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Hill equation (biochemistry)

In biochemistry and pharmacology, the Hill equation refers to two closely related equations that reflect the binding of ligands to macromolecules, as a function of the ligand concentration. A ligand is "a substance that forms a complex with a biomolecule to serve a biological purpose" (ligand definition), and a macromolecule is a very large molecule, such as a protein, with a complex structure of components (macromolecule definition). Protein-ligand binding typically changes the structure of the target protein, thereby changing its function in a cell.

Binding curves showing the characteristically sigmoidal curves generated by using the Hill–Langmuir equation to model cooperative binding. Each curve corresponds to a different Hill coefficient, labeled to the curve's right. The vertical axis displays the proportion of the total number of receptors that have been bound by a ligand. The horizontal axis is the concentration of the ligand. As the Hill coefficient is increased, the saturation curve becomes steeper.

The distinction between the two Hill equations is whether they measure occupancy or response. The Hill–Langmuir equation reflects the occupancy of macromolecules: the fraction that is saturated or bound by the ligand.[1][2][nb 1] This equation is formally equivalent to the Langmuir isotherm.[3] Conversely, the Hill equation proper reflects the cellular or tissue response to the ligand: the physiological output of the system, such as muscle contraction.

The Hill–Langmuir equation was originally formulated by Archibald Hill in 1910 to describe the sigmoidal O2 binding curve of haemoglobin.[4]

The binding of a ligand to a macromolecule is often enhanced if there are already other ligands present on the same macromolecule (this is known as cooperative binding). The Hill–Langmuir equation is useful for determining the degree of cooperativity of the ligand(s) binding to the enzyme or receptor. The Hill coefficient provides a way to quantify the degree of interaction between ligand binding sites.[5]

The Hill equation (for response) is important in the construction of dose-response curves.

Proportion of ligand-bound receptors

 
Plot of the % saturation of oxygen binding to hemaoglobin, as a function of the amount of oxygen present (expressed as an oxygen pressure). Data (red circles) and Hill equation fit (black curve) from original 1910 paper of Hill.[6]

The Hill–Langmuir equation is a special case of a rectangular hyperbola and is commonly expressed in the following ways.[2][7][8]

 ,

where:

  •   is the fraction of the receptor protein concentration that is bound by the ligand,
  •  is the total ligand concentration,
  •   is the apparent dissociation constant derived from the law of mass action,
  •  is the ligand concentration producing half occupation,
  •   is the Hill coefficient.

The special case where   is a Monod equation.

Constants

In pharmacology,   is often written as  , where   is the ligand, equivalent to L, and   is the receptor.   can be expressed in terms of the total amount of receptor and ligand-bound receptor concentrations:  .   is equal to the ratio of the dissociation rate of the ligand-receptor complex to its association rate ( ).[8] Kd is the equilibrium constant for dissociation.   is defined so that  , this is also known as the microscopic dissociation constant and is the ligand concentration occupying half of the binding sites. In recent literature, this constant is sometimes referred to as  .[8]

Gaddum equation

The Gaddum equation is a further generalisation of the Hill-equation, incorporating the presence of a reversible competitive antagonist.[1] The Gaddum equation is derived similarly to the Hill-equation but with 2 equilibria: both the ligand with the receptor and the antagonist with the receptor. Hence, the Gaddum equation has 2 constants: the equilibrium constants of the ligand and that of the antagonist

Hill plot

 
A Hill plot, where the x-axis is the logarithm of the ligand concentration and the y-axis is the transformed receptor occupancy. X represents L and Y represents theta.

The Hill plot is the rearrangement of the Hill–Langmuir Equation into a straight line.

Taking the reciprocal of both sides of the Hill–Langmuir equation, rearranging, and inverting again yields:  . Taking the logarithm of both sides of the equation leads to an alternative formulation of the Hill-Langmuir equation:

 .

This last form of the Hill–Langmuir equation is advantageous because a plot of   versus   yields a linear plot, which is called a Hill plot.[7][8] Because the slope of a Hill plot is equal to the Hill coefficient for the biochemical interaction, the slope is denoted by  . A slope greater than one thus indicates positively cooperative binding between the receptor and the ligand, while a slope less than one indicates negatively cooperative binding.

Transformations of equations into linear forms such as this were very useful before the widespread use of computers, as they allowed researchers to determine parameters by fitting lines to data. However, these transformations affect error propagation, and this may result in undue weight to error in data points near 0 or 1.[nb 2] This impacts the parameters of linear regression lines fitted to the data. Furthermore, the use of computers enables more robust analysis involving nonlinear regression.

Tissue response

 
A trio of dose response curves

A distinction should be made between quantification of drugs binding to receptors and drugs producing responses. There may not necessarily be a linear relationship between the two values. In contrast to this article's previous definition of the Hill-Langmuir equation, the IUPHAR defines the Hill equation in terms of the tissue response  , as[1]

 
where   is the drug concentration and   is the drug concentration that produces a 50% maximal response. Dissociation constants (in the previous section) relate to ligand binding, while   reflects tissue response.

This form of the equation can reflect tissue/cell/population responses to drugs and can be used to generate dose response curves. The relationship between   and EC50 may be quite complex as a biological response will be the sum of myriad factors; a drug will have a different biological effect if more receptors are present, regardless of its affinity.

