Parhyale hawaiensis is an amphipodcrustacean species that is used in developmental and genetic analyses. It is categorized as an emerging model organism as the main biological techniques necessary for the study of an organism have been established.
P. hawaiensis is a detritovore that has a circumtropical, worldwide, intertidal, and shallow-water marine distribution,[1][2] and it may occur as a species complex.[3] It has been reported to occur in large populations (more than 3,000 per square metre) on decaying mangrove leaf material in environments subjected to rapid changes in salinity.[4] The ability to tolerate rapid temperature and osmotic changes allows this species to thrive under typical laboratory conditions. It is a robust species and is being considered for aquaculture.[5]
Life cycleedit
Life cycle of P. hawaiensis that takes about two months at 26 °C.[6]
Females produce embryos every 2 weeks once they reach sexual maturity. Embryogenesis is relatively short, lasting about 10 days at 26 °C (79 °F). Females normally brood the embryos in a ventralbrood pouch. Close examination of the embryonic development of P. hawaiensis has produced the most detailed staging system for any crustacean.[7] Complete embryogenesis has been divided into 30 discrete stages, which are readily identifiable in living animals or by means of common molecular markers in fixed specimens. Hatchlings possess a complete complement of segments and appendages which are morphologically similar to those of adult animals.
Genetic researchedit
P. hawaiensis is used in genetic research because eggs and embryos are easily manipulated. Embryos can be rapidly and easily removed from the brood pouch and maintained in seawater. Eggs can be collected and hatched individually, and the mature animals can subsequently be used in pairwise sister-brother or mother-son matings to generate inbred lines.
Fertilized eggs are sufficiently large to perform microinjections[8] and blastomere isolations[9] with relative ease. Developing P. hawaiensis embryos are clear, allowing for both detailed microscopic analyses in situ and the use of fluorescently tagged tracer molecules in live embryos. Early cleavage is holoblastic (total), allowing the fates of individual early cells to be explored through experimental manipulation.[7][8][9]
A transcriptome of P. hawaiensis was initially generated using the pyrosequencing technique.[10] This resource is freely available for download. Subsequent, more complete transcriptomes were generated using Illumina sequencing. The transcriptome data can be used for the creation of in situ probes and other experimental tools. The genome is available from NCBI
The genome of P. hawaiensis is available and was sequenced using Illumina short read sequencing.[11] This first version (V3.0) of the genome was recently superseded by a more contiguous version generated by Chicago sequencing through the Dovetail platform. The new version Phaw_5.0 is available on NCBI.
^Alan A. Myers (1985). "Shallow-water, coral reef and mangrove Amphipoda (Gammaridea) of Fiji" (PDF). Records of the Australian Museum. Suppl 5: 1–143.
^S. Poovachiranon, K. Boto & N. Duke (1986). "Food preference studies and ingestion rate measurements of the mangrove amphipod Parhyale hawaiensis (Dana)". Journal of Experimental Marine Biology and Ecology. 98 (1–2): 129–140. doi:10.1016/0022-0981(86)90078-X.
^Vargas-Abúndez, Jorge Arturo; López-Vázquez, Humberto Ivan; Mascaró, Maite; Martínez-Moreno, Gemma Leticia; Simões, Nuno (2021-02-10). "Marine amphipods as a new live prey for ornamental aquaculture: exploring the potential of Parhyale hawaiensis and Elasmopus pectenicrus". PeerJ. 9: e10840. doi:10.7717/peerj.10840. ISSN 2167-8359. PMC7881717. PMID 33614288.
^Kao D, Lai AG, Stamataki E, Rosic S, Konstantinides N, Jarvis E, et al. (2016). "The genome of the crustacean Parhyale hawaiensis, a model for animal development, regeneration, immunity and lignocellulose digestion". eLife. 5. doi:10.7554/eLife.20062. PMC5111886. PMID 27849518.
^ abWilliam E. Browne; Alivia L. Price; Matthias Gerberding; Nipam H. Patel (2005). "Stages of embryonic development in the amphipod crustacean, Parhyale hawaiensis" (PDF). Genesis. 42 (3): 124–149. doi:10.1002/gene.20145. PMID 15986449. S2CID 18213916.
