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Personal genomics

Personal genomics or consumer genetics is the branch of genomics concerned with the sequencing, analysis and interpretation of the genome of an individual. The genotyping stage employs different techniques, including single-nucleotide polymorphism (SNP) analysis chips (typically 0.02% of the genome), or partial or full genome sequencing. Once the genotypes are known, the individual's variations can be compared with the published literature to determine likelihood of trait expression, ancestry inference and disease risk.

Automated high-throughput sequencers have increased the speed and reduced the cost of sequencing, making it possible to offer whole genome sequencing including interpretation to consumers since 2015 for less than $1,000. The emerging market of direct-to-consumer genome sequencing services has brought new questions about both the medical efficacy and the ethical dilemmas associated with widespread knowledge of individual genetic information.

In personalized medicine Edit

Personalized medicine is a medical method that targets treatment structures and medicinal decisions based on a patient's predicted response or risk of disease.[1] The National Cancer Institute or NCI, an arm of the National Institutes of Health, lists a patient's genes, proteins, and environment as the primary factors analyzed to prevent, diagnose, and treat disease through personalized medicine.[1]

There are various subcategories of the concept of personalized medicine such as predictive medicine, precision medicine and stratified medicine. Although these terms are used interchangeably to describe this practice, each carries individual nuances. Predictive medicine describes the field of medicine that utilizes information, often obtained through personal genomics techniques, to both predict the possibility of disease, and institute preventative measures for a particular individual.[2] Precision medicine is a term very similar to personalized medicine in that it focuses on a patient's genes, environment, and lifestyle; however, it is utilized by National Research Council to avoid any confusion or misinterpretations associated with the broader term. Stratified medicine is a version of personalized medicine which focuses on dividing patients into subgroups based on specific responses to treatment, and identifying effective treatments for the particular group.[3]

Examples of the use of personalized medicine include oncogenomics and pharmacogenomics. Oncogenomics is a field of study focused on the characterization of cancer–related genes. With cancer, specific information about a tumor is used to help create a personalized diagnosis and treatment plan.[4] Pharmacogenomics is the study of how a person's genome affects their response to drugs.[5] This field is relatively new but growing fast due in part to an increase in funding for the NIH Pharmacogenomics Research Network. Since 2001, there has been an almost 550% increase in the number of research papers in PubMed related to the search terms pharmacogenomics and pharmacogenetics.[6] This field allows researchers to better understand how genetic differences will influence the body's response to a drug and inform which medicine is most appropriate for the patient. These treatment plans will be able to prevent or at least minimize the adverse drug reactions which are a, "significant cause of hospitalizations and deaths in the United States." Overall, researchers believe pharmacogenomics will allow physicians to better tailor medicine to the needs of the individual patient.[5] As of November 2016, the FDA has approved 204 drugs with pharmacogenetics information in its labeling. These labels may describe genotype-specific dosing instructions and risk for adverse events amongst other information.[7]

Disease risk may be calculated based on genetic markers and genome-wide association studies for common medical conditions, which are multifactorial and include environmental components in the assessment. Diseases which are individually rare (less than 200,000 people affected in the USA) are nevertheless collectively common (affecting roughly 8-10% of the US population[8]). Over 2500 of these diseases (including a few more common ones) have predictive genetics of sufficiently high clinical impact that they are recommended as medical genetic tests available for single genes (and in whole genome sequencing) and growing at about 200 new genetic diseases per year.[9]

Cost of sequencing an individual's genome Edit

 
Typical cost of sequencing a human-sized genome, on a logarithmic scale. Note the drastic trend faster than Moore's law beginning in January 2008 as post-Sanger sequencing came online at sequencing centers.[10]

The cost of sequencing a human genome is dropping rapidly, due to the continual development of new, faster, cheaper DNA sequencing technologies such as "next-generation DNA sequencing".

The National Human Genome Research Institute, an arm of the U.S. National Institutes of Health, has reported that the cost to sequence a whole human-sized genome has dropped from about $14 million in 2006 to below $1,500 by late 2015.[11]

There are 6 billion base pairs in the diploid human genome. Statistical analysis reveals that a coverage of approximately ten times is required to get coverage of both alleles in 90% human genome from 25 base pair reads with shotgun sequencing.[12] This means a total of 60 billion base pairs that must be sequenced. An Applied Biosystems SOLiD, Illumina or Helicos[13] sequencing machine can sequence 2 to 10 billion base pairs in each $8,000 to $18,000 run. The cost must also take into account personnel costs, data processing costs, legal, communications and other costs. One way to assess this is via commercial offerings. The first such whole diploid genome sequencing (6 billion bp, 3 billion from each parent) was from Knome and their price dropped from $350,000 in 2008 to $99,000 in 2009.[14][15] This inspects 3000-fold more bases of the genome than SNP chip-based genotyping, identifying both novel and known sequence variants, some relevant to personal health or ancestry.[16] In June 2009, Illumina announced the launch of its own Personal Full Genome Sequencing Service at a depth of 30X for $48,000 per genome.[17] In 2010, they cut the price to $19,500.[18]