The Del-Castillo Katz model is used to relate the Hill–Langmuir equation to receptor activation by including a second equilibrium of the ligand-bound receptor to an activated form of the ligand-bound receptor.

Statistical analysis of response as a function of stimulus may be performed by regression methods such as the probit model or logit model, or other methods such as the Spearman–Karber method.[9] Empirical models based on nonlinear regression are usually preferred over the use of some transformation of the data that linearizes the dose-response relationship.[10]

Hill coefficient

The Hill coefficient is a measure of ultrasensitivity (i.e. how steep is the response curve).

The Hill coefficient,   or  , may describe cooperativity (or possibly other biochemical properties, depending on the context in which the Hill–Langmuir equation is being used). When appropriate,[clarification needed] the value of the Hill coefficient describes the cooperativity of ligand binding in the following way:

  •  . Positively cooperative binding: Once one ligand molecule is bound to the enzyme, its affinity for other ligand molecules increases. For example, the Hill coefficient of oxygen binding to haemoglobin (an example of positive cooperativity) falls within the range of 1.7–3.2.[5]
  •  . Negatively cooperative binding: Once one ligand molecule is bound to the enzyme, its affinity for other ligand molecules decreases.
  •  . Noncooperative (completely independent) binding: The affinity of the enzyme for a ligand molecule is not dependent on whether or not other ligand molecules are already bound. When n=1, we obtain a model that can be modeled by Michaelis–Menten kinetics,[11] in which  , the Michaelis–Menten constant.

The Hill coefficient can be calculated in terms of potency as:

 .[12]

where   and   are the input values needed to produce the 10% and 90% of the maximal response, respectively.[13]

Derivation from mass action kinetics

The Hill-Langmuir equation is derived similarly to the Michaelis Menten equation[14][15] but incorporates the Hill coefficient. Consider a protein ( ), such as haemoglobin or a protein receptor, with   binding sites for ligands ( ). The binding of the ligands to the protein can be represented by the chemical equilibrium expression:

 

where   (forward rate, or the rate of association of the protein-ligand complex) and   (reverse rate, or the complex's rate of dissociation) are the reaction rate constants for the association of the ligands to the protein and their dissociation from the protein, respectively.[8] From the law of mass action, which in turn may be derived from the principles of collision theory, the apparent dissociation constant  , an equilibrium constant, is given by:

 

At the same time,  , the ratio of the concentration of occupied receptor to total receptor concentration, is given by:

 

By using the expression obtained earlier for the dissociation constant, we can replace   with   to yield a simplified expression for  :

 

which is a common formulation of the Hill equation.[7][16][8]

Assuming that the protein receptor was initially completely free (unbound) at a concentration  , then at any time,   and  . Consequently, the Hill–Langmuir Equation is also commonly written as an expression for the concentration  of bound protein:

 [2]

All of these formulations assume that the protein has   sites to which ligands can bind. In practice, however, the Hill Coefficient   rarely provides an accurate approximation of the number of ligand binding sites on a protein.[5][7] Consequently, it has been observed that the Hill coefficient should instead be interpreted as an "interaction coefficient" describing the cooperativity among ligand binding sites.[5]

Applications

The Hill and Hill–Langmuir equations are used extensively in pharmacology to quantify the functional parameters of a drug[citation needed] and are also used in other areas of biochemistry.

The Hill equation can be used to describe dose-response relationships, for example ion channel open-probability (P-open) vs. ligand concentration.[17]

Regulation of gene transcription

The Hill–Langmuir equation can be applied in modelling the rate at which a gene product is produced when its parent gene is being regulated by transcription factors (e.g., activators and/or repressors).[11] Doing so is appropriate when a gene is regulated by multiple binding sites for transcription factors, in which case the transcription factors may bind the DNA in a cooperative fashion.[18]

If the production of protein from gene X is up-regulated (activated) by a transcription factor Y, then the rate of production of protein X can be modeled as a differential equation in terms of the concentration of activated Y protein:

 ,

where k is the maximal transcription rate of gene X.

Likewise, if the production of protein from gene Y is down-regulated (repressed) by a transcription factor Z, then the rate of production of protein Y can be modeled as a differential equation in terms of the concentration of activated Z protein:

 ,

where k is the maximal transcription rate of gene Y.

Limitations

Because of its assumption that ligand molecules bind to a receptor simultaneously, the Hill–Langmuir equation has been criticized as a physically unrealistic model.[5] Moreover, the Hill coefficient should not be considered a reliable approximation of the number of cooperative ligand binding sites on a receptor[5][19] except when the binding of the first and subsequent ligands results in extreme positive cooperativity.[5]

Unlike more complex models, the relatively simple Hill–Langmuir equation provides little insight into underlying physiological mechanisms of protein-ligand interactions. This simplicity, however, is what makes the Hill–Langmuir equation a useful empirical model, since its use requires little a priori knowledge about the properties of either the protein or ligand being studied.[2] Nevertheless, other, more complex models of cooperative binding have been proposed.[7] For more information and examples of such models, see Cooperative binding.

