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Nitrospirota

Nitrospirota is a phylum of bacteria. It includes multiple genera, such as Nitrospira, the largest. The first member of this phylum, Nitrospira marina, was discovered in 1985.[2] The second member, Nitrospira moscoviensis, was discovered in 1995.[3][4]

Nitrospirota
Scientific classification
Domain: Bacteria
Phylum: Nitrospirota
Garrity & Holt 2021[1]
Classes & Orders
  • "Leptospirillia"
    • "Leptospirillales"
  • Nitrospiria
  • "Thermodesulfovibrionia"
    • "Thermodesulfovibrionales"
Synonyms
  • "Nitrospirae" Garrity and Holt 2001
  • "Nitrospiraeota" Oren et al. 2015
  • "Nitrospirota" Whitman et al. 2018

Nitrospirota contains nitrifying taxa which oxidize nitrite to nitrate (nitrite-oxidizing bacteria, NOB[5]) and commamox bacteria Nitrospira inopinata discovered in 2015[6][7] and cultivated in 2017.[8]

Phylogeny edit

16S rRNA based LTP_08_2023[9][10][11] 120 single copy marker proteins based GTDB 08-RS214[12][13][14]
Nitrospirota
"Leptospirillia"
"Leptospirillaceae"
Leptospirillum
"Leptospirillales"
Thermodesulfovibrionia
Dissulfurispiraceae

Dissulfurispira thermophila

Thermodesulfovibrionaceae

T. hydrogeniphilus

T. aggregans

T. thiophilus

T. islandicus

T. yellowstonii

Thermodesulfovibrio
Thermodesulfovibrionales
"Leptospirillaeota"
"Leptospirillales"
"Leptospirillum"
"Leptospirillaceae"
"Leptospirillia"
Nitrospirota
"Thermodesulfovibrionia"
"Magnetobacteriaceae"

"Ca. Magnetobacterium casense"

"Ca. Magnetominusculus xianensis"

"Sulfobiaceae"

"Ca. Sulfobium mesophilum"

Dissulfurispiraceae

Dissulfurispira thermophila

Thermodesulfovibrionaceae

T. thiophilus

T. aggregans

T. yellowstonii

Thermodesulfovibrio
"Thermodesulfovibrionales"
"Nitrospiria"
"Troglogloeales"

"Ca. Manganitrophus noduliformans"

"Manganitrophaceae"
"Nitrospirales"
Nitrospira

"N. defluvii"

"N. japonica"

"N. lenta"

N. moscoviensis

"Ca. N. inopinata"

"Ca. N. kreftii"

"Ca. N. nitrosa"

"Ca. N. nitrificans"

"Nitrospiraceae"

Taxonomy edit

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LSPN)[15] and the National Center for Biotechnology Information (NCBI).[4]