In 2009, Complete Genomics of Mountain View announced that it would provide full genome sequencing for $5,000, from June 2009.[19] This will only be available to institutions, not individuals.[20] Prices are expected to drop further over the next few years through economies of scale and increased competition.[21][22] As of 2014, nearly complete exome sequencing was offered by Gentle for less than $2,000, including personal counseling along with the results.[23] As of late 2018, over a million human genomes have been nearly completely sequenced for as little as $200 per person,[24] and even under certain circumstances ultra-secure personal genomes for $0 each.[25] In those two cases, the actual cost is reduced because the data can be monetized for researchers.

The decreasing cost in general of genomic mapping has permitted genealogical sites to offer it as a service,[26] to the extent that one may submit one's genome to crowd sourced scientific endeavours such as OpenSNP[27] or DNA.land at the New York Genome Center, as examples of citizen science.[28] The Corpas family, led by scientist Manuel Corpas, developed the Corpasome project,[29] and encouraged by the low prices in genome sequencing, was the first example of citizen science crowd sourced analysis of personal genomes.[30]

The opening of genomic medical clinics at major US hospitals has raised questions about whether these services broaden existing inequities in the US healthcare system, including from practitioners such as Robert C. Green, director of the Preventive Genomics Clinic at Brigham and Women's Hospital.[31][32]

Ethical issues Edit

Genetic discrimination is discriminating on the basis of information obtained from an individual's genome. Genetic non-discrimination laws have been enacted in some US states[33] and at the federal level, by the Genetic Information Nondiscrimination Act (GINA). The GINA legislation prevents discrimination by health insurers and employers, but does not apply to life insurance or long-term care insurance. The passage of the Affordable Care Act in 2010 strengthened the GINA protections by prohibiting health insurance companies from denying coverage because of patient's "pre-existing conditions" and removing insurance issuers ability to adjust premium costs based on certain factors such as genetic diseases.[34] Given the ethical concerns about pre-symptomatic genetic testing of minors,[35][36][37][38] it is likely that personal genomics will first be applied to adults who can provide consent to undergo such testing, although genome sequencing is already proving valuable for children if any symptoms are present.[39]

There are also concerns regarding human genome research in developing countries. The tools for conducting whole genome analyses are generally found in high-income nations, necessitating partnerships between developed and developing countries in order to study the patients affected by certain diseases. The relevant tools for sharing access to the collected data are not equally accessible across low-income nations and without an established standard for this type of research, concerns over fairness to local researchers remain unsettled.[40]

Other issues Edit

Genetic privacy Edit

In the United States, biomedical research containing human subjects is governed by a baseline standard of ethics known as The Common Rule, which aims to protect a subject's privacy by requiring "identifiers" such as name or address to be removed from collected data.[41] A 2012 report by the Presidential Commission for the Study of Bioethical Issues stated, however, that "what constitutes 'identifiable' and 'de-identified' data is fluid and that evolving technologies and the increasing accessibility of data could allow de-identified data to become re-identified."[41] In fact, research has already shown that it is "possible to discover a study participant's identity by cross-referencing research data about him and his DNA sequence … [with] genetic genealogy and public-records databases."[42] This has led to calls for policy-makers to establish consistent guidelines and best practices for the accessibility and usage of individual genomic data collected by researchers.[43]

There is also controversy regarding the concerns with companies testing individual DNA. There are issues such as "leaking" information, the right to privacy and what responsibility the company has to ensure this does not happen. Regulation rules are not clearly laid out. What is still not determined is who legally owns the genome information: the company or the individual whose genome has been read. There have been published examples of personal genome information being exploited.[44] Additional privacy concerns, related to, e.g., genetic discrimination, loss of anonymity, and psychological impacts, have been increasingly pointed out by the academic community[44] as well as government agencies.[41]

Additional issues arise from the trade-off between public benefit from research sharing and exposure to data escape and re-identification. The Personal Genome Project (started in 2005) is among the few to make both genome sequences and corresponding medical phenotypes publicly available.[45][46]

Personalized genome utility Edit

Full genome sequencing holds large promise in the world of healthcare in the potential of precise and personalized medical treatments. This use of genetic information to select appropriate drugs is known as pharmacogenomics. This technology may allow treatments to be catered to the individual and the certain genetic predispositions they may have (such as personalized chemotherapy). Among the most impactful and actionable uses of personal genome information is the avoidance of hundreds of severe single-gene genetic disorders which endanger about 5% of newborns (with costs up to 20 million dollars),[47] for example elimination of Tay Sachs Disease via Dor Yeshorim. Another set of 59 genes vetted by the American College of Medical Genetics and Genomics (ACMG-59) are considered actionable in adults.[48]