Global sensitivity measure such as Hill coefficient do not characterise the local behaviours of the s-shaped curves. Instead, these features are well captured by the response coefficient measure.[20]

There is a link between Hill Coefficient and Response coefficient, as follows. Altszyler et al. (2017) have shown that these ultrasensitivity measures can be linked.[12]

See also

Notes

  1. ^ For clarity, this article will use the International Union of Basic and Clinical Pharmacology convention of distinguishing between the Hill-Langmuir equation (for receptor saturation) and Hill equation (for tissue response)
  2. ^ See Propagation of uncertainty. The function   propagates errors in   as  . Hence errors in values of   near   or   are given far more weight than those for  

References

  1. ^ a b c Neubig, Richard R. (2003). "International Union of Pharmacology Committee on Receptor Nomenclature and Drug Classification. XXXVIII. Update on Terms and Symbols in Quantitative Pharmacology" (PDF). Pharmacological Reviews. 55 (4): 597–606. doi:10.1124/pr.55.4.4. PMID 14657418. S2CID 1729572.
  2. ^ a b c d Gesztelyi, Rudolf; Zsuga, Judit; Kemeny-Beke, Adam; Varga, Balazs; Juhasz, Bela; Tosaki, Arpad (31 March 2012). "The Hill equation and the origin of quantitative pharmacology". Archive for History of Exact Sciences. 66 (4): 427–438. doi:10.1007/s00407-012-0098-5. ISSN 0003-9519. S2CID 122929930.
  3. ^ Langmuir, Irving (1918). "The adsorption of gases on plane surfaces of glass, mica and platinum". Journal of the American Chemical Society. 40 (9): 1361–1403. doi:10.1021/ja02242a004.
  4. ^ Hill, A. V. (1910-01-22). "The possible effects of the aggregation of the molecules of hemoglobin on its dissociation curves". J. Physiol. 40 (Suppl): iv–vii. doi:10.1113/jphysiol.1910.sp001386. S2CID 222195613.
  5. ^ a b c d e f g Weiss, J. N. (1 September 1997). "The Hill equation revisited: uses and misuses". The FASEB Journal. 11 (11): 835–841. doi:10.1096/fasebj.11.11.9285481. ISSN 0892-6638. PMID 9285481. S2CID 827335.
  6. ^ "Proceedings of the Physiological Society: January 22, 1910". The Journal of Physiology. 40 (suppl): i–vii. 1910. doi:10.1113/jphysiol.1910.sp001386. ISSN 1469-7793. S2CID 222195613.
  7. ^ a b c d e Stefan, Melanie I.; Novère, Nicolas Le (27 June 2013). "Cooperative Binding". PLOS Computational Biology. 9 (6): e1003106. Bibcode:2013PLSCB...9E3106S. doi:10.1371/journal.pcbi.1003106. ISSN 1553-7358. PMC 3699289. PMID 23843752.
  8. ^ a b c d e f Nelson, David L.; Cox, Michael M. (2013). Lehninger principles of biochemistry (6th ed.). New York: W.H. Freeman. pp. 158–162. ISBN 978-1429234146.
  9. ^ Hamilton, MA; Russo, RC; Thurston, RV (1977). "Trimmed Spearman–Karber method for estimating median lethal concentrations in toxicity bioassays". Environmental Science & Technology. 11 (7): 714–9. Bibcode:1977EnST...11..714H. doi:10.1021/es60130a004.
  10. ^ Bates, Douglas M.; Watts, Donald G. (1988). Nonlinear Regression Analysis and its Applications. Wiley. p. 365. ISBN 9780471816430.
  11. ^ a b Alon, Uri (2007). An Introduction to Systems Biology: Design Principles of Biological Circuits ([Nachdr.] ed.). Boca Raton, FL: Chapman & Hall. ISBN 978-1-58488-642-6.
  12. ^ a b Altszyler, E; Ventura, A. C.; Colman-Lerner, A.; Chernomoretz, A. (2017). "Ultrasensitivity in signaling cascades revisited: Linking local and global ultrasensitivity estimations". PLOS ONE. 12 (6): e0180083. arXiv:1608.08007. Bibcode:2017PLoSO..1280083A. doi:10.1371/journal.pone.0180083. PMC 5491127. PMID 28662096.
  13. ^ Srinivasan, Bharath (2021). "Explicit Treatment of Non‐Michaelis‐Menten and Atypical Kinetics in Early Drug Discovery*". ChemMedChem. 16 (6): 899–918. doi:10.1002/cmdc.202000791. PMID 33231926. S2CID 227157473.
  14. ^ Srinivasan, Bharath (2021-07-16). "A Guide to the Michaelis‐Menten equation: Steady state and beyond". The FEBS Journal. 289 (20): 6086–6098. doi:10.1111/febs.16124. ISSN 1742-464X. PMID 34270860.
  15. ^ Srinivasan, Bharath (2020-09-27). "Words of advice: teaching enzyme kinetics". The FEBS Journal. 288 (7): 2068–2083. doi:10.1111/febs.15537. ISSN 1742-464X. PMID 32981225.
  16. ^ Foreman, John (2003). Textbook of Receptor Pharmacology, Second Edition. p. 14. ISBN 9780849310294.
  17. ^ Ding, S; Sachs, F (1999). "Single Channel Properties of P2X2 Purinoceptors". J. Gen. Physiol. The Rockefeller University Press. 113 (5): 695–720. doi:10.1085/jgp.113.5.695. PMC 2222910. PMID 10228183.
  18. ^ Chu, Dominique; Zabet, Nicolae Radu; Mitavskiy, Boris (2009-04-07). "Models of transcription factor binding: Sensitivity of activation functions to model assumptions" (PDF). Journal of Theoretical Biology. 257 (3): 419–429. Bibcode:2009JThBi.257..419C. doi:10.1016/j.jtbi.2008.11.026. PMID 19121637.
  19. ^ Monod, Jacque; Wyman, Jeffries; Changeux, Jean-Pierre (1 May 1965). "On the nature of allosteric transitions: A plausible model". Journal of Molecular Biology. 12 (1): 88–118. doi:10.1016/S0022-2836(65)80285-6. PMID 14343300.
  20. ^ Kholodenko, Boris N.; et al. (1997). "Quantification of information transfer via cellular signal transduction pathways". FEBS Letters. 414 (2): 430–434. doi:10.1016/S0014-5793(97)01018-1. PMID 9315734. S2CID 19466336.