^ abMatthias Gerberding, William E. Browne & Nipam H. Patel (2002). "Cell lineage analysis of the amphipod crustacean Parhyale hawaiensis". Development. 129 (24): 5789–5901. doi:10.1242/dev.00155. PMID 12421717.
^ abCassandra G. Extavour (2005). "The fate of isolated blastomeres with respect to germ cell formation in the amphipod crustacean Parhyale hawaiensis". Developmental Biology. 277 (2): 387–402. doi:10.1016/j.ydbio.2004.09.030. PMID 15617682.
^Victor Zeng; Karina Villanueva; Ben Ewen-Campen; Frederike Alwes; William Browne; Cassandra Extavour (2011). "De novo assembly and characterization of a maternal and developmental transcriptome for the emerging model crustacean Parhyale hawaiensis" (PDF). BMC Genomics. 12: 581. doi:10.1186/1471-2164-12-581. PMC3282834. PMID 22118449.
^Kao D, Lai AG, Stamataki E, Rosic S, Konstantinides N, Jarvis E; et al. (2016). "The genome of the crustacean Parhyale hawaiensis, a model for animal development, regeneration, immunity and lignocellulose digestion". eLife. 5. doi:10.7554/eLife.20062. PMC5111886. PMID 27849518.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Further readingedit
Wikimedia Commons has media related to Parhyale hawaiensis.
E. Jay Rehm; Roberta L. Hannibal; R. Crystal Chaw; Mario A. Vargas-Vila; Nipam H. Patel (2009). "The crustacean Parhyale hawaiensis: a new model for arthropod development". Cold Spring Harbor Protocols. 2009 (1): pdb.emo114. doi:10.1101/pdb.emo114. PMID 20147009.
May 01, 2024
parhyale, hawaiensis, amphipod, crustacean, species, that, used, developmental, genetic, analyses, categorized, emerging, model, organism, main, biological, techniques, necessary, study, organism, have, been, established, adult, male, feeding, slice, carrot, s. Parhyale hawaiensis is an amphipod crustacean species that is used in developmental and genetic analyses It is categorized as an emerging model organism as the main biological techniques necessary for the study of an organism have been established Parhyale hawaiensis Adult male Feeding on a slice of carrot Scientific classification Kingdom Animalia Phylum Arthropoda Subphylum Crustacea Class Malacostraca Order Amphipoda Family Hyalidae Genus Parhyale Species P hawaiensis Binomial name Parhyale hawaiensisDana 1853 Contents 1 Habitat 2 Life cycle 3 Genetic research 4 References 5 Further readingHabitat editP hawaiensis is a detritovore that has a circumtropical worldwide intertidal and shallow water marine distribution 1 2 and it may occur as a species complex 3 It has been reported to occur in large populations more than 3 000 per square metre on decaying mangrove leaf material in environments subjected to rapid changes in salinity 4 The ability to tolerate rapid temperature and osmotic changes allows this species to thrive under typical laboratory conditions It is a robust species and is being considered for aquaculture 5 Life cycle edit nbsp Life cycle of P hawaiensis that takes about two months at 26 C 6 Females produce embryos every 2 weeks once they reach sexual maturity Embryogenesis is relatively short lasting about 10 days at 26 C 79 F Females normally brood the embryos in a ventral brood pouch Close examination of the embryonic development of P hawaiensis has produced the most detailed staging system for any crustacean 7 Complete embryogenesis has been divided into 30 discrete stages which are readily identifiable in living animals or by means of common molecular markers in fixed specimens Hatchlings possess a complete complement of segments and appendages which are morphologically similar to those of adult animals Genetic research editP hawaiensis is used in genetic research because eggs and embryos are easily manipulated Embryos can be rapidly and easily removed from the brood pouch and maintained in seawater Eggs can be collected and hatched individually and the mature animals can subsequently be used in pairwise sister brother or mother son matings to generate inbred lines Fertilized eggs are sufficiently large to perform microinjections 8 and blastomere isolations 9 with relative ease Developing