At the same time, full sequencing of the genome can identify polymorphisms that are so rare and/or mild sequence change that conclusions about their impact are challenging, reinforcing the need to focus on the reliable and actionable alleles in the context of clinical care. Czech medical geneticist Eva Machácková writes: "In some cases it is difficult to distinguish if the detected sequence variant is a causal mutation or a neutral (polymorphic) variation without any effect on phenotype. The interpretation of rare sequence variants of unknown significance detected in disease-causing genes becomes an increasingly important problem."[49] In fact, researchers from the Exome Aggregation Consortium (ExAC) project estimated the average person to carry 54 genetic mutations that previously were assumed pathogenic, i.e. having 100% penetrance, but without any apparent negative health presentation.[50]

As with other new technologies, doctors can order genomic tests for which some are not correctly trained to interpret the results. Many are unaware of how SNPs respond to one another. This results in presenting the client with potentially misleading and worrisome results which could strain the already overloaded health care system. In theory, this might antagonize an individual to make uneducated decisions such as unhealthy lifestyle choices and family planning modifications. Negative results which may potentially be inaccurate, theoretically decrease the quality of life and mental health of the individual (such as increased depression and extensive anxiety).

Direct-to-consumer genetics Edit

Using microarrays for genotyping. The video shows the process of extracting genotypes from a human spit sample using microarrays as is done by most major direct-to-consumer genetics companies.

There are also three potential problems associated with the validity of personal genome kits. The first issue is the test's validity. Handling errors of the sample increases the likelihood for errors which could affect the test results and interpretation. The second affects the clinical validity, which could affect the test's ability to detect or predict associated disorders. The third problem is the clinical utility of personal genome kits and associated risks, and the benefits of introducing them into clinical practices.[51]

People need to be educated on interpreting their results and what they should be rationally taking from the experience. Concerns about customers misinterpreting health information was one of the reasons for the 2013 shutdown by the FDA of 23&Me's health analysis services.[52] It is not only the average person who needs to be educated in the dimensions of their own genomic sequence but also professionals, including physicians and science journalists, who must be provided with the knowledge required to inform and educate their patients and the public.[53][54][55] Examples of such efforts include the Personal Genetics Education Project (pgEd), the Smithsonian collaboration with NHGRI, and the MedSeq, BabySeq and MilSeq projects of Genomes to People, an initiative of Harvard Medical School and Brigham and Women's Hospital.

A major use of personal genomics outside the realm of health is that of ancestry analysis (see Genetic Genealogy), including evolutionary origin information such as neanderthal content.[56]

Popular culture Edit

The 1997 science fiction film GATTACA presents a near-future society where personal genomics is readily available to anyone, and explores its societal impact. Perfect DNA[57] is a novel that uses Dr Manuel Corpas' own experiences and expertise as genome scientist to begin exploring some of these tremendously challenging issues.

Other uses Edit

In 2018, police arrested Joseph James DeAngelo, the prime suspect for the Golden State Killer or East Area Rapist,[58] and William Earl Talbott II, the prime suspect in the murders of Jay Cook and Tanya Van Cuylenborg in 1987.[59] These arrests were based on the personal genomics uploaded to an open-source database, GEDmatch, which allowed investigators to compare DNA recovered from crime scenes to the DNA uploaded to the database by relatives of the suspect.[60][58] In December 2018, FamilyTreeDNA changed its terms of service to allow law enforcement to use their service to identify suspects of "a violent crime" or identify the remains of victims. The company confirmed it was working with the FBI on at least a handful of cases.[61] Since then, nearly 50 suspects in crimes of assault, rape or murder have been arrested using the same method.[62]

Personal genomics have also allowed investigators to identify previously unknown bodies using GEDmatch (the Buckskin Girl,[63] Lyle Stevik[64] and Joseph Newton Chandler III).[65]