Further reading

  • Dorland's Illustrated Medical Dictionary
  • Coval, ML (December 1970). "Analysis of Hill interaction coefficients and the invalidity of the Kwon and Brown equation". J. Biol. Chem. 245 (23): 6335–6. doi:10.1016/S0021-9258(18)62614-6. PMID 5484812.
  • d'A Heck, Henry (1971). "Statistical theory of cooperative binding to proteins. Hill equation and the binding potential". J. Am. Chem. Soc. 93 (1): 23–29. doi:10.1021/ja00730a004. PMID 5538860.
  • Atkins, Gordon L. (1973). "A simple digital-computer program for estimating the parameter of the Hill Equation". Eur. J. Biochem. 33 (1): 175–180. doi:10.1111/j.1432-1033.1973.tb02667.x. PMID 4691349.
  • Endrenyi, Laszlo; Kwong, F. H. F.; Fajszi, Csaba (1975). "Evaluation of Hill slopes and Hill coefficients when the saturation binding or velocity is not known". Eur. J. Biochem. 51 (2): 317–328. doi:10.1111/j.1432-1033.1975.tb03931.x. PMID 1149734.
  • Voet, Donald; Voet, Judith G. (2004). Biochemistry.
  • Weiss, J. N. (1997). "The Hill equation revisited: uses and misuses". FASEB Journal. 11 (11): 835–841. doi:10.1096/fasebj.11.11.9285481. PMID 9285481. S2CID 827335.
  • Kurganov, B. I.; Lobanov, A. V. (2001). "Criterion for Hill equation validity for description of biosensor calibration curves". Anal. Chim. Acta. 427 (1): 11–19. doi:10.1016/S0003-2670(00)01167-3.
  • Goutelle, Sylvain; Maurin, Michel; Rougier, Florent; Barbaut, Xavier; Bourguignon, Laurent; Ducher, Michel; Maire, Pascal (2008). "The Hill equation: a review of its capabilities in pharmacological modelling". Fundamental & Clinical Pharmacology. 22 (6): 633–648. doi:10.1111/j.1472-8206.2008.00633.x. PMID 19049668. S2CID 4979109.
  • Gesztelyi R; Zsuga J; Kemeny-Beke A; Varga B; Juhasz B; Tosaki A (2012). "The Hill equation and the origin of quantitative pharmacology". Archive for History of Exact Sciences. 66 (4): 427–38. doi:10.1007/s00407-012-0098-5. S2CID 122929930.
  • Colquhoun D (2006). "The quantitative analysis of drug-receptor interactions: a short history". Trends Pharmacol Sci. 27 (3): 149–57. doi:10.1016/j.tips.2006.01.008. PMID 16483674.
  • Rang HP (2006). "The receptor concept: pharmacology's big idea". Br J Pharmacol. 147 (Suppl 1): S9–16. doi:10.1038/sj.bjp.0706457. PMC 1760743. PMID 16402126.