P hawaiensis embryos are clear allowing for both detailed microscopic analyses in situ and the use of fluorescently tagged tracer molecules in live embryos Early cleavage is holoblastic total allowing the fates of individual early cells to be explored through experimental manipulation 7 8 9 A transcriptome of P hawaiensis was initially generated using the pyrosequencing technique 10 This resource is freely available for download Subsequent more complete transcriptomes were generated using Illumina sequencing The transcriptome data can be used for the creation of in situ probes and other experimental tools The genome is available from NCBIThe genome of P hawaiensis is available and was sequenced using Illumina short read sequencing 11 This first version V3 0 of the genome was recently superseded by a more contiguous version generated by Chicago sequencing through the Dovetail platform The new version Phaw 5 0 is available on NCBI References edit Clarence Raymond Shoemaker 1956 Observations on the amphipod genus Parhyale Proceedings of the United States National Museum 106 3372 345 358 doi 10 5479 si 00963801 106 3372 345 J L Barnard 1965 Marine Amphipoda of atolls in Micronesia Proceedings of the United States National Museum 117 3516 459 551 doi 10 5479 si 00963801 117 3516 459 Alan A Myers 1985 Shallow water coral reef and mangrove Amphipoda Gammaridea of Fiji PDF Records of the Australian Museum Suppl 5 1 143 S Poovachiranon K Boto amp N Duke 1986 Food preference studies and ingestion rate measurements of the mangrove amphipod Parhyale hawaiensis Dana Journal of Experimental Marine Biology and Ecology 98 1 2 129 140 doi 10 1016 0022 0981 86 90078 X Vargas Abundez Jorge Arturo Lopez Vazquez Humberto Ivan Mascaro Maite Martinez Moreno Gemma Leticia Simoes Nuno 2021 02 10 Marine amphipods as a new live prey for ornamental aquaculture exploring the potential of Parhyale hawaiensis and Elasmopus pectenicrus PeerJ 9 e10840 doi 10 7717 peerj 10840 ISSN 2167 8359 PMC 7881717 PMID 33614288 Kao D Lai AG Stamataki E Rosic S Konstantinides N Jarvis E et al 2016 The genome of the crustacean Parhyale hawaiensis a model for animal development regeneration immunity and lignocellulose digestion eLife 5 doi 10 7554 eLife 20062 PMC 5111886 PMID 27849518 a b William E Browne Alivia L Price Matthias Gerberding Nipam H Patel 2005 Stages of embryonic development in the amphipod crustacean Parhyale hawaiensis PDF Genesis 42 3 124 149 doi 10 1002 gene 20145 PMID 15986449 S2CID 18213916 a b Matthias Gerberding William E Browne amp Nipam H Patel 2002 Cell lineage analysis of the amphipod crustacean Parhyale hawaiensis Development 129 24 5789 5901 doi 10 1242 dev 00155 PMID 12421717 a b Cassandra G Extavour 2005 The fate of isolated blastomeres with respect to germ cell formation in the amphipod crustacean Parhyale hawaiensis Developmental Biology 277 2 387 402 doi 10 1016 j ydbio 2004 09 030 PMID 15617682 Victor Zeng Karina Villanueva Ben Ewen Campen Frederike Alwes William Browne Cassandra Extavour 2011 De novo assembly and characterization of a maternal and developmental transcriptome for the emerging model crustacean Parhyale hawaiensis PDF BMC Genomics 12 581 doi 10 1186 1471 2164 12 581 PMC 3282834 PMID 22118449 Kao D Lai AG Stamataki E Rosic S Konstantinides N Jarvis E et al 2016 The genome of the crustacean Parhyale hawaiensis a model for animal development regeneration immunity and lignocellulose digestion eLife 5 doi 10 7554 eLife 20062 PMC 5111886 PMID 27849518 a href Template Cite journal html title Template Cite journal cite journal a CS1 maint multiple names authors list link Further reading edit nbsp Wikimedia Commons has media related to Parhyale hawaiensis E Jay Rehm Roberta L Hannibal R Crystal Chaw Mario A Vargas Vila Nipam H Patel 2009 The crustacean Parhyale hawaiensis a new model for arthropod development Cold Spring Harbor Protocols 2009 1 pdb emo114 doi 10 1101 pdb emo114 PMID 20147009 Retrieved from https en wikipedia org w index php title Parhyale hawaiensis amp oldid 1192900027, wikipedia, wiki, book, books, library,
