In genetics , the gene density of an organism's genome is the ratio of the number of genes per number of base pairs , usually written in terms of a million base pairs, or megabase (Mb). The human genome has a gene density of 11-15 genes/Mb, while the genome of the C. elegans roundworm is estimated to have 200.[1]
Seemingly simple organisms, such as bacteria and amoebas , have a much higher gene density than humans. Bacterial DNA has a gene density on the order of 500-1000 genes/Mb. This is due several factors, including that the fact that bacterial DNA has no introns . There are also fewer codons in bacterial genes.[2]
Species edit protozoa edit species number of genes base pairs in genome (Mb) gene density Babesia microti 3,685[3] 6.4[4] 575.8 Besnoitia besnoiti 8,546[5] 58.8[6] 145.3 Cryptosporidium parvum 3,887[7] 9.1[8] 427.1 Giardia intestinalis 5,388[9] 11.5[10] 468.5 Leishmania donovani 8,123[11] 32.4[12] 250.7 Plasmodium falciparum 5,683[13] 23.5[14] 241.8 Phytophthora infestans 19,344[15] 203.2[16] 95.2 Tetrahymena thermophila 26,996[17] 130.4[18] 207 Theileria parva 4,141[19] 8.3[20] 498.9 Toxoplasma gondii 8,925[21] 64.5[22] 138.4 Trypanosoma cruzi 25,183[23] 32.5[24] 774.9
fungi edit species number of genes base pairs in genome (Mb) gene density Agaricus bisporus 11,459[25] 30.7[26] 373.3 Aspergillus nidulans 9,586[27] 30.6[28] 313.3 Aspergillus niger 10,828[29] 35.6[30] 304.2 Candida albicans 6,263[31] 14.7[32] 426.1 Cryptococcus neoformans 7,004[33] 18.6[34] 376.5 Debaryomyces hansenii 6,495[35] 12.1[36] 536.8 Encephalitozoon cuniculi 2,029[37] 2.3[38] 882.2 Eremothecium gossypii 5,356[39] 9.1[40] 588.6 Fusarium oxysporum 21,354[41] 52.4[42] 407.5 Kluyveromyces lactis 5,335[43] 10.6[44] 503.3 Lasiodiplodia theobromae 13,054[45] 43.6[46] 299.4 Neurospora crassa 10,590[47] 41.3[48] 256.4 Saccharomyces cerevisiae 6,445[49] 11.9[50] 541.6 Saccharomyces paradoxus 5,840[51] 12[52] 486.6 Schizosaccharomyces pombe 6,974[53] 12.8[54] 544.8 Talaromyces marneffei 10,138[55] 28.3[56] 358.2 Tremella mesenterica 8,292[57] 27.9[58] 297.2 Trichoderma harzianum 14,294[59] 40.7[60] 351.2 Trichophyton rubrum 8,804[61] 23.1[62] 381.1 Ustilago maydis 6,909[63] 19.9[64] 347.2 Wallemia ichthyophaga 5,000[65] 9.5[66] 526.3 Yarrowia lipolytica 7,144[67] 20.3[68] 351.9
plants edit species common name number of genes base pairs in genome (Mb) gene density Ananas comosus pineapple 25,758 382[69] 67.4 Arabidopsis thaliana thale cress 38,311[70] 119[71] 321.9 Asparagus officinalis asparagus 32,237[72] 1,187[73] 27.2 Brassica rapa field mustard 51,592[74] 333[75] 154.9 Cannabis sativa cannabis 31,170[76] 876[77] 35.6 Cajanus cajan pigeon pea 33,495[78] 593[79] 56.5 Capsicum annuum pepper 41,729[80] 2,909[81] 14.3 Coffea arabica coffee 56,902[82] 1,094[83] 52 Glycine max soybean 59,905[84] 995.7[85] 60.2 Juglans regia English walnut 37,996[86] 634.7[87] 59.9 Nicotiana tabacum tobacco 74,273[88] 3,734.2[89] 19.9 Olea europaea olive 47,911[90] 1,316.7[91] 36.4 Oryza sativa rice 35,223[92] 385[93] 91.5 Panicum hallii grass 31,528[94] 511.6[95] 61.6 Physcomitrium patens spreading earthmoss 23,747[96] 472[97] 50.3 Prunus dulcis almond 26,936[98] 236.9[99] 113.7 Prunus persica peach 26,412[100] 214.2[101] 123.3 Punica granatum pomegrante 29,281[102] 308.4[103] 94.9 Rosa chinensis rose 40,349[104] 513.9[105] 78.5 Solanum lycopersicum tomato 31,263[106] 813[107] 38.5 Solanum tuberosum potato 33,606[108] 760[109] 44.2 Theobroma cacao cocoa 24,957[110] 335[111] 74.5 Zea mays corn 49,796[112] 2,197[113] 22.7