See also Edit

References Edit

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personal, genomics, this, article, needs, more, reliable, medical, references, verification, relies, heavily, primary, sources, please, review, contents, article, appropriate, references, unsourced, poorly, sourced, material, challenged, removed, find, sources. This article needs more reliable medical references for verification or relies too heavily on primary sources Please review the contents of the article and add the appropriate references if you can Unsourced or poorly sourced material may be challenged and removed Find sources Personal genomics news newspapers books scholar JSTOR April 2012 Personal genomics or consumer genetics is the branch of genomics concerned with the sequencing analysis and interpretation of the genome of an individual The genotyping stage employs different techniques including single nucleotide polymorphism SNP analysis chips typically 0 02 of the genome or partial or full genome sequencing Once the genotypes are known the individual s variations can be compared with the published literature to determine likelihood of trait expression ancestry inference and disease risk Automated high throughput sequencers have increased the speed and reduced the cost of sequencing making it possible to offer whole genome sequencing including interpretation to consumers since 2015 for less than 1 000 The emerging market of direct to consumer genome sequencing services has brought new questions about both the medical efficacy and the ethical dilemmas associated with widespread knowledge of individual genetic information Contents 1 In personalized medicine 2 Cost of sequencing an individual s genome 3 Ethical issues 4 Other issues 4 1 Genetic privacy 4 2 Personalized genome utility 4 3 Direct to consumer genetics 5 Popular culture 6 Other uses 7 See also 8 References 9 BibliographyIn personalized medicine EditPersonalized medicine is a medical method that targets treatment structures and medicinal decisions based on a patient s predicted response or risk of disease 1 The National Cancer Institute or NCI an arm of the National Institutes of Health lists a patient s genes proteins and environment as the primary factors analyzed to prevent diagnose and treat disease through personalized medicine 1 There are various subcategories of the concept of personalized medicine such as predictive medicine precision medicine and stratified medicine Although these terms are used interchangeably to describe this practice each carries individual nuances Predictive medicine describes the field of medicine that utilizes information often obtained through personal genomics techniques to both predict the possibility of disease and institute preventative measures for a particular individual 2 Precision medicine is a term very similar to personalized medicine in that it focuses on a patient s genes environment and lifestyle however it is utilized by National Research Council to avoid any confusion or misinterpretations associated with the broader term Stratified medicine is a version of personalized medicine which focuses on dividing patients into subgroups based on specific responses to treatment and identifying effective treatments for the particular group 3 Examples of the use of personalized medicine include oncogenomics and pharmacogenomics Oncogenomics is a field of study focused on the characterization of cancer related genes With cancer specific information about a tumor is used to help create a personalized diagnosis and treatment plan 4 Pharmacogenomics is the study of how a person s genome affects their response to drugs 5 This field is relatively new but growing fast due in part to an increase in funding for the NIH Pharmacogenomics Research Network Since 2001 there has been an almost 550 increase in the number of research papers in PubMed related to the search terms pharmacogenomics and pharmacogenetics 6 This field allows researchers to better understand how genetic differences will influence the body s response to a drug and inform which medicine is most appropriate for the patient These treatment plans will be able to prevent or at least minimize the adverse drug reactions which are a significant cause of hospitalizations and deaths in the United States Overall researchers believe pharmacogenomics will allow physicians to better tailor medicine to the needs of the individual patient 5 As of November 2016 the FDA has approved 204 drugs with pharmacogenetics information in its labeling These labels may describe genotype specific dosing instructions and risk for adverse events amongst other information 7 Disease risk may be calculated based on genetic markers and genome wide association studies for common medical conditions which are multifactorial and include environmental components in the assessment Diseases which are individually rare less than 200 000 people affected in the USA are nevertheless collectively common affecting roughly 8 10 of the US population 8 Over 2500 of these diseases including a few more common ones have predictive genetics of sufficiently high clinical impact that they are recommended as medical genetic tests available for single genes and in whole genome sequencing and growing at about 200 new genetic diseases per year 9 Cost of sequencing an individual s genome Edit nbsp Typical cost of sequencing a human sized genome on a logarithmic scale Note the drastic trend faster than Moore s law beginning in January 2008 as post Sanger sequencing came online at sequencing centers 10 The cost of sequencing a human genome is dropping