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Inparanoid

Inparanoid is an algorithm that finds orthologous genes and paralogous genes that arose—most likely by duplication—after some speciation event. Such protein-coding genes are called in-paralogs, as opposed to out-paralogs (which arose prior to a species split).[1]

Inparanoid (with varying capitalization) may refer to a program that uses the INPARANOID algorithm, or to the derived database of orthologous clusters of genes.[2]

See also edit

References edit

  1. ^ Remm, Maido; Christian E.V. Storm; Erik L.L. Sonnhammer (2001). "Automatic clustering of orthologs and in-paralogs from pairwise species comparisons". Journal of Molecular Biology. 314 (5): 1041–1052. CiteSeerX 10.1.1.328.6724. doi:10.1006/jmbi.2000.5197. PMID 11743721.
  2. ^ O'Brien, K.P.; Remm, M.; Sonnhammer, E.L.L. (2005). "Inparanoid: a comprehensive database of eukaryotic orthologs". Nucleic Acids Research. 33 (Database Issue): D476–80. doi:10.1093/nar/gki107. PMC 540061. PMID 15608241.

External links edit

  • InParanoid


inparanoid, algorithm, that, finds, orthologous, genes, paralogous, genes, that, arose, most, likely, duplication, after, some, speciation, event, such, protein, coding, genes, called, paralogs, opposed, paralogs, which, arose, prior, species, split, with, var. Inparanoid is an algorithm that finds orthologous genes and paralogous genes that arose most likely by duplication after some speciation event Such protein coding genes are called in paralogs as opposed to out paralogs which arose prior to a species split 1 Inparanoid with varying capitalization may refer to a program that uses the INPARANOID algorithm or to the derived database of orthologous clusters of genes 2 See also editBLAST ProteomicsReferences edit Remm Maido Christian E V Storm Erik L L Sonnhammer 2001 Automatic clustering of orthologs and in paralogs from pairwise species comparisons Journal of Molecular Biology 314 5 1041 1052 CiteSeerX 10 1 1 328 6724 doi 10 1006 jmbi 2000 5197 PMID 11743721 O Brien K P Remm M Sonnhammer E L L 2005 Inparanoid a comprehensive database of eukaryotic orthologs Nucleic Acids Research 33 Database Issue D476 80 doi 10 1093 nar gki107 PMC 540061 PMID 15608241 External links editInParanoid nbsp nbsp This bioinformatics related article is a stub You can help Wikipedia by expanding it vte Retrieved from https en wikipedia org w index php title Inparanoid amp oldid 1189439851, wikipedia, wiki, book, books, library,

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