invertebrate edit invertebrate species species common name number of genes base pairs in genome (Mb) gene density Aedes aegypti yellow fever mosquito 19,623[114] 1,274[115] 15.4 Anopheles gambiae African malaria mosquito 13,247[116] 250[117] 53 Apis mellifera honey bee 12,374[118] 226[119] 54.8 Caenorhabditis elegans C. elegans 47,632[120] 102[121] 467 Daphnia magna water flea 21,549[122] 126[123] 171 Drosophila melanogaster fruit fly 17,868[124] 137[125] 130.4 Hydra vulgaris hydra 22,980[126] 1,055[127] 21.8 Limulus polyphemus horseshoe crab 27,318[128] 1,828[129] 14.9 Octopus sinensis octopus 29,784[130] 2,719[131] 11 Pediculus humanus human louse 10,993[132] 110[133] 99.9 Strongylocentrotus purpuratus purple sea urchin 33,504[134] 921[135] 36.4
vertebrate non-mammals edit species common name number of genes base pairs in genome (Mb) gene density Alligator mississippiensis American alligator 25,279[136] 2,161[137] 11.7 Anolis carolinensis anole lizard 22,293[138] 1,799[139] 12.4 Astyanax mexicanus Mexican tetra 31,695[140] 1,263[141] 25.1 Columba livia pigeon 26,679[142] 1,063[143] 25.1 Danio rerio zebrafish 47,350[144] 1,408[145] 33.6 Gallus gallus chicken 24,402[146] 1,043[147] 23.4 Nothobranchius furzeri turquoise killifish 25,387[148] 1,052[149] 24.1 Oryzias latipes Japanese rice fish 26,846[150] 746[151] 36 Petromyzon marinus sea lamprey 22,167[152] 987[153] 22.5 Taeniopygia guttata zebra finch 21,543[154] 1,069[155] 20.2 Takifugu rubripes Japanese puffer 27,413[156] 384[157] 71.8 Xenopus tropicalis tropical clawed frog 28,863[158] 1,468[159] 19.7 Xenopus laevis African clawed frog 37,283[160] 2,718[161] 13.7
vertebrate mammals edit species common name number of genes base pairs in genome (Mb) gene density Acinonyx jubatus cheetah 34,482[162] 2,378[163] 14.5 Ailuropoda melanoleuca giant panda 32,950[164] 2,371[165] 13.9 Aotus nancymaae night monkey 31,331[166] 2,861[167] 11 Artibeus jamaicensis Jamaican fruit-eating bat 31,480[168] 2,316[169] 13.6 Arvicanthis niloticus African grass rat 31,912[170] 2,496[171] 12.8 Balaenoptera acutorostrata minke whale 26,805[172] 2,431[173] 11 Balaenoptera musculus blue whale 27,194[174] 2,105[175] 12.9 Bison bison American bison 27,488[176] 2,828[177] 9.7 Bos mutus wild yak 26,159[178] 2,703[179] 9.7 Bos taurus cattle 35,061[180] 2,715[181] 12.9 Canis lupus familiaris dog 36,717[182] 2,370[183] 15.5 Chinchilla lanigera long-tailed chinchilla 30,378[184] 2,390[185] 12.7 Felis catus cat 35,521[186] 2,521[187] 14 Gorilla gorilla gorilla 35,419[188] 3,063[189] 11.6 Homo sapiens human 44,507[190] 2,861[191] 15.5 Macaca mulatta Rhesus monkey 40,164[192] 2,970[193] 13.5 Mus musculus house mouse 42,823[194] 2,689[195] 15.9 Pan troglodytes chimpanzee 40,769[196] 3,050[197] 13.4 Rattus norvegicus brown rat 38,371[198] 2,743[199] 14 Sus scrofa pig 30,345[200] 2,459[201] 12.3
Gene count is calculated by the number of gene flags in the latest version of a given species gtf annotation file. Bear in mind that well studied organisms will probably have higher gene counts because these species have better annotation, therefore these numbers are estimates for comparison.