rapidly due to the continual development of new faster cheaper DNA sequencing technologies such as next generation DNA sequencing The National Human Genome Research Institute an arm of the U S National Institutes of Health has reported that the cost to sequence a whole human sized genome has dropped from about 14 million in 2006 to below 1 500 by late 2015 11 There are 6 billion base pairs in the diploid human genome Statistical analysis reveals that a coverage of approximately ten times is required to get coverage of both alleles in 90 human genome from 25 base pair reads with shotgun sequencing 12 This means a total of 60 billion base pairs that must be sequenced An Applied Biosystems SOLiD Illumina or Helicos 13 sequencing machine can sequence 2 to 10 billion base pairs in each 8 000 to 18 000 run The cost must also take into account personnel costs data processing costs legal communications and other costs One way to assess this is via commercial offerings The first such whole diploid genome sequencing 6 billion bp 3 billion from each parent was from Knome and their price dropped from 350 000 in 2008 to 99 000 in 2009 14 15 This inspects 3000 fold more bases of the genome than SNP chip based genotyping identifying both novel and known sequence variants some relevant to personal health or ancestry 16 In June 2009 Illumina announced the launch of its own Personal Full Genome Sequencing Service at a depth of 30X for 48 000 per genome 17 In 2010 they cut the price to 19 500 18 In 2009 Complete Genomics of Mountain View announced that it would provide full genome sequencing for 5 000 from June 2009 19 This will only be available to institutions not individuals 20 Prices are expected to drop further over the next few years through economies of scale and increased competition 21 22 As of 2014 nearly complete exome sequencing was offered by Gentle for less than 2 000 including personal counseling along with the results 23 As of late 2018 over a million human genomes have been nearly completely sequenced for as little as 200 per person 24 and even under certain circumstances ultra secure personal genomes for 0 each 25 In those two cases the actual cost is reduced because the data can be monetized for researchers The decreasing cost in general of genomic mapping has permitted genealogical sites to offer it as a service 26 to the extent that one may submit one s genome to crowd sourced scientific endeavours such as OpenSNP 27 or DNA land at the New York Genome Center as examples of citizen science 28 The Corpas family led by scientist Manuel Corpas developed the Corpasome project 29 and encouraged by the low prices in genome sequencing was the first example of citizen science crowd sourced analysis of personal genomes 30 The opening of genomic medical clinics at major US hospitals has raised questions about whether these services broaden existing inequities in the US healthcare system including from practitioners such as Robert C Green director of the Preventive Genomics Clinic at Brigham and Women s Hospital 31 32 Ethical issues EditGenetic discrimination is discriminating on the basis of information obtained from an individual s genome Genetic non discrimination laws have been enacted in some US states 33 and at the federal level by the Genetic Information Nondiscrimination Act GINA The GINA legislation prevents discrimination by health insurers and employers but does not apply to life insurance or long term care insurance The passage of the Affordable Care Act in 2010 strengthened the GINA protections by prohibiting health insurance companies from denying coverage because of patient s pre existing conditions and removing insurance issuers ability to adjust premium costs based on certain factors such as genetic diseases 34 Given the ethical concerns about pre symptomatic genetic testing of minors 35 36 37 38 it is likely that personal genomics will first be applied to adults who can provide consent to undergo such testing although genome sequencing is already proving valuable for children if any symptoms are present 39 There are also concerns regarding human genome research in developing countries The tools for conducting whole genome analyses are generally found in high income nations necessitating partnerships between developed and developing countries in order to study the patients affected by certain diseases The relevant tools for sharing access to the collected data are not equally accessible across low income nations and without an established standard for this type of research concerns over fairness to local researchers remain unsettled 40 Other issues EditGenetic privacy Edit Main article Genetic privacy In the United States biomedical research containing human subjects is governed by a baseline standard of ethics known as The Common Rule which aims to protect a subject s privacy by requiring identifiers such as name or address to be removed from collected data 41 A 2012 report by the Presidential Commission for the Study of Bioethical Issues stated however that what constitutes identifiable and de identified data is fluid and that evolving technologies and the increasing accessibility of data could allow de identified data to become re identified 41 In fact research has already shown that it is possible to discover a study participant s identity by cross referencing research data about him and his DNA sequence with genetic genealogy and public records databases 42 This has led to calls for policy makers to establish consistent guidelines and best practices for the accessibility and usage of individual genomic data collected