  • Phylum "Nitrospirota" Garrity & Holt 2021
    • Genus "Candidatus Magnetocorallium" Zhao et al. 2023
      • Species "Ca. M. paracelense" Zhao et al. 2023
    • Genus "Candidatus Magnetomicrobium" Zhang et al. 2021
      • Species "Ca. M. cryptolimnococcus" Zhang et al. 2021
    • Genus "Candidatus Nitrobium" Arshad et al. 2017
      • Species "Ca. N. versatile" Arshad et al. 2017
    • Genus "Candidatus Thermomagnetovibrio" Lefèvre et al. 2010
      • Species "Ca. T. paiutensis" Lefèvre et al. 2010
    • Class "Leptospirillia"
      • Order "Leptospirillales"
        • Family "Leptospirillaceae" Cavalier-Smith 2020
          • Genus Leptospirillum Markosyan 1972 ex Hippe 2000
            • Species "L. ferrodiazotrophum" Tyson et al. 2005
            • Species L. ferriphilum Coram & Rawlings 2002
            • Species L. ferrooxidans Markosyan 1972 ex Hippe 2000
            • Species "L. rubarum" Aliaga Goltsman et al. 2009
            • Species L. thermoferrooxidans Hippe 2000
    • Class Nitrospiria Oren et al. 2015
      • Order "Nitrospirales" Garrity & Holt 2001
        • Family "Nitrospiraceae" Garrity & Holt 2001
          • Genus "Candidatus Nitronereus" Mueller et al. 2023
            • Species "Ca. N. thalassa" Mueller et al. 2023
          • Genus "Candidatus Porinitrospira" Taylor et al. 2022
            • Species "Ca. P. cymbastela" Taylor et al. 2022
          • Genus Nitrospira Watson et al. 1986
            • Species "Ca. N. alkalitolerans" Daebeler et al. 2020
            • Species "Ca. N. bockiana" Lebedeva et al. 2008
            • Species N. calida Lebedeva et al. 2011
            • Species N. defluvii Nowka et al. 2015
            • Species "Ca. N. inopinata" Daims et al. 2015
            • Species N. japonica Ushiki et al. 2013
            • Species "Ca. N. kreftii" Sakoula et al. 2021
            • Species N. lenta Nowka et al. 2015
            • Species N. marina Watson et al. 1986 (type sp.)
            • Species N. moscoviensis Ehrich et al. 1995
            • Species "Ca. N. nitrificans" van Kessel et al. 2015
            • Species "Ca. N. nitrosa" van Kessel et al. 2015
            • Species "Ca. N. salsa" Haaijer et al. 2013
      • Order "Troglogloeales" Yu et al. 2022
        • Genus "Candidatus Troglogloea" corrig. Kostanjsek et al. 2013
          • Species "Ca. T. absolonii" corrig. Kostanjsek et al. 2013
        • Family "Manganitrophaceae" Yu et al. 2022
          • Genus "Candidatus Manganitrophus" Yu & Leadbetter 2020
            • Species "Ca. M. morganii" Yu et al. 2022
            • Species "Ca. M. noduliformans" Yu & Leadbetter 2020
    • Class Thermodesulfovibrionia Umezawa et al. 2021
      • Order "Mariimomonadales" Yoon et al. 2023
        • Family "Mariimomonadaceae" Yoon et al. 2023
          • Genus "Ca. Mariimomonas Yoon et al. 2023
            • Species "Ca. M. ferrooxydans" Yoon et al. 2023
      • Order "Thermodesulfovibrionales" Umezawa et al. 2021
        • Family Dissulfurispiraceae Umezawa et al. 2021
          • Genus Dissulfurispira Umezawa et al. 2021
            • Species D. thermophila Umezawa et al. 2021
        • Family Thermodesulfovibrionaceae Umezawa et al. 2021
          • Genus "Candidatus Magnetobacterium" Spring et al. 1993
            • Species "Ca. M. bavaricum" Spring et al. 1993
            • Species "Ca. M. casense" corrig. Lin et al. 2014
          • Genus "Candidatus Magnetominusculus" Lin et al. 2017
            • Species "Ca. M. xianensis" Lin et al. 2017
          • Genus "Candidatus Magnetovum" corrig. Lefevre et al. 2011
            • Species "Ca. M. chiemensis" Kolinko 2014
            • Species "Ca. M. mohavensis" Lefevre et al. 2011
          • Genus "Candidatus Sulfobium" Zecchin et al. 2018
            • Species "Ca. S. mesophilum" Zecchin et al. 2018
          • Genus Thermodesulfovibrio Henry et al. 1994 emend. Sekiguchi et al. 2008
            • Species T. aggregans Sekiguchi et al. 2008
            • Species T. hydrogeniphilus Haouari et al. 2009
            • Species T. islandicus Sonne-Hansen and Ahring 2000
            • Species T. thiophilus Sekiguchi et al. 2008
            • Species T. yellowstonii Henry et al. 1994 (type sp.)