See also edit References edit
gene, density, genetics, gene, density, organism, genome, ratio, number, genes, number, base, pairs, usually, written, terms, million, base, pairs, megabase, human, genome, gene, density, genes, while, genome, elegans, roundworm, estimated, have, seemingly, si. In genetics the gene density of an organism s genome is the ratio of the number of genes per number of base pairs usually written in terms of a million base pairs or megabase Mb The human genome has a gene density of 11 15 genes Mb while the genome of the C elegans roundworm is estimated to have 200 1 Seemingly simple organisms such as bacteria and amoebas have a much higher gene density than humans Bacterial DNA has a gene density on the order of 500 1000 genes Mb This is due several factors including that the fact that bacterial DNA has no introns There are also fewer codons in bacterial genes 2 Contents 1 Species 1 1 protozoa 1 2 fungi 1 3 plants 1 4 invertebrate 1 5 vertebrate non mammals 1 6 vertebrate mammals 2 See also 3 ReferencesSpecies editprotozoa edit species number of genes base pairs in genome Mb gene densityBabesia microti 3 685 3 6 4 4 575 8Besnoitia besnoiti 8 546 5 58 8 6 145 3Cryptosporidium parvum 3 887 7 9 1 8 427 1Giardia intestinalis 5 388 9 11 5 10 468 5Leishmania donovani 8 123 11 32 4 12 250 7Plasmodium falciparum 5 683 13 23 5 14 241 8Phytophthora infestans 19 344 15 203 2 16 95 2Tetrahymena thermophila 26 996 17 130 4 18 207Theileria parva 4 141 19 8 3 20 498 9Toxoplasma gondii 8 925 21 64 5 22 138 4Trypanosoma cruzi 25 183 23 32 5 24 774 9fungi edit species number of genes base pairs in genome Mb gene densityAgaricus bisporus 11 459 25 30 7 26 373 3Aspergillus nidulans 9 586 27 30 6 28 313 3Aspergillus niger 10 828 29 35 6 30 304 2Candida albicans 6 263 31 14 7 32 426 1Cryptococcus neoformans 7 004 33 18 6 34 376 5Debaryomyces hansenii 6 495 35 12 1 36 536 8Encephalitozoon cuniculi 2 029 37 2 3 38 882 2Eremothecium gossypii 5 356 39 9 1 40 588 6Fusarium oxysporum 21 354 41 52 4 42 407 5Kluyveromyces lactis 5 335 43 10 6 44 503 3Lasiodiplodia theobromae 13 054 45 43 6 46 299 4Neurospora crassa 10 590 47 41 3 48 256 4Saccharomyces cerevisiae 6 445 49 11 9 50 541 6Saccharomyces paradoxus 5 840 51 12 52 486 6Schizosaccharomyces pombe 6 974 53 12 8 54 544 8Talaromyces marneffei 10 138 55 28 3 56 358 2Tremella mesenterica 8 292 57 27 9 58 297 2Trichoderma harzianum 14 294 59 40 7 60 351 2Trichophyton rubrum 8 804 61 23 1 62 381 1Ustilago maydis 6 909 63 19 9 64 347 2Wallemia ichthyophaga 5 000 65 9 5 66 526 3Yarrowia lipolytica 7 144 67 20 3 68 351 9plants edit species common name number of genes base pairs in genome Mb gene densityAnanas comosus pineapple 25 758 382 69 67 4Arabidopsis thaliana thale cress 38 311 70 119 71 321 9Asparagus officinalis asparagus 32 237 72 1 187 73 27 2Brassica rapa field mustard 51 592 74 333 75 154 9Cannabis sativa cannabis 31 170 76 876 77 35 6Cajanus cajan pigeon pea 33 495 78 593 79 56 5Capsicum annuum pepper 41 729 80 2 909 81 14 3Coffea arabica coffee 56 902 82 1 094 83 52Glycine max soybean 59 905 84 995 7 85 60 2Juglans regia English walnut 37 996 86 634 7 87 59 9Nicotiana tabacum tobacco 74 273 88 3 734 2 89 19 9Olea europaea olive 47 911 90 1 316 7 91 36 4Oryza sativa rice 35 223 92 385 93 91 5Panicum hallii grass 31 528 94 511 6 95 61 6Physcomitrium patens spreading earthmoss 23 747 96 472 97 50 3Prunus dulcis almond 26 936 98 236 9 99 113 7Prunus persica peach 26 412 100 214 2 101 123 3Punica granatum pomegrante 29 281 102 308 4 103 94 9Rosa chinensis rose 40 349 104 513 9 105 78 5Solanum lycopersicum tomato 31 263 106 813 107 38 5Solanum tuberosum potato 33 606 108 760 109 44 2Theobroma cacao cocoa 24 957 110 335 111 74 5Zea mays corn 49 796 112 2 197 113 22 7invertebrate edit invertebrate species species common name number of genes base pairs in genome Mb gene densityAedes aegypti yellow fever mosquito 19 623 114 1 274 115 15 4Anopheles