by researchers 43 There is also controversy regarding the concerns with companies testing individual DNA There are issues such as leaking information the right to privacy and what responsibility the company has to ensure this does not happen Regulation rules are not clearly laid out What is still not determined is who legally owns the genome information the company or the individual whose genome has been read There have been published examples of personal genome information being exploited 44 Additional privacy concerns related to e g genetic discrimination loss of anonymity and psychological impacts have been increasingly pointed out by the academic community 44 as well as government agencies 41 Additional issues arise from the trade off between public benefit from research sharing and exposure to data escape and re identification The Personal Genome Project started in 2005 is among the few to make both genome sequences and corresponding medical phenotypes publicly available 45 46 Personalized genome utility Edit Full genome sequencing holds large promise in the world of healthcare in the potential of precise and personalized medical treatments This use of genetic information to select appropriate drugs is known as pharmacogenomics This technology may allow treatments to be catered to the individual and the certain genetic predispositions they may have such as personalized chemotherapy Among the most impactful and actionable uses of personal genome information is the avoidance of hundreds of severe single gene genetic disorders which endanger about 5 of newborns with costs up to 20 million dollars 47 for example elimination of Tay Sachs Disease via Dor Yeshorim Another set of 59 genes vetted by the American College of Medical Genetics and Genomics ACMG 59 are considered actionable in adults 48 At the same time full sequencing of the genome can identify polymorphisms that are so rare and or mild sequence change that conclusions about their impact are challenging reinforcing the need to focus on the reliable and actionable alleles in the context of clinical care Czech medical geneticist Eva Machackova writes In some cases it is difficult to distinguish if the detected sequence variant is a causal mutation or a neutral polymorphic variation without any effect on phenotype The interpretation of rare sequence variants of unknown significance detected in disease causing genes becomes an increasingly important problem 49 In fact researchers from the Exome Aggregation Consortium ExAC project estimated the average person to carry 54 genetic mutations that previously were assumed pathogenic i e having 100 penetrance but without any apparent negative health presentation 50 As with other new technologies doctors can order genomic tests for which some are not correctly trained to interpret the results Many are unaware of how SNPs respond to one another This results in presenting the client with potentially misleading and worrisome results which could strain the already overloaded health care system In theory this might antagonize an individual to make uneducated decisions such as unhealthy lifestyle choices and family planning modifications Negative results which may potentially be inaccurate theoretically decrease the quality of life and mental health of the individual such as increased depression and extensive anxiety Direct to consumer genetics Edit source source source source source source track Using microarrays for genotyping The video shows the process of extracting genotypes from a human spit sample using microarrays as is done by most major direct to consumer genetics companies There are also three potential problems associated with the validity of personal genome kits The first issue is the test s validity Handling errors of the sample increases the likelihood for errors which could affect the test results and interpretation The second affects the clinical validity which could affect the test s ability to detect or predict associated disorders The third problem is the clinical utility of personal genome kits and associated risks and the benefits of introducing them into clinical practices 51 People need to be educated on interpreting their results and what they should be rationally taking from the experience Concerns about customers misinterpreting health information was one of the reasons for the 2013 shutdown by the FDA of 23 amp Me s health analysis services 52 It is not only the average person who needs to be educated in the dimensions of their own genomic sequence but also professionals including physicians and science journalists who must be provided with the knowledge required to inform and educate their patients and the public 53 54 55 Examples of such efforts include the Personal Genetics Education Project pgEd the Smithsonian collaboration with NHGRI and the MedSeq BabySeq and MilSeq projects of Genomes to People an initiative of Harvard Medical School and Brigham and Women s Hospital A major use of personal genomics outside the realm of health is that of ancestry analysis see Genetic Genealogy including evolutionary origin information such as neanderthal content 56 Popular culture EditThe 1997 science fiction film GATTACA presents a near future society where personal genomics is readily available to anyone and explores its societal impact Perfect DNA 57 is a novel that uses Dr Manuel Corpas own experiences and expertise as genome scientist to begin exploring some of these tremendously challenging issues Other uses EditIn 2018 police arrested Joseph James DeAngelo the prime suspect for the Golden State Killer or East Area