External links

  • Hill equation calculator

hill, equation, biochemistry, this, article, about, hill, equation, equation, used, biochemical, characterization, other, uses, hill, differential, equation, biochemistry, pharmacology, hill, equation, refers, closely, related, equations, that, reflect, bindin. This article is about the Hill equation as an equation used in biochemical characterization For other uses see Hill differential equation In biochemistry and pharmacology the Hill equation refers to two closely related equations that reflect the binding of ligands to macromolecules as a function of the ligand concentration A ligand is a substance that forms a complex with a biomolecule to serve a biological purpose ligand definition and a macromolecule is a very large molecule such as a protein with a complex structure of components macromolecule definition Protein ligand binding typically changes the structure of the target protein thereby changing its function in a cell Binding curves showing the characteristically sigmoidal curves generated by using the Hill Langmuir equation to model cooperative binding Each curve corresponds to a different Hill coefficient labeled to the curve s right The vertical axis displays the proportion of the total number of receptors that have been bound by a ligand The horizontal axis is the concentration of the ligand As the Hill coefficient is increased the saturation curve becomes steeper The distinction between the two Hill equations is whether they measure occupancy or response The Hill Langmuir equation reflects the occupancy of macromolecules the fraction that is saturated or bound by the ligand 1 2 nb 1 This equation is formally equivalent to the Langmuir isotherm 3 Conversely the Hill equation proper reflects the cellular or tissue response to the ligand the physiological output of the system such as muscle contraction The Hill Langmuir equation was originally formulated by Archibald Hill in 1910 to describe the sigmoidal O2 binding curve of haemoglobin 4 The binding of a ligand to a macromolecule is often enhanced if there are already other ligands present on the same macromolecule this is known as cooperative binding The Hill Langmuir equation is useful for determining the degree of cooperativity of the ligand s binding to the enzyme or receptor The Hill coefficient provides a way to quantify the degree of interaction between ligand binding sites 5 The Hill equation for response is important in the construction of dose response curves Contents 1 Proportion of ligand bound receptors 1 1 Constants 1 2 Gaddum equation 1 3 Hill plot 2 Tissue response 3 Hill coefficient 4 Derivation from mass action kinetics 5 Applications 5 1 Regulation of gene transcription 6 Limitations 7 See also 8 Notes 9 References 10 Further reading 11 External linksProportion of ligand bound receptors Edit Plot of the saturation of oxygen binding to hemaoglobin as a function of the amount of oxygen present expressed as an oxygen pressure Data red circles and Hill equation fit black curve from original 1910 paper of Hill 6 The Hill Langmuir equation is a special case of a rectangular hyperbola and is commonly expressed in the following ways 2 7 8 8 L n K d L n L n K A n L n 1 1 K A L n displaystyle begin aligned theta amp ce L n over K d ce L n amp ce L n over K A n ce L n amp 1 over 1 left K A over ce L right n end aligned where 8 displaystyle theta is the fraction of the receptor protein concentration that is bound by the ligand L displaystyle ce L is the total ligand concentration K d displaystyle K d is the apparent dissociation constant derived from the law of mass action K A displaystyle K A is the ligand concentration producing half occupation n displaystyle n is the Hill coefficient The special case where n 1 displaystyle n 1 is a Monod equation Constants Edit In pharmacology 8 displaystyle theta is often written as p AR displaystyle p ce AR where A displaystyle ce A is the ligand equivalent to L and R displaystyle ce R is the receptor 8 displaystyle theta can be expressed in terms of the total amount of receptor and ligand bound receptor concentrations 8 LR R total displaystyle theta frac ce LR ce R rm total K d displaystyle K d is equal to the ratio of the dissociation rate of the ligand receptor complex to its association rate K d k d k a textstyle K rm d k rm d over k rm a 8 Kd is the equilibrium constant for dissociation K A textstyle K A is defined so that K A n K d k d k a textstyle K A n K rm d k rm d over k rm a this is also known as the microscopic dissociation constant and is the ligand concentration occupying half of the binding sites In recent literature this constant is sometimes referred to as K D textstyle K D 8 Gaddum equation Edit The Gaddum equation is a further generalisation of the Hill equation incorporating the presence of a reversible competitive antagonist 1 The Gaddum equation is derived similarly to the Hill equation but with 2 equilibria both the ligand with the receptor and the antagonist with the receptor Hence the Gaddum equation has 2 constants the equilibrium constants of the ligand and that of the antagonist Hill plot Edit A Hill plot where the x axis is the logarithm of the ligand concentration and the y axis is the transformed receptor occupancy X represents L and Y represents theta The Hill plot is the rearrangement of the Hill Langmuir Equation into a straight line Taking the reciprocal of both sides of the Hill Langmuir equation rearranging and inverting again yields 8 1 8 L n K d L n K A n displaystyle theta over 1 theta ce L n over K d ce L n over K A n Taking the logarithm of both sides of the equation leads to an alternative formulation of the Hill Langmuir equation log 8 1 8 n log L log K d n log L n log K A displaystyle begin aligned log left