gambiae African malaria mosquito 13 247 116 250 117 53Apis mellifera honey bee 12 374 118 226 119 54 8Caenorhabditis elegans C elegans 47 632 120 102 121 467Daphnia magna water flea 21 549 122 126 123 171Drosophila melanogaster fruit fly 17 868 124 137 125 130 4Hydra vulgaris hydra 22 980 126 1 055 127 21 8Limulus polyphemus horseshoe crab 27 318 128 1 828 129 14 9Octopus sinensis octopus 29 784 130 2 719 131 11Pediculus humanus human louse 10 993 132 110 133 99 9Strongylocentrotus purpuratus purple sea urchin 33 504 134 921 135 36 4vertebrate non mammals edit species common name number of genes base pairs in genome Mb gene densityAlligator mississippiensis American alligator 25 279 136 2 161 137 11 7Anolis carolinensis anole lizard 22 293 138 1 799 139 12 4Astyanax mexicanus Mexican tetra 31 695 140 1 263 141 25 1Columba livia pigeon 26 679 142 1 063 143 25 1Danio rerio zebrafish 47 350 144 1 408 145 33 6Gallus gallus chicken 24 402 146 1 043 147 23 4Nothobranchius furzeri turquoise killifish 25 387 148 1 052 149 24 1Oryzias latipes Japanese rice fish 26 846 150 746 151 36Petromyzon marinus sea lamprey 22 167 152 987 153 22 5Taeniopygia guttata zebra finch 21 543 154 1 069 155 20 2Takifugu rubripes Japanese puffer 27 413 156 384 157 71 8Xenopus tropicalis tropical clawed frog 28 863 158 1 468 159 19 7Xenopus laevis African clawed frog 37 283 160 2 718 161 13 7vertebrate mammals edit species common name number of genes base pairs in genome Mb gene densityAcinonyx jubatus cheetah 34 482 162 2 378 163 14 5Ailuropoda melanoleuca giant panda 32 950 164 2 371 165 13 9Aotus nancymaae night monkey 31 331 166 2 861 167 11Artibeus jamaicensis Jamaican fruit eating bat 31 480 168 2 316 169 13 6Arvicanthis niloticus African grass rat 31 912 170 2 496 171 12 8Balaenoptera acutorostrata minke whale 26 805 172 2 431 173 11Balaenoptera musculus blue whale 27 194 174 2 105 175 12 9Bison bison American bison 27 488 176 2 828 177 9 7Bos mutus wild yak 26 159 178 2 703 179 9 7Bos taurus cattle 35 061 180 2 715 181 12 9Canis lupus familiaris dog 36 717 182 2 370 183 15 5Chinchilla lanigera long tailed chinchilla 30 378 184 2 390 185 12 7Felis catus cat 35 521 186 2 521 187 14Gorilla gorilla gorilla 35 419 188 3 063 189 11 6Homo sapiens human 44 507 190 2 861 191 15 5Macaca mulatta Rhesus monkey 40 164 192 2 970 193 13 5Mus musculus house mouse 42 823 194 2 689 195 15 9Pan troglodytes chimpanzee 40 769 196 3 050 197 13 4Rattus norvegicus brown rat 38 371 198 2 743 199 14Sus scrofa pig 30 345 200 2 459 201 12 3Gene count is calculated by the number of gene flags in the latest version of a given species gtf annotation file Bear in mind that well studied organisms will probably have higher gene counts because these species have better annotation therefore these numbers are estimates for comparison See also editC value enigmaReferences edit Science Reference Gene Science Daily Retrieved 2013 10 15 Sands Jeff Genomes of Bacteria Lehigh University Retrieved 2013 10 15 Index of genomes refseq protozoa Babesia microti latest assembly versions GCF 000691945 2 ASM69194v2 ftp ncbi nih gov Retrieved 2020 12 31 Babesia microti ID 11700 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 31 Index of genomes refseq protozoa Besnoitia besnoiti latest assembly versions GCF 002563875 1 Bbes1 0 ftp ncbi nih gov Retrieved 2020 12 31 Besnoitia besnoiti ID 62526 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 31 Index of genomes refseq protozoa Cryptosporidium parvum latest assembly versions GCF 000165345 1 ASM16534v1 ftp ncbi nih gov Retrieved 2020 12 31 Cryptosporidium parvum ID 29 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 31 Giardia intestinalis ID 26 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 31 Giardia intestinalis ID 26 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 30 Index of genomes refseq protozoa Leishmania donovani latest assembly versions GCF 000227135 1 ASM22713v2 ftp ncbi nih gov