Rapist 58 and William Earl Talbott II the prime suspect in the murders of Jay Cook and Tanya Van Cuylenborg in 1987 59 These arrests were based on the personal genomics uploaded to an open source database GEDmatch which allowed investigators to compare DNA recovered from crime scenes to the DNA uploaded to the database by relatives of the suspect 60 58 In December 2018 FamilyTreeDNA changed its terms of service to allow law enforcement to use their service to identify suspects of a violent crime or identify the remains of victims The company confirmed it was working with the FBI on at least a handful of cases 61 Since then nearly 50 suspects in crimes of assault rape or murder have been arrested using the same method 62 Personal genomics have also allowed investigators to identify previously unknown bodies using GEDmatch the Buckskin Girl 63 Lyle Stevik 64 and Joseph Newton Chandler III 65 See also EditHuman genome Complete set of nucleic acid sequences for humans Human Genome Project Human genome sequencing programme Single nucleotide polymorphism Single nucleotide in genomic DNA at which different sequence alternatives exist Population genomics Large scale comparison of DNA sequences Whole genome sequencing Determining nearly the entirety of the DNA sequence of an organism s genome at a single time Bioinformatics Computational analysis of large complex sets of biological data Genomics Discipline in genetics Personalized medicine Medical model that tailors medical practices to the individual patient Systems biology Computational and mathematical modeling of complex biological systems TIARA database Database of personal genomics information Transcriptomics technologies Study of RNA transcripts Omics Suffix in biology Population groups in biomedicine Health based on racial identity Genomic counseling Personal medicine DNA encryption Hiding or perplexing genetic information by a computational method Elective genetic and genomic testingReferences Edit a b NCI Dictionary of Cancer Terms National Cancer Institute 2 February 2011 Retrieved 5 December 2016 Predictive medicine Latest research and news Nature www nature com Retrieved 5 December 2016 MRC Medical Research Council 3 March 2016 Stratified medicine www mrc ac uk Retrieved 5 December 2016 Strausberg Robert L Simpson Andrew J G Old Lloyd J Riggins Gregory J 27 May 2004 Oncogenomics and the development of new cancer therapies Nature 429 6990 469 474 Bibcode 2004Natur 429 469S doi 10 1038 nature02627 PMID 15164073 S2CID 37628107 a b Reference Genetics Home What is pharmacogenomics Genetics Home Reference Retrieved 5 December 2016 Johnson Julie A 5 December 2016 Pharmacogenetics in clinical practice how far have we come and where are we going Pharmacogenomics 14 7 835 843 doi 10 2217 pgs 13 52 PMC 3697735 PMID 23651030 Research Center for Drug Evaluation and Genomics Table of Pharmacogenomic Biomarkers in Drug Labeling www fda gov Retrieved 5 December 2016 NIH Office of Rare Disease Research Gene Tests Wetterstrand Kris 21 May 2012 DNA Sequencing Costs Data from the NHGRI Large Scale Genome Sequencing Program Large Scale Genome Sequencing Program National Human Genome Research Institute Retrieved 24 May 2012 The Cost of Sequencing a Human Genome National Human Genome Research Institute NHGRI Retrieved 5 December 2016 Wheeler David A Srinivasan Maithreyan Egholm Michael Shen Yufeng Chen Lei McGuire Amy He Wen Chen Yi Ju Makhijani Vinod Roth G Thomas Gomes Xavier Tartaro Karrie Niazi Faheem Turcotte Cynthia L Irzyk Gerard P Lupski James R Chinault Craig Song Xing zhi Liu Yue Yuan Ye Nazareth Lynne Qin Xiang Muzny Donna M Margulies Marcel Weinstock George M Gibbs Richard A Rothberg Jonathan M 2008 JDW genome supp mat march proof doc PDF Nature 452 7189 872 876 Bibcode 2008Natur 452 872W doi 10 1038 nature06884 PMID 18421352 S2CID 4429736 Retrieved 19 October 2011 True Single Molecule Sequencing tSMS Helicos BioSciences Helicosbio com Archived from the original on 4 October 2011 Retrieved 19 October 2011 Knome Lowers Price of Full Genome From 350 000 to 99 000 The Genetic Genealogist 11 April 2009 Karow Julia 19 May 2009 Knome Adds Exome Sequencing Starts Offering Services to Researchers GenomeWeb Retrieved 24 February 2010 Harmon Katherine 28 June 2010 Genome Sequencing for the Rest of Us Scientific American Retrieved 13 August 2010 Individual genome 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Whole Genome For Just 200 Wired Sharon Begley 15 November 2018 Offering free DNA sequencing Nebula Genomics opens for business But there s an itsy bitsy catch Stat Kaplan Sarah 17 April 2016 How do your 20 000 genes determine so many wildly different traits They multitask The Washington Post Retrieved 27 August 2016 Greshake Bastian 2014 openSNP A Crowdsourced Web Resource for Personal Genomics PLOS ONE 9 3 e89204 Bibcode 2014PLoSO 989204G doi 10 1371 journal pone 0089204 PMC 3960092 PMID 24647222 Zimmer Carl 25 July 2016 Game of Genomes Episode 13 Answers and Questions STAT Retrieved 27 August 2016 Corpas Manuel 2013 Crowdsourcing the Corpasome Source Code for Biology and Medicine 8 1 13 doi 10 1186 1751 0473 8 13 PMC 3706263 PMID 23799911 Corpas M Valdivia Granda W Torres N Greshake B Coletta A Knaus A Harrison AP Cariaso M Moran F Nielsen F Swan D Weiss Solis DY Krawitz P Schacherer F Schols P Yang H Borry P Glusman G Robinson PN November 2015 Crowdsourced direct to consumer genomic 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Presymptomatic and predictive genetic testing in minors a systematic review of guidelines and position papers Clin Genet 70 5 374 81 doi 10 1111 j 1399 0004 