theta over 1 theta right amp n log ce L log K d amp n log ce L n log K A end aligned This last form of the Hill Langmuir equation is advantageous because a plot of log 8 1 8 textstyle log left theta over 1 theta right versus log L displaystyle log ce L yields a linear plot which is called a Hill plot 7 8 Because the slope of a Hill plot is equal to the Hill coefficient for the biochemical interaction the slope is denoted by n H displaystyle n H A slope greater than one thus indicates positively cooperative binding between the receptor and the ligand while a slope less than one indicates negatively cooperative binding Transformations of equations into linear forms such as this were very useful before the widespread use of computers as they allowed researchers to determine parameters by fitting lines to data However these transformations affect error propagation and this may result in undue weight to error in data points near 0 or 1 nb 2 This impacts the parameters of linear regression lines fitted to the data Furthermore the use of computers enables more robust analysis involving nonlinear regression Tissue response Edit A trio of dose response curves A distinction should be made between quantification of drugs binding to receptors and drugs producing responses There may not necessarily be a linear relationship between the two values In contrast to this article s previous definition of the Hill Langmuir equation the IUPHAR defines the Hill equation in terms of the tissue response E displaystyle E as 1 E E m a x A n EC 50 n A n 1 1 EC 50 A n displaystyle begin aligned frac E E mathrm max amp frac A n text EC 50 n A n amp frac 1 1 left frac text EC 50 A right n end aligned where A displaystyle ce A is the drug concentration and EC 50 displaystyle text EC 50 is the drug concentration that produces a 50 maximal response Dissociation constants in the previous section relate to ligand binding while EC 50 displaystyle text EC 50 reflects tissue response This form of the equation can reflect tissue cell population responses to drugs and can be used to generate dose response curves The relationship between K d displaystyle K d and EC50 may be quite complex as a biological response will be the sum of myriad factors a drug will have a different biological effect if more receptors are present regardless of its affinity The Del Castillo Katz model is used to relate the Hill Langmuir equation to receptor activation by including a second equilibrium of the ligand bound receptor to an activated form of the ligand bound receptor Statistical analysis of response as a function of stimulus may be performed by regression methods such as the probit model or logit model or other methods such as the Spearman Karber method 9 Empirical models based on nonlinear regression are usually preferred over the use of some transformation of the data that linearizes the dose response relationship 10 Hill coefficient EditThe Hill coefficient is a measure of ultrasensitivity i e how steep is the response curve The Hill coefficient n displaystyle n or n H displaystyle n H may describe cooperativity or possibly other biochemical properties depending on the context in which the Hill Langmuir equation is being used When appropriate clarification needed the value of the Hill coefficient describes the cooperativity of ligand binding in the following way n gt 1 displaystyle n gt 1 Positively cooperative binding Once one ligand molecule is bound to the enzyme its affinity for other ligand molecules increases For example the Hill coefficient of oxygen binding to haemoglobin an example of positive cooperativity falls within the range of 1 7 3 2 5 n lt 1 displaystyle n lt 1 Negatively cooperative binding Once one ligand molecule is bound to the enzyme its affinity for other ligand molecules decreases n 1 displaystyle n 1 Noncooperative completely independent binding The affinity of the enzyme for a ligand molecule is not dependent on whether or not other ligand molecules are already bound When n 1 we obtain a model that can be modeled by Michaelis Menten kinetics 11 in which K D K A K M textstyle K D K A K M the Michaelis Menten constant The Hill coefficient can be calculated in terms of potency as n H log 10 81 log 10 EC 90 EC 10 displaystyle n H frac log 10 81 log 10 ce EC90 ce EC10 12 where EC 90 displaystyle ce EC90 and EC 10 displaystyle ce EC10 are the input values needed to produce the 10 and 90 of the maximal response respectively 13 Derivation from mass action kinetics EditThe Hill Langmuir equation is derived similarly to the Michaelis Menten equation 14 15 but incorporates the Hill coefficient Consider a protein P displaystyle ce P such as haemoglobin or a protein receptor with n displaystyle n binding sites for ligands L displaystyle ce L The binding of the ligands to the protein can be represented by the chemical equilibrium expression P n L k d k a P L n displaystyle ce P mathit n L lt gt k a k d P L mathit n where k a displaystyle k a forward rate or the rate of association of the protein ligand complex and k d displaystyle k d reverse rate or the complex s rate of dissociation are the reaction rate constants for the association of the ligands to the protein and their dissociation from the protein respectively 8 From the law of mass action which in turn may be derived from the principles of collision theory the apparent dissociation constant K d displaystyle K d an equilibrium constant is given by K d k d k a P L n P L n displaystyle K rm d k rm d over k rm a rm P rm L mathit n over rm PL mathit n At the same time 8 displaystyle theta the ratio of the concentration of occupied receptor to total receptor concentration is given by 8 Occupied Receptor Total Receptor P L n P P L n displaystyle theta text Occupied Receptor over text Total Receptor