Retrieved 2020 12 31 Leishmania donovani ID 3516 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 31 Index of genomes refseq protozoa Plasmodium falciparum latest assembly versions GCF 000002765 5 GCA 000002765 ftp ncbi nih gov Retrieved 2020 12 30 Plasmodium falciparum ID 33 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 30 Index of genomes refseq protozoa Phytophthora infestans latest assembly versions GCF 000142945 1 ASM14294v1 ftp ncbi nih gov Retrieved 2020 12 31 Phytophthora infestans ID 293 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 31 Index of genomes refseq protozoa Tetrahymena thermophila latest assembly versions GCF 000189635 1 JCVI TTA1 2 2 ftp ncbi nih gov Retrieved 2020 12 30 Tetrahymena thermophila ID 222 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 30 Index of genomes refseq protozoa Theileria parva latest assembly versions GCF 000165365 1 ASM16536v1 ftp ncbi nih gov Retrieved 2020 12 31 Theileria parva ID 38 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 31 Index of genomes refseq protozoa Toxoplasma gondii latest assembly versions GCF 000006565 2 TGA4 ftp ncbi nih gov Retrieved 2020 12 31 Toxoplasma gondii ID 30 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 31 Index of genomes refseq protozoa Trypanosoma cruzi latest assembly versions GCF 000209065 1 ASM20906v1 ftp ncbi nih gov Retrieved 2020 12 30 Trypanosoma cruzi ID 25 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 30 Index of genomes refseq fungi Agaricus bisporus latest assembly versions GCF 000300555 1 Agabi varbur 1 ftp ncbi nih gov Retrieved 2020 12 30 Agaricus bisporus ID 858 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 30 Index of genomes refseq fungi Aspergillus nidulans latest assembly versions GCF 000149205 2 ASM14920v2 ftp ncbi nih gov Retrieved 2020 12 30 Aspergillus nidulans ID 17 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 30 Index of genomes refseq fungi Aspergillus niger latest assembly versions GCF 000002855 3 ASM285v2 ftp ncbi nih gov Retrieved 2020 12 14 Aspergillus niger ID 429 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 14 Index of genomes refseq fungi Candida albicans latest assembly versions GCF 000182965 3 ASM18296v3 ftp ncbi nih gov Retrieved 2020 12 30 Candida albicans ID 21 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 30 Index of genomes refseq fungi Cryptococcus neoformans latest assembly versions GCF 000091045 1 ASM9104v1 ftp ncbi nih gov Retrieved 2020 12 14 Cryptococcus neoformans ID 61 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 14 Index of genomes refseq fungi Debaryomyces hansenii latest assembly versions GCF 000006445 2 ASM644v2 ftp ncbi nih gov Retrieved 2020 12 31 Debaryomyces hansenii ID 195 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 31 Index of genomes refseq fungi Encephalitozoon cuniculi latest assembly versions GCF 000091225 1 ASM9122v1 ftp ncbi nih gov Retrieved 2020 12 31 Encephalitozoon cuniculi ID 39 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 31 Index of genomes refseq fungi Eremothecium gossypii latest assembly versions GCF 000091025 4 ASM9102v4 ftp ncbi nih gov Retrieved 2020 12 30 Eremothecium gossypii ID 74 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 30 Index of genomes refseq fungi Fusarium oxysporum latest assembly versions GCF 000149955 1 ASM14995v2 ftp ncbi nih gov Retrieved 2020 12 31 Fusarium oxysporum ID 707 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 31 Index of genomes refseq fungi Kluyveromyces lactis latest assembly versions GCF 000002515 2 ASM251v1 ftp ncbi nih gov Retrieved 2020 12 31 Kluyveromyces lactis ID 193 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 31 Index of genomes refseq fungi Lasiodiplodia theobromae latest assembly versions GCF 012971845 1 ASM1297184v1 ftp ncbi nih gov Retrieved 2020 12 31 Lasiodiplodia theobromae ID 54334 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 31 Index of genomes