See also edit

References edit

  1. ^ Oren A, Garrity GM (2021). "Valid publication of the names of forty-two phyla of prokaryotes". Int J Syst Evol Microbiol. 71 (10): 5056. doi:10.1099/ijsem.0.005056. PMID 34694987.
  2. ^ Watson SW, Bock E, Valois FW, Waterbury JB, Schlosser U (1986). "Nitrospira marina gen. nov. sp. nov.: a chemolithotrophic nitrite-oxidizing bacterium". Arch Microbiol. 144 (1): 1–7. doi:10.1007/BF00454947. S2CID 29796511.
  3. ^ Ehrich S, Behrens D, Lebedeva E, Ludwig W, Bock E (July 1995). "A new obligately chemolithoautotrophic, nitrite-oxidizing bacterium, Nitrospira moscoviensis sp. nov. and its phylogenetic relationship". Archives of Microbiology. 164 (1): 16–23. doi:10.1007/BF02568729. PMID 7646315. S2CID 2702110.
  4. ^ a b Sayers. "Nitrospirae". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2016-03-20.
  5. ^ Daims H, Nielsen JL, Nielsen PH, Schleifer KH, Wagner M (November 2001). "In situ characterization of Nitrospira-like nitrite-oxidizing bacteria active in wastewater treatment plants". Applied and Environmental Microbiology. 67 (11): 5273–84. Bibcode:2001ApEnM..67.5273D. doi:10.1128/AEM.67.11.5273-5284.2001. PMC 93301. PMID 11679356.
  6. ^ Daims H, Lebedeva EV, Pjevac P, Han P, Herbold C, Albertsen M, et al. (December 2015). "Complete nitrification by Nitrospira bacteria". Nature. 528 (7583): 504–9. Bibcode:2015Natur.528..504D. doi:10.1038/nature16461. PMC 5152751. PMID 26610024.
  7. ^ van Kessel MA, Speth DR, Albertsen M, Nielsen PH, Op den Camp HJ, Kartal B, et al. (December 2015). "Complete nitrification by a single microorganism". Nature. 528 (7583): 555–9. Bibcode:2015Natur.528..555V. doi:10.1038/nature16459. PMC 4878690. PMID 26610025.
  8. ^ Kits KD, Sedlacek CJ, Lebedeva EV, Han P, Bulaev A, Pjevac P, et al. (September 2017). "Kinetic analysis of a complete nitrifier reveals an oligotrophic lifestyle". Nature. 549 (7671): 269–272. Bibcode:2017Natur.549..269K. doi:10.1038/nature23679. PMC 5600814. PMID 28847001.
  9. ^ "The LTP". Retrieved 20 November 2023.
  10. ^ "LTP_all tree in newick format". Retrieved 20 November 2023.
  11. ^ "LTP_08_2023 Release Notes" (PDF). Retrieved 20 November 2023.
  12. ^ "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.
  13. ^ "bac120_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.
  14. ^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.
  15. ^ Euzéby JP. ""Nitrospirae"". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2016-03-20.

Further reading edit

  • Lefèvre CT, Frankel RB, Abreu F, Lins U, Bazylinski DA (February 2011). "Culture-independent characterization of a novel, uncultivated magnetotactic member of the Nitrospirae phylum". Environmental Microbiology. 13 (2): 538–49. doi:10.1111/j.1462-2920.2010.02361.x. PMID 20977572.

External links edit

  • "Leptospirillum sp".

