Pentose phosphate pathway

The pentose phosphate pathway (also called the phosphogluconate pathway and the hexose monophosphate shunt and the HMP Shunt) is a metabolic pathway parallel to glycolysis.^[1] It generates NADPH and pentoses (5-carbon sugars) as well as ribose 5-phosphate, a precursor for the synthesis of nucleotides.^[2] While the pentose phosphate pathway does involve oxidation of glucose, its primary role is anabolic rather than catabolic. The pathway is especially important in red blood cells (erythrocytes).

The pentose phosphate pathway

There are two distinct phases in the pathway. The first is the oxidative phase, in which NADPH is generated, and the second is the non-oxidative synthesis of 5-carbon sugars. For most organisms, the pentose phosphate pathway takes place in the cytosol; in plants, most steps take place in plastids.^[3]

Like glycolysis, the pentose phosphate pathway appears to have a very ancient evolutionary origin. The reactions of this pathway are mostly enzyme-catalyzed in modern cells, however, they also occur non-enzymatically under conditions that replicate those of the Archean ocean, and are catalyzed by metal ions, particularly ferrous ions (Fe(II)).^[4] This suggests that the origins of the pathway could date back to the prebiotic world.

Outcome

The primary results of the pathway are:

• The generation of reducing equivalents, in the form of NADPH, used in reductive biosynthesis reactions within cells (e.g. fatty acid synthesis).
• Production of ribose 5-phosphate (R5P), used in the synthesis of nucleotides and nucleic acids.
• Production of erythrose 4-phosphate (E4P) used in the synthesis of aromatic amino acids.

Aromatic amino acids, in turn, are precursors for many biosynthetic pathways, including the lignin in wood.^{[citation needed]}

Dietary pentose sugars derived from the digestion of nucleic acids may be metabolized through the pentose phosphate pathway, and the carbon skeletons of dietary carbohydrates may be converted into glycolytic/gluconeogenic intermediates.

In mammals, the PPP occurs exclusively in the cytoplasm. In humans, it is found to be most active in the liver, mammary glands, and adrenal cortex.^{[citation needed]} The PPP is one of the three main ways the body creates molecules with reducing power, accounting for approximately 60% of NADPH production in humans.^{[citation needed]}

One of the uses of NADPH in the cell is to prevent oxidative stress. It reduces glutathione via glutathione reductase, which converts reactive H₂O₂ into H₂O by glutathione peroxidase. If absent, the H₂O₂ would be converted to hydroxyl free radicals by Fenton chemistry, which can attack the cell. Erythrocytes, for example, generate a large amount of NADPH through the pentose phosphate pathway to use in the reduction of glutathione.

Hydrogen peroxide is also generated for phagocytes in a process often referred to as a respiratory burst.^[5]

Phases

Oxidative phase

In this phase, two molecules of NADP⁺ are reduced to NADPH, utilizing the energy from the conversion of glucose-6-phosphate into ribulose 5-phosphate.

 

Oxidative phase of pentose phosphate pathway.
Glucose-6-phosphate (1), 6-phosphoglucono-δ-lactone (2), 6-phosphogluconate (3), ribulose 5-phosphate (4)

The entire set of reactions can be summarized as follows:

Reactants	Products	Enzyme	Description
Glucose 6-phosphate + NADP+	→ 6-phosphoglucono-δ-lactone + NADPH	glucose 6-phosphate dehydrogenase	Dehydrogenation. The hydroxyl on carbon 1 of glucose 6-phosphate turns into a carbonyl, generating a lactone, and, in the process, NADPH is generated.
6-phosphoglucono-δ-lactone + H2O	→ 6-phosphogluconate + H^+	6-phosphogluconolactonase	Hydrolysis
6-phosphogluconate + NADP^+	→ ribulose 5-phosphate + NADPH + CO2	6-phosphogluconate dehydrogenase	Oxidative decarboxylation. NADP^+ is the electron acceptor, generating another molecule of NADPH, a CO2, and ribulose 5-phosphate.

The overall reaction for this process is:

Glucose 6-phosphate + 2 NADP⁺ + H₂O → ribulose 5-phosphate + 2 NADPH + 2 H⁺ + CO₂

Non-oxidative phase

 

The pentose phosphate pathway's nonoxidative phase

Reactants	Products	Enzymes
ribulose 5-phosphate	→ ribose 5-phosphate	Ribose-5-phosphate isomerase
ribulose 5-phosphate	→ xylulose 5-phosphate	Ribulose 5-Phosphate 3-Epimerase
xylulose 5-phosphate + ribose 5-phosphate	→ glyceraldehyde 3-phosphate + sedoheptulose 7-phosphate	transketolase
sedoheptulose 7-phosphate + glyceraldehyde 3-phosphate	→ erythrose 4-phosphate + fructose 6-phosphate	transaldolase
xylulose 5-phosphate + erythrose 4-phosphate	→ glyceraldehyde 3-phosphate + fructose 6-phosphate	transketolase

Net reaction: 3 ribulose-5-phosphate → 1 ribose-5-phosphate + 2 xylulose-5-phosphate → 2 fructose-6-phosphate + glyceraldehyde-3-phosphate