refseq fungi Neurospora crassa latest assembly versions GCF 000182925 2 NC12 ftp ncbi nih gov Retrieved 2020 12 14 Neurospora crassa ID 19 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 14 Index of genomes refseq fungi Saccharomyces cerevisiae latest assembly versions GCF 000146045 2 R64 ftp ncbi nih gov Retrieved 2020 12 14 Error encountered Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 14 Index of genomes refseq fungi Saccharomyces paradoxus latest assembly versions GCF 002079055 1 ASM207905v1 ftp ncbi nih gov Retrieved 2020 12 14 Saccharomyces paradoxus ID 66 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 14 Index of genomes refseq fungi Schizosaccharomyces pombe latest assembly versions GCF 000002945 1 ASM294v2 ftp ncbi nih gov Retrieved 2020 12 14 Schizosaccharomyces pombe ID 14 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 14 Index of genomes refseq fungi Talaromyces marneffei latest assembly versions GCF 000001985 1 JCVI PMFA1 2 0 ftp ncbi nih gov Retrieved 2020 12 31 Talaromyces marneffei ID 728 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 31 Index of genomes refseq fungi Tremella mesenterica latest assembly versions GCF 000271645 1 Treme1 ftp ncbi nih gov Retrieved 2020 12 31 Tremella mesenterica ID 11041 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 31 Index of genomes refseq fungi Trichoderma harzianum latest assembly versions GCF 003025095 1 Triha v1 0 ftp ncbi nih gov Retrieved 2020 12 31 Trichoderma harzianum ID 2441 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 31 Index of genomes refseq fungi Trichophyton rubrum latest assembly versions GCF 000151425 1 ASM15142v1 ftp ncbi nih gov Retrieved 2020 12 31 Trichophyton rubrum ID 799 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 31 Index of genomes refseq fungi Ustilago maydis latest assembly versions GCF 000328475 2 Umaydis521 2 0 ftp ncbi nih gov Retrieved 2020 12 30 Ustilago maydis ID 70 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 30 Index of genomes refseq fungi Wallemia ichthyophaga latest assembly versions GCF 000400465 1 Wallemia ichthyophaga version 1 0 ftp ncbi nih gov Retrieved 2020 12 31 Wallemia ichthyophaga ID 17303 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 31 Index of genomes refseq fungi Yarrowia lipolytica latest assembly versions GCF 000002525 2 ASM252v1 ftp ncbi nih gov Retrieved 2020 12 30 Yarrowia lipolytica ID 194 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 30 Ananas comosus ID 13945 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 01 Index of genomes refseq plant Arabidopsis thaliana latest assembly versions GCF 000001735 4 TAIR10 1 ftp ncbi nih gov Retrieved 2020 12 01 Arabidopsis thaliana ID 4 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 01 Index of genomes refseq plant Asparagus officinalis latest assembly versions GCF 001876935 1 Aspof V1 ftp ncbi nih gov Retrieved 2020 12 01 Asparagus officinalis ID 10978 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 01 Index of genomes refseq plant Brassica rapa latest assembly versions GCF 000309985 2 CAAS Brap v3 01 ftp ncbi nih gov Retrieved 2020 12 01 Brassica rapa ID 229 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 01 Index of genomes refseq plant Cannabis sativa latest assembly versions GCF 900626175 2 cs10 ftp ncbi nih gov Retrieved 2020 12 01 Cannabis sativa ID 11681 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 01 Index of genomes refseq plant Cajanus cajan latest assembly versions GCF 000340665 1 C cajan V1 0 ftp ncbi nih gov Retrieved 2020 12 31 Cajanus cajan ID 2878 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 31 Index of genomes refseq plant Capsicum annuum latest assembly versions GCF 000710875 1 Pepper Zunla 1 Ref v1 0 ftp ncbi nih gov Retrieved 2020 12 31 Capsicum annuum ID 10896 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 31 Index of genomes refseq plant Coffea arabica latest assembly versions GCF 