nitrospirota, phylum, bacteria, includes, multiple, genera, such, nitrospira, largest, first, member, this, phylum, nitrospira, marina, discovered, 1985, second, member, nitrospira, moscoviensis, discovered, 1995, scientific, classification, domain, bacteria, . Nitrospirota is a phylum of bacteria It includes multiple genera such as Nitrospira the largest The first member of this phylum Nitrospira marina was discovered in 1985 2 The second member Nitrospira moscoviensis was discovered in 1995 3 4 Nitrospirota Scientific classification Domain Bacteria Phylum NitrospirotaGarrity amp Holt 2021 1 Classes amp Orders Leptospirillia Leptospirillales Nitrospiria Nitrospirales Troglogloeales Thermodesulfovibrionia Thermodesulfovibrionales Synonyms Nitrospirae Garrity and Holt 2001 Nitrospiraeota Oren et al 2015 Nitrospirota Whitman et al 2018 Nitrospirota contains nitrifying taxa which oxidize nitrite to nitrate nitrite oxidizing bacteria NOB 5 and commamox bacteria Nitrospira inopinata discovered in 2015 6 7 and cultivated in 2017 8 Contents 1 Phylogeny 2 Taxonomy 3 See also 4 References 5 Further reading 6 External linksPhylogeny edit16S rRNA based LTP 08 2023 9 10 11 120 single copy marker proteins based GTDB 08 RS214 12 13 14 Nitrospirota Leptospirillia Leptospirillaceae L ferriphilum L ferrooxidans Leptospirillum Leptospirillales Thermodesulfovibrionia Dissulfurispiraceae Dissulfurispira thermophila Thermodesulfovibrionaceae T hydrogeniphilus T aggregans T thiophilus T islandicus T yellowstonii Thermodesulfovibrio Thermodesulfovibrionales Leptospirillaeota Leptospirillales Leptospirillum L ferrooxidans L rubarum L ferriphilum Leptospirillaceae Leptospirillia Nitrospirota Thermodesulfovibrionia Magnetobacteriaceae Ca Magnetobacterium casense Ca Magnetominusculus xianensis Sulfobiaceae Ca Sulfobium mesophilum Dissulfurispiraceae Dissulfurispira thermophila Thermodesulfovibrionaceae T thiophilus T aggregans T yellowstonii Thermodesulfovibrio Thermodesulfovibrionales Nitrospiria Troglogloeales Ca Manganitrophus noduliformans Manganitrophaceae Nitrospirales Nitrospira N defluvii N japonica N lenta N moscoviensis Ca N inopinata Ca N kreftii Ca N nitrosa Ca N nitrificans Nitrospiraceae Taxonomy editThe currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature LSPN 15 and the National Center for Biotechnology Information NCBI 4 Phylum Nitrospirota Garrity amp Holt 2021 Genus Candidatus Magnetocorallium Zhao et al 2023 Species Ca M paracelense Zhao et al 2023 Genus Candidatus Magnetomicrobium Zhang et al 2021 Species Ca M cryptolimnococcus Zhang et al 2021 Genus Candidatus Nitrobium Arshad et al 2017 Species Ca N versatile Arshad et al 2017 Genus Candidatus Thermomagnetovibrio Lefevre et al 2010 Species Ca T paiutensis Lefevre et al 2010 Class Leptospirillia Order Leptospirillales Family Leptospirillaceae Cavalier Smith 2020 Genus Leptospirillum Markosyan 1972 ex Hippe 2000 Species L ferrodiazotrophum Tyson et al 2005 Species L ferriphilum Coram amp Rawlings 2002 Species L ferrooxidans Markosyan 1972 ex Hippe 2000 Species L rubarum Aliaga Goltsman et al 2009 Species L thermoferrooxidans Hippe 2000 Class Nitrospiria Oren et al 2015 Order Nitrospirales Garrity amp Holt 2001 Family Nitrospiraceae Garrity amp Holt 2001 Genus Candidatus Nitronereus Mueller et al 2023 Species Ca N thalassa Mueller et al 2023 Genus Candidatus Porinitrospira Taylor et al 2022 Species Ca P cymbastela Taylor et al 2022 Genus Nitrospira Watson et al 1986 Species Ca N alkalitolerans Daebeler et al 2020 Species Ca N bockiana Lebedeva et al 2008 Species N calida Lebedeva et al 2011 Species N defluvii Nowka et al 2015 Species Ca N inopinata Daims et al 2015 Species N japonica Ushiki et al 2013 Species Ca N kreftii Sakoula et al 2021 Species N lenta Nowka et al 2015 Species N marina Watson et al 1986 type sp Species N moscoviensis Ehrich et al 1995 Species Ca N nitrificans van Kessel et al 2015 Species Ca N nitrosa van Kessel et al 2015 Species Ca N salsa Haaijer et al 2013 Order Troglogloeales Yu et al 2022 Genus Candidatus Troglogloea corrig Kostanjsek et al 2013 Species Ca T absolonii corrig Kostanjsek et al 2013 Family Manganitrophaceae Yu et al 2022 Genus Candidatus Manganitrophus Yu amp Leadbetter 2020 Species