Regulation

Glucose-6-phosphate dehydrogenase is the rate-controlling enzyme of this pathway^{[citation needed]}. It is allosterically stimulated by NADP⁺ and strongly inhibited by NADPH. ^[6] The ratio of NADPH:NADP⁺ is the primary mode of regulation for the enzyme and is normally about 100:1 in liver cytosol^{[citation needed]}. This makes the cytosol a highly-reducing environment. An NADPH-utilizing pathway forms NADP⁺, which stimulates Glucose-6-phosphate dehydrogenase to produce more NADPH. This step is also inhibited by acetyl CoA.^{[citation needed]}

G6PD activity is also post-translationally regulated by cytoplasmic deacetylase SIRT2. SIRT2-mediated deacetylation and activation of G6PD stimulates oxidative branch of PPP to supply cytosolic NADPH to counteract oxidative damage or support de novo lipogenesis.^[7][8]

Erythrocytes

Several deficiencies in the level of activity (not function) of glucose-6-phosphate dehydrogenase have been observed to be associated with resistance to the malarial parasite Plasmodium falciparum among individuals of Mediterranean and African descent. The basis for this resistance may be a weakening of the red cell membrane (the erythrocyte is the host cell for the parasite) such that it cannot sustain the parasitic life cycle long enough for productive growth.^[9]

See also

• G6PD deficiency – A hereditary disease that disrupts the pentose phosphate pathway
• RNA
• Thiamine deficiency
• Frank Dickens FRS

References

1. Alfarouk, Khalid O.; Ahmed, Samrein B. M.; Elliott, Robert L.; Benoit, Amanda; Alqahtani, Saad S.; Ibrahim, Muntaser E.; Bashir, Adil H. H.; Alhoufie, Sari T. S.; Elhassan, Gamal O.; Wales, Christian C.; Schwartz, Laurent H.; Ali, Heyam S.; Ahmed, Ahmed; Forde, Patrick F.; Devesa, Jesus; Cardone, Rosa A.; Fais, Stefano; Harguindey, Salvador; Reshkin, Stephan J. (2020). "The Pentose Phosphate Pathway Dynamics in Cancer and Its Dependency on Intracellular pH". Metabolites. 10 (7): 285. doi:10.3390/metabo10070285. PMC 7407102. PMID 32664469.
2. Alfarouk, Khalid O.; Ahmed, Samrein B. M.; Elliott, Robert L.; Benoit, Amanda; Alqahtani, Saad S.; Ibrahim, Muntaser E.; Bashir, Adil H. H.; Alhoufie, Sari T. S.; Elhassan, Gamal O.; Wales, Christian C.; Schwartz, Laurent H.; Ali, Heyam S.; Ahmed, Ahmed; Forde, Patrick F.; Devesa, Jesus; Cardone, Rosa A.; Fais, Stefano; Harguindey, Salvador; Reshkin, Stephan J. (2020). "The Pentose Phosphate Pathway Dynamics in Cancer and Its Dependency on Intracellular pH". Metabolites. 10 (7): 285. doi:10.3390/metabo10070285. PMC 7407102. PMID 32664469.
3. Kruger, Nicholas J; von Schaewen, Antje (June 2003). "The oxidative pentose phosphate pathway: structure and organisation". Current Opinion in Plant Biology. 6 (3): 236–246. doi:10.1016/S1369-5266(03)00039-6. PMID 12753973.
4. Keller, Markus A.; Turchyn, Alexandra V.; Ralser, Markus (25 April 2014). "Non-enzymatic glycolysis and pentose phosphate pathway-like reactions in a plausible Archean ocean". Molecular Systems Biology. 10 (4): 725. doi:10.1002/msb.20145228. PMC 4023395. PMID 24771084.
5. Immunology at MCG 1/cytotox
6. Voet Donald; Voet Judith G (2011). Biochemistry (4th ed.). p. 894. ISBN 978-0470-57095-1.
7. Wang YP, Zhou LS, Zhao YZ, Wang SW, Chen LL, Liu LX, Ling ZQ, Hu FJ, Sun YP, Zhang JY, Yang C, Yang Y, Xiong Y, Guan KL, Ye D (June 2014). "Regulation of G6PD acetylation by SIRT2 and KAT9 modulates NADPH homeostasis and cell survival during oxidative stress". EMBO Journal. 33 (12): 1304–20. doi:10.1002/embj.201387224. PMC 4194121. PMID 24769394.
8. Xu SN, Wang TS, Li X, Wang YP (Sep 2016). "SIRT2 activates G6PD to enhance NADPH production and promote leukaemia cell proliferation". Sci Rep. 6: 32734. Bibcode:2016NatSR...632734X. doi:10.1038/srep32734. PMC 5009355. PMID 27586085.
9. Cappadoro M, Giribaldi G, O'Brien E, et al. (October 1998). "Early phagocytosis of glucose-6-phosphate dehydrogenase (G6PD)-deficient erythrocytes parasitized by Plasmodium falciparum may explain malaria protection in G6PD deficiency". Blood. 92 (7): 2527–34. doi:10.1182/blood.V92.7.2527. PMID 9746794.

External links

• The chemical logic behind the pentose phosphate pathway
• Pentose+Phosphate+Pathway at the U.S. National Library of Medicine Medical Subject Headings (MeSH)
• Pentose phosphate pathway Map – Homo sapiens