003713225 1 Cara 1 0 ftp ncbi nih gov Retrieved 2020 12 01 Coffea arabica ID 77 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 01 Index of genomes refseq plant Glycine max latest assembly versions GCF 000004515 5 Glycine max v2 1 ftp ncbi nih gov Retrieved 2021 01 01 Glycine max ID 5 Genome NCBI www ncbi nlm nih gov Retrieved 2021 01 01 Index of genomes refseq plant Juglans regia latest assembly versions GCF 001411555 2 Walnut 2 0 ftp ncbi nih gov Retrieved 2021 01 01 Juglans regia ID 17683 Genome NCBI www ncbi nlm nih gov Retrieved 2021 01 01 Index of genomes refseq plant Nicotiana tabacum latest assembly versions GCF 000715135 1 Ntab TN90 ftp ncbi nih gov Retrieved 2020 12 31 Nicotiana tabacum ID 425 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 31 Olea europaea ID 10724 Genome NCBI www ncbi nlm nih gov Retrieved 2021 01 01 Olea europaea ID 10724 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 31 Index of genomes refseq plant Oryza sativa latest assembly versions GCF 001433935 1 IRGSP 1 0 ftp ncbi nih gov Retrieved 2020 12 01 Oryza sativa ID 10 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 01 Index of genomes refseq plant Panicum hallii latest assembly versions GCF 002211085 1 PHallii v3 1 ftp ncbi nih gov Retrieved 2020 12 31 Panicum hallii ID 12791 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 31 Physcomitrium patens ID 383 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 01 Physcomitrium patens ID 383 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 01 Index of genomes refseq plant Prunus dulcis latest assembly versions GCF 902201215 1 ALMONDv2 ftp ncbi nih gov Retrieved 2020 12 31 Prunus dulcis ID 10947 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 31 Index of genomes refseq plant Prunus persica latest assembly versions GCF 000346465 2 Prunus persica NCBIv2 ftp ncbi nih gov Retrieved 2020 12 31 Prunus persica ID 388 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 31 Index of genomes refseq plant Punica granatum latest assembly versions GCF 007655135 1 ASM765513v2 ftp ncbi nih gov Retrieved 2020 12 31 Punica granatum ID 13946 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 31 Index of genomes refseq plant Rosa chinensis latest assembly versions GCF 002994745 1 RchiOBHm V2 ftp ncbi nih gov Retrieved 2020 12 31 Rosa chinensis ID 11715 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 31 Index of genomes refseq plant Solanum lycopersicum latest assembly versions GCF 000188115 4 SL3 0 ftp ncbi nih gov Retrieved 2020 12 01 Solanum lycopersicum ID 7 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 01 Index of genomes refseq plant Solanum tuberosum latest assembly versions GCF 000226075 1 SolTub 3 0 ftp ncbi nih gov Retrieved 2020 12 01 Solanum tuberosum ID 400 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 01 Index of genomes refseq plant Theobroma cacao latest assembly versions GCF 000208745 1 Criollo cocoa genome V2 ftp ncbi nih gov Retrieved 2020 12 01 Theobroma cacao ID 572 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 01 Index of genomes refseq plant Zea mays latest assembly versions GCF 902167145 1 Zm B73 REFERENCE NAM 5 0 ftp ncbi nih gov Retrieved 2020 12 01 Zea mays ID 12 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 01 Index of genomes refseq invertebrate Aedes aegypti latest assembly versions GCF 002204515 2 AaegL5 0 ftp ncbi nih gov Retrieved 2020 11 30 Aedes aegypti ID 44 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Index of genomes refseq invertebrate Anopheles gambiae latest assembly versions GCF 000005575 2 AgamP3 ftp ncbi nih gov Retrieved 2020 11 30 Anopheles gambiae ID 46 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Index of genomes refseq invertebrate Apis mellifera latest assembly versions GCF 003254395 2 Amel HAv3 1 ftp ncbi nih gov Retrieved 2020 11 30 Apis mellifera ID 48 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Index of genomes refseq invertebrate