Ca M morganii Yu et al 2022 Species Ca M noduliformans Yu amp Leadbetter 2020 Class Thermodesulfovibrionia Umezawa et al 2021 Order Mariimomonadales Yoon et al 2023 Family Mariimomonadaceae Yoon et al 2023 Genus Ca Mariimomonas Yoon et al 2023 Species Ca M ferrooxydans Yoon et al 2023 Order Thermodesulfovibrionales Umezawa et al 2021 Family Dissulfurispiraceae Umezawa et al 2021 Genus Dissulfurispira Umezawa et al 2021 Species D thermophila Umezawa et al 2021 Family Thermodesulfovibrionaceae Umezawa et al 2021 Genus Candidatus Magnetobacterium Spring et al 1993 Species Ca M bavaricum Spring et al 1993 Species Ca M casense corrig Lin et al 2014 Genus Candidatus Magnetominusculus Lin et al 2017 Species Ca M xianensis Lin et al 2017 Genus Candidatus Magnetovum corrig Lefevre et al 2011 Species Ca M chiemensis Kolinko 2014 Species Ca M mohavensis Lefevre et al 2011 Genus Candidatus Sulfobium Zecchin et al 2018 Species Ca S mesophilum Zecchin et al 2018 Genus Thermodesulfovibrio Henry et al 1994 emend Sekiguchi et al 2008 Species T aggregans Sekiguchi et al 2008 Species T hydrogeniphilus Haouari et al 2009 Species T islandicus Sonne Hansen and Ahring 2000 Species T thiophilus Sekiguchi et al 2008 Species T yellowstonii Henry et al 1994 type sp See also editComammox Nitrate Nitrite Nitrogen cycle Nitrobacter Nitrobacteraceae Nitrosomonas Nitrospira List of bacterial orders List of bacteria generaReferences edit Oren A Garrity GM 2021 Valid publication of the names of forty two phyla of prokaryotes Int J Syst Evol Microbiol 71 10 5056 doi 10 1099 ijsem 0 005056 PMID 34694987 Watson SW Bock E Valois FW Waterbury JB Schlosser U 1986 Nitrospira marina gen nov sp nov a chemolithotrophic nitrite oxidizing bacterium Arch Microbiol 144 1 1 7 doi 10 1007 BF00454947 S2CID 29796511 Ehrich S Behrens D Lebedeva E Ludwig W Bock E July 1995 A new obligately chemolithoautotrophic nitrite oxidizing bacterium Nitrospira moscoviensis sp nov and its phylogenetic relationship Archives of Microbiology 164 1 16 23 doi 10 1007 BF02568729 PMID 7646315 S2CID 2702110 a b Sayers Nitrospirae National Center for Biotechnology Information NCBI taxonomy database Retrieved 2016 03 20 Daims H Nielsen JL Nielsen PH Schleifer KH Wagner M November 2001 In situ characterization of Nitrospira like nitrite oxidizing bacteria active in wastewater treatment plants Applied and Environmental Microbiology 67 11 5273 84 Bibcode 2001ApEnM 67 5273D doi 10 1128 AEM 67 11 5273 5284 2001 PMC 93301 PMID 11679356 Daims H Lebedeva EV Pjevac P Han P Herbold C Albertsen M et al December 2015 Complete nitrification by Nitrospira bacteria Nature 528 7583 504 9 Bibcode 2015Natur 528 504D doi 10 1038 nature16461 PMC 5152751 PMID 26610024 van Kessel MA Speth DR Albertsen M Nielsen PH Op den Camp HJ Kartal B et al December 2015 Complete nitrification by a single microorganism Nature 528 7583 555 9 Bibcode 2015Natur 528 555V doi 10 1038 nature16459 PMC 4878690 PMID 26610025 Kits KD Sedlacek CJ Lebedeva EV Han P Bulaev A Pjevac P et al September 2017 Kinetic analysis of a complete nitrifier reveals an oligotrophic lifestyle Nature 549 7671 269 272 Bibcode 2017Natur 549 269K doi 10 1038 nature23679 PMC 5600814 PMID 28847001 The LTP Retrieved 20 November 2023 LTP all tree in newick format Retrieved 20 November 2023 LTP 08 2023 Release Notes PDF Retrieved 20 November 2023 GTDB release 08 RS214 Genome Taxonomy Database Retrieved 10 May 2023 bac120 r214 sp label Genome Taxonomy Database Retrieved 10 May 2023 Taxon History Genome Taxonomy Database Retrieved 10 May 2023 Euzeby JP Nitrospirae List of Prokaryotic names with Standing in Nomenclature LPSN Retrieved 2016 03 20 Further reading editLefevre CT Frankel RB Abreu F Lins U Bazylinski DA February 2011 Culture independent characterization of a novel uncultivated magnetotactic member of the Nitrospirae phylum Environmental Microbiology 13 2 538 49 doi 10 1111 j 1462 2920 2010 02361 x PMID 20977572 External links edit Leptospirillum sp nbsp This bacteria related article is a stub You can help Wikipedia by expanding it vte Retrieved from https en wikipedia org w index php title Nitrospirota amp oldid 1192099507, wikipedia, wiki, book, books, library,

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