2006 00692 x PMID 17026616 S2CID 7066285 Mark Johnson amp Kathleen Gallagher 27 February 2011 One in a Billion Nic Volker case may be the leading edge of a wave moving across genetic medicine Milwaukee Journal Sentinel de Vries Jantina Bull Susan J Doumbo Ogobara Ibrahim Muntaser Mercereau Puijalon Odile Kwiatkowski Dominic Parker Michael 18 March 2011 Ethical issues in human genomics research in developing countries BMC Medical Ethics 12 5 doi 10 1186 1472 6939 12 5 PMC 3076260 PMID 21418562 a b c Privacy and Progress in Whole Genome Sequencing Presidential Commission for the Study of Bioethical Issues Archived from the original on 22 November 2016 Retrieved 30 November 2016 Check Hayden Erika 2013 Privacy loophole found in genetic databases Nature doi 10 1038 nature 2013 12237 S2CID 211729032 Gutmann Amy Wagner James W 1 May 2013 Found Your DNA on the Web Reconciling Privacy and Progress Hastings Center Report 43 3 15 18 doi 10 1002 hast 162 PMID 23650063 a b De Cristofaro Emiliano 17 October 2012 Whole Genome Sequencing Innovation Dream or Privacy Nightmare arXiv 1210 4820 cs CR Mao Q Ciotlos S Zhang RY Ball MP Chin R Carnevali P Barua N Nguyen S Agarwal MR Clegg T Connelly A Vandewege W Zaranek AW Estep PW Church GM Drmanac R Peters BA 2016 The whole genome sequences and experimentally phased haplotypes of over 100 personal genomes GigaScience 5 1 42 doi 10 1186 s13742 016 0148 z PMC 5057367 PMID 27724973 a href Template Cite journal html title Template Cite journal cite journal a CS1 maint multiple names authors list link Cai B Li B Kiga N Thusberg J Bergquist T Chen Y Niknafs N Carter H Tokheim C Beleva Guthrie V Douville C Bhattacharya R Yeo HTG Fan J Sengupta S Kim D Cline M Turner T Diekhans M Zaucha J Pal L Cao C Yu C Yin Y Carraro M Giollo M Ferrari C Leonardi E Tosatto SCE Bobe J Ball M Hoskins R Repo S Church G Brenner S Moult J Gough J Stanke M Karchin R Mooney SD 2016 Matching Phenotypes to Whole Genomes Lessons Learned from Three Iterations of the Personal Genome Project Community Challenges Human Mutation 38 9 1266 1276 doi 10 1002 humu 23265 PMC 5645203 PMID 28544481 a href Template Cite journal html title Template Cite journal cite journal a CS1 maint multiple names authors list link Randy Shore 4 May 2014 Genome sequencing A costly way to save Vancouver Sun ACMG Updates Secondary Findings Gene List GenomeWeb 17 November 2016 Machackova E 1 March 2003 Disease causing mutations versus neutral polymorphism use of bioinformatics and DNA diagnosis Casopis Lekaru Ceskych 142 3 150 153 PMID 12756842 Check Hayden Erika 2016 Rethink the links between genes and disease The ExAC database has shown that many mutations thought to be harmful are benign Nature 538 7624 140 doi 10 1038 538140a PMID 27734882 Hunter David J Khoury Muin J Drazen Jeffrey M 10 January 2008 Letting the Genome out of the Bottle Will We Get Our Wish New England Journal of Medicine 358 2 105 107 doi 10 1056 NEJMp0708162 PMID 18184955 Copeland CS May June 2014 What a Tangled Web We Weave PDF Healthcare Journal of Little Rock Lunshof Jeantine Mardis Elaine Retrieved from http www future science group com img pics Mardis Forward pdf permanent dead link Navigenics How it works Future Medicine Magazine Retrieved 30 March 2012 Roberts J Scott Gornick Michele C et al Retrieved from http www genomes2people org wp content uploads 2017 01 Roberts et al PGen PHG 2017 pdf Direct to Consumer Genetic Testing User Motivations Decision Making and Perceived Utility of Results Public Health Genomics Retrieved 20 February 2017 Corpas Manuel 6 January 2012 A Family Experience of Personal Genomics Journal of Genetic Counseling 21 3 368 391 doi 10 1007 s10897 011 9473 7 PMID 22223063 S2CID 10845045 Copeland CS March April 2014 Individual Freedom Public Safety and the Complex Frontier of Personal Genomics PDF Healthcare Journal of New Orleans Manuel Corpas 2016 Perfect DNA Cambridge DNAdigest ISBN 978 1539783725 a b Arango Tim Goldman Adam Fuller Thomas 27 April 2018 To Catch a Killer A Fake Profile on a DNA Site and a Pristine Sample The New York Times Zhang Sarah 19 May 2018 The Coming Wave of Murders Solved by Genealogy The Atlantic Retrieved 22 June 2018 What does the Golden State Killer arrest mean for genetic privacy STAT 26 April 2018 Haag Matthew 4 February 2019 FamilyTreeDNA Admits to Sharing Genetic Data With F B I The New York Times ISSN 0362 4331 Retrieved 11 February 2019 Bala Nila 18 March 2019 Criminal Suspects Deserve Genetic Privacy Too Slate Magazine Buck Skin Girl Case Break Is Success of New DNA Doe Project Forensic Magazine 16 April 2018 Retrieved 22 June 2018 DNA Doe Project IDs 2001 Motel Suicide Using Genealogy Forensic Magazine 9 May 2018 Retrieved 22 June 2018 Caniglia John 21 June 2018 Authorities solve cold case of war hero who hid behind dead boy s identity cleveland com Retrieved 22 June 2018 Bibliography EditDudley amp Karczewski 2013 Exploring Personal Genomics Oxford University Press ISBN 978 0199644490 Archived from the original on 1 December 2012 Sweet K Michaelis R May 2011 The Busy Physician s Guide to Genetics Genomics and Personalized Medicine 1st ed Springer Scientific Press ISBN 978 94 007 1147 1 Cadwalladr Carole 8 June 2013 What happened when I had my genome sequenced The Guardian Retrieved 10 July 2013 Manuel Corpas 2016 Perfect DNA CreateSpace Independent Publishing Platform ISBN 978 1539783725 ASIN 1539783723 Portals nbsp Biology nbsp Medicine Retrieved from https en wikipedia org w index php title Personal genomics amp oldid 1137466258, wikipedia, wiki, book, books, library,

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