rm PL mathit n over rm P rm PL mathit n By using the expression obtained earlier for the dissociation constant we can replace P L n textstyle rm PL mathit n with P L n K d textstyle rm P rm L mathit n over K rm d to yield a simplified expression for 8 textstyle theta 8 P L n K d P P L n K d P L n K d P P L n L n K d L n displaystyle theta left rm P rm L mathit n over K rm d right over rm P left rm P rm L mathit n over K rm d right rm P rm L mathit n over K rm d rm P rm P rm L mathit n rm L mathit n over K rm d rm L mathit n which is a common formulation of the Hill equation 7 16 8 Assuming that the protein receptor was initially completely free unbound at a concentration P 0 textstyle rm P 0 then at any time P P L n P 0 textstyle rm P rm PL mathit n rm P 0 and 8 P L n P 0 textstyle theta rm PL mathit n over rm P 0 Consequently the Hill Langmuir Equation is also commonly written as an expression for the concentration P L n textstyle rm PL mathit n of bound protein P L n P 0 L n K d L n displaystyle rm PL mathit n rm P 0 cdot rm L mathit n over K rm d rm L mathit n 2 All of these formulations assume that the protein has n displaystyle mathit n sites to which ligands can bind In practice however the Hill Coefficient n displaystyle mathit n rarely provides an accurate approximation of the number of ligand binding sites on a protein 5 7 Consequently it has been observed that the Hill coefficient should instead be interpreted as an interaction coefficient describing the cooperativity among ligand binding sites 5 Applications EditThe Hill and Hill Langmuir equations are used extensively in pharmacology to quantify the functional parameters of a drug citation needed and are also used in other areas of biochemistry The Hill equation can be used to describe dose response relationships for example ion channel open probability P open vs ligand concentration 17 Regulation of gene transcription Edit The Hill Langmuir equation can be applied in modelling the rate at which a gene product is produced when its parent gene is being regulated by transcription factors e g activators and or repressors 11 Doing so is appropriate when a gene is regulated by multiple binding sites for transcription factors in which case the transcription factors may bind the DNA in a cooperative fashion 18 If the production of protein from gene X is up regulated activated by a transcription factor Y then the rate of production of protein X can be modeled as a differential equation in terms of the concentration of activated Y protein d d t X p r o d u c e d k Y a c t i v e n K A n Y a c t i v e n displaystyle mathrm d over mathrm d t rm X produced k cdot rm Y active mathit n over K A n rm Y active mathit n where k is the maximal transcription rate of gene X Likewise if the production of protein from gene Y is down regulated repressed by a transcription factor Z then the rate of production of protein Y can be modeled as a differential equation in terms of the concentration of activated Z protein d d t Y p r o d u c e d k K A n K A n Z a c t i v e n displaystyle mathrm d over mathrm d t rm Y produced k cdot K A mathit n over K A n rm Z active mathit n where k is the maximal transcription rate of gene Y Limitations EditBecause of its assumption that ligand molecules bind to a receptor simultaneously the Hill Langmuir equation has been criticized as a physically unrealistic model 5 Moreover the Hill coefficient should not be considered a reliable approximation of the number of cooperative ligand binding sites on a receptor 5 19 except when the binding of the first and subsequent ligands results in extreme positive cooperativity 5 Unlike more complex models the relatively simple Hill Langmuir equation provides little insight into underlying physiological mechanisms of protein ligand interactions This simplicity however is what makes the Hill Langmuir equation a useful empirical model since its use requires little a priori knowledge about the properties of either the protein or ligand being studied 2 Nevertheless other more complex models of cooperative binding have been proposed 7 For more information and examples of such models see Cooperative binding Global sensitivity measure such as Hill coefficient do not characterise the local behaviours of the s shaped curves Instead these features are well captured by the response coefficient measure 20 There is a link between Hill Coefficient and Response coefficient as follows Altszyler et al 2017 have shown that these ultrasensitivity measures can be linked 12 See also EditBinding coefficient Bjerrum plot Cooperative binding Gompertz curve Langmuir adsorption model Logistic function Michaelis Menten kinetics Monod equationNotes Edit For clarity this article will use the International Union of Basic and Clinical Pharmacology convention of distinguishing between the Hill Langmuir equation for receptor saturation and Hill equation for tissue response See Propagation of uncertainty The function f 8 log 10 8 1 8 displaystyle f theta log 10 left frac theta 1 theta right propagates errors in 8 displaystyle theta as d f d 8 d f d 8 d 8 ln 10 8 1 8 displaystyle delta f delta theta frac mathrm d f mathrm d theta frac delta theta ln 10 theta 1 theta Hence errors in values of 8 displaystyle theta near 0 displaystyle 0 or 1 displaystyle 1 are given far more weight than those for 8 0 5 displaystyle theta approx 0 5 References Edit a b c Neubig Richard R 2003 International Union of Pharmacology Committee on Receptor Nomenclature and Drug Classification XXXVIII Update on Terms and Symbols in Quantitative Pharmacology PDF Pharmacological Reviews 55 4 597 606 doi 10 1124 pr 55 4 4 PMID 14657418 S2CID 1729572 a b c d Gesztelyi Rudolf Zsuga Judit Kemeny Beke Adam Varga Balazs Juhasz Bela Tosaki Arpad 31 March 2012 The Hill equation