobacterium protocol for the genetic modification of rice SpringerPlus 4 600 doi 10 1186 s40064 015 1369 9 PMC 4628045 PMID 26543735 Raina JL Modi VV August 1972 Deoxyribonucleate binding and transformation in Rhizobium jpaonicum Journal of Bacteriology 111 2 356 60 doi 10 1128 JB 111 2 356 360 1972 PMC 251290 PMID 4538250 Further reading editKuykendall LD Dazzo FB 2005 Allorhizobium In Brenner DJ Krieg NR Staley JT Garrity G eds The Alpha Beta Delta and Epsilonproteobacteria The Proteobacteria Part C Bergey s Manual of Systematic Bacteriology Vol 2 2nd ed Springer New York NY pp 345 346 ISBN 978 0 387 24144 9 Kuykendall LD 2005 Genus Azorhizobium In Brenner DJ Krieg NR Staley JT Garrity G eds The Alpha Beta Delta and Epsilonproteobacteria The Proteobacteria Part C Bergey s Manual of Systematic Bacteriology Vol 2 2nd ed Springer New York NY pp 505 506 ISBN 978 0 387 24144 9 Kuykendall LD 2005 Genus Bradyrhizobium family Bradyrhizobiaceae In Brenner DJ Krieg NR Staley JT Garrity G eds The Alpha Beta Delta and Epsilonproteobacteria The Proteobacteria Part C Bergey s Manual of Systematic Bacteriology Vol 2 2nd ed Springer New York NY pp 438 443 ISBN 978 0 387 24144 9 Kuykendall LD Young JM Martinez Romero Kerr A Sawada H 2005 Genus Rhizobium a highly divergent genus in a revised family In Brenner DJ Krieg NR Staley JT Garrity G eds The Alpha Beta Delta and Epsilonproteobacteria The Proteobacteria Part C Bergey s Manual of Systematic Bacteriology Vol 2 2nd ed Springer New York NY pp 324 340 ISBN 978 0 387 24144 9 Chen WX Wang ET Kuykendall LD 2005 enus Mesorhizobium Family Photobacteriaceae In Brenner DJ Krieg NR Staley JT Garrity G eds The Alpha Beta Delta and Epsilonproteobacteria The Proteobacteria Part C Bergey s Manual of Systematic Bacteriology Vol 2 2nd ed Springer New York NY pp 403 408 ISBN 978 0 387 24144 9 Retrieved from https en wikipedia org w index php title Hyphomicrobiales amp oldid 1200269382, wikipedia, wiki, book, books, library,

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