Syntelog: a special case of genehomology where sets of genes are derived from the same ancestral genomic region. This may arise from speciation events, or through whole or partial genome duplication events (e.g. polyploidy). This term is distinct from ortholog, paralog, in-paralog, out-paralog, and xenolog because it refers only to genes' evolutionary history evidenced by sequence similarity and relative genomic position.[1]
Comparison between two genomic regions of Arabidopsis thaliana derived from its most recent genome duplication event. Syntelogs are indicated by red lines connecting regions of sequence similarly (red boxes):
Sequence analysis and visualization of syntelogs performed by GEvo.[2] Regerate this analysis in CoGe's GEvo using this link. GEvo Sequences were compared using the BlastZ algorithm.
^Tang, Haibao; Bomhoff, Matthew D.; Briones, Evan; Zhang, Liangsheng; Schnable, James C.; Lyons, Eric (2015). "SynFind: Compiling Syntenic Regions across Any Set of Genomes on Demand". Genome Biology and Evolution. 7 (12): 3286–3298. doi:10.1093/gbe/evv219. ISSN 1759-6653. PMC4700967. PMID 26560340.
^Lyons, Eric; Pedersen, Brent; Kane, Josh; Freeling, Michael (2008). "The Value of Nonmodel Genomes and an Example Using SynMap within CoGe to Dissect the Hexaploidy that Predates the Rosids". Tropical Plant Biology. 1 (3–4): 181–190. doi:10.1007/s12042-008-9017-y.
syntelog, special, case, gene, homology, where, sets, genes, derived, from, same, ancestral, genomic, region, this, arise, from, speciation, events, through, whole, partial, genome, duplication, events, polyploidy, this, term, distinct, from, ortholog, paralog. Syntelog a special case of gene homology where sets of genes are derived from the same ancestral genomic region This may arise from speciation events or through whole or partial genome duplication events e g polyploidy This term is distinct from ortholog paralog in paralog out paralog and xenolog because it refers only to genes evolutionary history evidenced by sequence similarity and relative genomic position 1 Contents 1 Example 2 See also 3 References 4 External linksExample editComparison between two genomic regions of Arabidopsis thaliana derived from its most recent genome duplication event Syntelogs are indicated by red lines connecting regions of sequence similarly red boxes nbsp Sequence analysis and visualization of syntelogs performed by GEvo 2 Regerate this analysis in CoGe s GEvo using this link GEvo Sequences were compared using the BlastZ algorithm See also editSynteny Homology biology Polyploidy Comparative genomicsReferences edit Tang Haibao Bomhoff Matthew D Briones Evan Zhang Liangsheng Schnable James C Lyons Eric 2015 SynFind Compiling Syntenic Regions across Any Set of Genomes on Demand Genome Biology and Evolution 7 12 3286 3298 doi 10 1093 gbe evv219 ISSN 1759 6653 PMC 4700967 PMID 26560340 Lyons Eric Pedersen Brent Kane Josh Freeling Michael 2008 The Value of Nonmodel Genomes and an Example Using SynMap within CoGe to Dissect the Hexaploidy that Predates the Rosids Tropical Plant Biology 1 3 4 181 190 doi 10 1007 s12042 008 9017 y External links edit 1 Retrieved from https en wikipedia org w index php title Syntelog amp oldid 1223717931, wikipedia, wiki, book, books, library,