and the origin of quantitative pharmacology Archive for History of Exact Sciences 66 4 427 438 doi 10 1007 s00407 012 0098 5 ISSN 0003 9519 S2CID 122929930 Langmuir Irving 1918 The adsorption of gases on plane surfaces of glass mica and platinum Journal of the American Chemical Society 40 9 1361 1403 doi 10 1021 ja02242a004 Hill A V 1910 01 22 The possible effects of the aggregation of the molecules of hemoglobin on its dissociation curves J Physiol 40 Suppl iv vii doi 10 1113 jphysiol 1910 sp001386 S2CID 222195613 a b c d e f g Weiss J N 1 September 1997 The Hill equation revisited uses and misuses The FASEB Journal 11 11 835 841 doi 10 1096 fasebj 11 11 9285481 ISSN 0892 6638 PMID 9285481 S2CID 827335 Proceedings of the Physiological Society January 22 1910 The Journal of Physiology 40 suppl i vii 1910 doi 10 1113 jphysiol 1910 sp001386 ISSN 1469 7793 S2CID 222195613 a b c d e Stefan Melanie I Novere Nicolas Le 27 June 2013 Cooperative Binding PLOS Computational Biology 9 6 e1003106 Bibcode 2013PLSCB 9E3106S doi 10 1371 journal pcbi 1003106 ISSN 1553 7358 PMC 3699289 PMID 23843752 a b c d e f Nelson David L Cox Michael M 2013 Lehninger principles of biochemistry 6th ed New York W H Freeman pp 158 162 ISBN 978 1429234146 Hamilton MA Russo RC Thurston RV 1977 Trimmed Spearman Karber method for estimating median lethal concentrations in toxicity bioassays Environmental Science amp Technology 11 7 714 9 Bibcode 1977EnST 11 714H doi 10 1021 es60130a004 Bates Douglas M Watts Donald G 1988 Nonlinear Regression Analysis and its Applications Wiley p 365 ISBN 9780471816430 a b Alon Uri 2007 An Introduction to Systems Biology Design Principles of Biological Circuits Nachdr ed Boca Raton FL Chapman amp Hall ISBN 978 1 58488 642 6 a b Altszyler E Ventura A C Colman Lerner A Chernomoretz A 2017 Ultrasensitivity in signaling cascades revisited Linking local and global ultrasensitivity estimations PLOS ONE 12 6 e0180083 arXiv 1608 08007 Bibcode 2017PLoSO 1280083A doi 10 1371 journal pone 0180083 PMC 5491127 PMID 28662096 Srinivasan Bharath 2021 Explicit Treatment of Non Michaelis Menten and Atypical Kinetics in Early Drug Discovery ChemMedChem 16 6 899 918 doi 10 1002 cmdc 202000791 PMID 33231926 S2CID 227157473 Srinivasan Bharath 2021 07 16 A Guide to the Michaelis Menten equation Steady state and beyond The FEBS Journal 289 20 6086 6098 doi 10 1111 febs 16124 ISSN 1742 464X PMID 34270860 Srinivasan Bharath 2020 09 27 Words of advice teaching enzyme kinetics The FEBS Journal 288 7 2068 2083 doi 10 1111 febs 15537 ISSN 1742 464X PMID 32981225 Foreman John 2003 Textbook of Receptor Pharmacology Second Edition p 14 ISBN 9780849310294 Ding S Sachs F 1999 Single Channel Properties of P2X2 Purinoceptors J Gen Physiol The Rockefeller University Press 113 5 695 720 doi 10 1085 jgp 113 5 695 PMC 2222910 PMID 10228183 Chu Dominique Zabet Nicolae Radu Mitavskiy Boris 2009 04 07 Models of transcription factor binding Sensitivity of activation functions to model assumptions PDF Journal of Theoretical Biology 257 3 419 429 Bibcode 2009JThBi 257 419C doi 10 1016 j jtbi 2008 11 026 PMID 19121637 Monod Jacque Wyman Jeffries Changeux Jean Pierre 1 May 1965 On the nature of allosteric transitions A plausible model Journal of Molecular Biology 12 1 88 118 doi 10 1016 S0022 2836 65 80285 6 PMID 14343300 Kholodenko Boris N et al 1997 Quantification of information transfer via cellular signal transduction pathways FEBS Letters 414 2 430 434 doi 10 1016 S0014 5793 97 01018 1 PMID 9315734 S2CID 19466336 Further reading EditDorland s Illustrated Medical Dictionary Coval ML December 1970 Analysis of Hill interaction coefficients and the invalidity of the Kwon and Brown equation J Biol Chem 245 23 6335 6 doi 10 1016 S0021 9258 18 62614 6 PMID 5484812 d A Heck Henry 1971 Statistical theory of cooperative binding to proteins Hill equation and the binding potential J Am Chem Soc 93 1 23 29 doi 10 1021 ja00730a004 PMID 5538860 Atkins Gordon L 1973 A simple digital computer program for estimating the parameter of the Hill Equation Eur J Biochem 33 1 175 180 doi 10 1111 j 1432 1033 1973 tb02667 x PMID 4691349 Endrenyi Laszlo Kwong F H F Fajszi Csaba 1975 Evaluation of Hill slopes and Hill coefficients when the saturation binding or velocity is not known Eur J Biochem 51 2 317 328 doi 10 1111 j 1432 1033 1975 tb03931 x PMID 1149734 Voet Donald Voet Judith G 2004 Biochemistry Weiss J N 1997 The Hill equation revisited uses and misuses FASEB Journal 11 11 835 841 doi 10 1096 fasebj 11 11 9285481 PMID 9285481 S2CID 827335 Kurganov B I Lobanov A V 2001 Criterion for Hill equation validity for description of biosensor calibration curves Anal Chim Acta 427 1 11 19 doi 10 1016 S0003 2670 00 01167 3 Goutelle Sylvain Maurin Michel Rougier Florent Barbaut Xavier Bourguignon Laurent Ducher Michel Maire Pascal 2008 The Hill equation a review of its capabilities in pharmacological modelling Fundamental amp Clinical Pharmacology 22 6 633 648 doi 10 1111 j 1472 8206 2008 00633 x PMID 19049668 S2CID 4979109 Gesztelyi R Zsuga J Kemeny Beke A Varga B Juhasz B Tosaki A 2012 The Hill equation and the origin of quantitative pharmacology Archive for History of Exact Sciences 66 4 427 38 doi 10 1007 s00407 012 0098 5 S2CID 122929930 Colquhoun D 2006 The quantitative analysis of drug receptor interactions a short history Trends Pharmacol Sci 27 3 149 57 doi 10 1016 j tips 2006 01 008 PMID 16483674 Rang HP 2006 The receptor concept pharmacology s big idea Br J Pharmacol 147 Suppl 1 S9 16 doi 10 1038 sj bjp 0706457 PMC 1760743 PMID 16402126 External links EditHill equation calculator Retrieved from https en wikipedia org w index php title Hill equation biochemistry amp oldid 1123686195, wikipedia, wiki, book, books, library,

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