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SILVA ribosomal RNA database

SILVA is a ribosomal RNA database[1][2][3] established in collaboration between the Microbial Genomics Group at the Max Planck Institute for Marine Microbiology in Bremen, Germany, the Department of Microbiology at the Technical University Munich, and Ribocon.[4][5]

Release 117 of the database (January 2014) held more than 4,000,000 small subunit (SSU - 16S/18S) and 400,000 large subunit (LSU - 23S/28S) sequences.[6][failed verification] Sequences are provided as files for the ARB software environment.[4]

See also edit

References edit

  1. ^ Christian Quast, Elmar Pruesse, Pelin Yilmaz, Jan Gerken, Timmy Schweer, Pablo Yarza, Jörg Peplies, Frank Oliver Glöckner (2013). . Nucleic Acids Research 41 (D1): D590-D596. doi:10.1093/nar/gks1219[third-party source needed]
  2. ^ Pelin Yilmaz; Laura Wegener Parfrey; Pablo Yarza; Jan Gerken; Elmar Pruesse; Christian Quast; Timmy Schweer; Jörg Peplies; Wolfgang Ludwig; Frank Oliver Glöckner (2014). "The SILVA and "All-species Living Tree Project (LTP)" taxonomic frameworks". Nucleic Acids Research. 42 (D1): D643–D648. doi:10.1093/nar/gkt1209. PMC 3965112. PMID 24293649.
  3. ^ Elmar Pruesse, Christian Quast, Katrin Knittel, Bernhard M. Fuchs, Wolfgang Ludwig, Jörg Peplies, Frank Oliver Glöckner (2007). SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Research 35 (21): 7188-7196. doi:10.1093/nar/gkm864[third-party source needed]
  4. ^ a b Silva. Ribocon GmbH. Accessed November 2016.
  5. ^ Environmental Bioinformatics. Microbial Genomics and Bioinformatics Group, Max Planck Institute for Marine Microbiology. Accessed November 2016.[third-party source needed]
  6. ^ Marc P. Hoeppner, Lars E. Barquist, Paul P. Gardner (2014). An Introduction to RNA Databases. Methods in Molecular Biology 1097: 107–123. doi:10.1007/978-1-62703-709-9_6.

External links edit

  • SILVA rRNA database project

silva, ribosomal, database, this, article, multiple, issues, please, help, improve, discuss, these, issues, talk, page, learn, when, remove, these, template, messages, topic, this, article, meet, wikipedia, notability, guidelines, companies, organizations, ple. This article has multiple issues Please help improve it or discuss these issues on the talk page Learn how and when to remove these template messages The topic of this article may not meet Wikipedia s notability guidelines for companies and organizations Please help to demonstrate the notability of the topic by citing reliable secondary sources that are independent of the topic and provide significant coverage of it beyond a mere trivial mention If notability cannot be shown the article is likely to be merged redirected or deleted Find sources SILVA ribosomal RNA database news newspapers books scholar JSTOR November 2016 Learn how and when to remove this template message This article may rely excessively on sources too closely associated with the subject potentially preventing the article from being verifiable and neutral Please help improve it by replacing them with more appropriate citations to reliable independent third party sources November 2016 Learn how and when to remove this template message Learn how and when to remove this template message SILVA is a ribosomal RNA database 1 2 3 established in collaboration between the Microbial Genomics Group at the Max Planck Institute for Marine Microbiology in Bremen Germany the Department of Microbiology at the Technical University Munich and Ribocon 4 5 Release 117 of the database January 2014 held more than 4 000 000 small subunit SSU 16S 18S and 400 000 large subunit LSU 23S 28S sequences 6 failed verification Sequences are provided as files for the ARB software environment 4 See also editList of biological databases RNA databasesReferences edit Christian Quast Elmar Pruesse Pelin Yilmaz Jan Gerken Timmy Schweer Pablo Yarza Jorg Peplies Frank Oliver Glockner 2013 The SILVA ribosomal RNA gene database project improved data processing and web based tools Nucleic Acids Research 41 D1 D590 D596 doi 10 1093 nar gks1219 third party source needed Pelin Yilmaz Laura Wegener Parfrey Pablo Yarza Jan Gerken Elmar Pruesse Christian Quast Timmy Schweer Jorg Peplies Wolfgang Ludwig Frank Oliver Glockner 2014 The SILVA and All species Living Tree Project LTP taxonomic frameworks Nucleic Acids Research 42 D1 D643 D648 doi 10 1093 nar gkt1209 PMC 3965112 PMID 24293649 Elmar Pruesse Christian Quast Katrin Knittel Bernhard M Fuchs Wolfgang Ludwig Jorg Peplies Frank Oliver Glockner 2007 SILVA a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB Nucleic Acids Research 35 21 7188 7196 doi 10 1093 nar gkm864 third party source needed a b Silva Ribocon GmbH Accessed November 2016 Environmental Bioinformatics Microbial Genomics and Bioinformatics Group Max Planck Institute for Marine Microbiology Accessed November 2016 third party source needed Marc P Hoeppner Lars E Barquist Paul P Gardner 2014 An Introduction to RNA Databases Methods in Molecular Biology 1097 107 123 doi 10 1007 978 1 62703 709 9 6 External links editSILVA rRNA database project Retrieved from https en wikipedia org w index php title SILVA ribosomal RNA database amp oldid 1176496471, wikipedia, wiki, book, books, library,

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