Caenorhabditis elegans latest assembly versions GCF 000002985 6 WBcel235 ftp ncbi nih gov Retrieved 2020 11 30 Caenorhabditis elegans ID 41 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Index of genomes refseq invertebrate Daphnia magna latest assembly versions GCF 003990815 1 ASM399081v1 ftp ncbi nih gov Retrieved 2020 11 30 Daphnia magna ID 10953 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Index of genomes refseq invertebrate Drosophila melanogaster latest assembly versions GCF 000001215 4 Release 6 plus ISO1 MT ftp ncbi nih gov Retrieved 2020 11 30 Drosophila melanogaster ID 47 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Index of genomes refseq invertebrate Hydra vulgaris latest assembly versions GCF 000004095 1 Hydra RP 1 0 ftp ncbi nih gov Retrieved 2020 11 30 Hydra vulgaris ID 12836 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Index of genomes refseq invertebrate Limulus polyphemus latest assembly versions GCF 000517525 1 Limulus polyphemus 2 1 2 ftp ncbi nih gov Retrieved 2020 11 30 Limulus polyphemus ID 787 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Index of genomes refseq invertebrate Octopus sinensis latest assembly versions GCF 006345805 1 ASM634580v1 ftp ncbi nih gov Retrieved 2020 11 30 Octopus sinensis ID 84214 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Index of genomes refseq invertebrate Pediculus humanus latest assembly versions GCF 000006295 1 JCVI LOUSE 1 0 ftp ncbi nih gov Retrieved 2020 11 30 Pediculus humanus ID 522 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Index of genomes refseq invertebrate Strongylocentrotus purpuratus latest assembly versions GCF 000002235 5 Spur 5 0 ftp ncbi nih gov Retrieved 2020 11 30 Strongylocentrotus purpuratus ID 86 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Index of genomes refseq vertebrate other Alligator mississippiensis latest assembly versions GCF 000281125 3 ASM28112v4 ftp ncbi nih gov Retrieved 2020 12 01 Alligator mississippiensis ID 13409 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 01 Index of genomes refseq vertebrate other Anolis carolinensis latest assembly versions GCF 000090745 1 AnoCar2 0 ftp ncbi nih gov Retrieved 2020 12 01 Anolis carolinensis ID 708 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 01 Index of genomes refseq vertebrate other Astyanax mexicanus latest assembly versions GCF 000372685 2 Astyanax mexicanus 2 0 ftp ncbi nih gov Retrieved 2020 12 01 Astyanax mexicanus ID 13073 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 01 Index of genomes refseq vertebrate other Columba livia latest assembly versions GCF 000337935 1 Cliv 1 0 ftp ncbi nih gov Retrieved 2020 12 01 Columba livia ID 10719 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 01 Index of genomes refseq vertebrate other Danio rerio latest assembly versions GCF 000002035 6 GRCz11 ftp ncbi nih gov Retrieved 2020 11 30 Danio rerio ID 50 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Index of genomes refseq vertebrate other Gallus gallus latest assembly versions GCF 000002315 6 GRCg6a ftp ncbi nih gov Retrieved 2020 11 30 Gallus gallus ID 111 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Index of genomes refseq vertebrate other Nothobranchius furzeri latest assembly versions GCF 001465895 1 Nfu 20140520 ftp ncbi nih gov Retrieved 2020 12 01 Nothobranchius furzeri ID 2642 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 01 Index of genomes refseq vertebrate other Oryzias latipes latest assembly versions GCF 002234675 1 ASM223467v1 ftp ncbi nih gov Retrieved 2020 12 01 Oryzias latipes ID 542 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 01 Index of genomes refseq vertebrate other Petromyzon marinus latest assembly versions GCF 010993605 1 kPetMar1 pri ftp ncbi nih gov Retrieved 2020 12 01 Petromyzon marinus ID 287 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 01 Index of genomes refseq vertebrate other Taeniopygia guttata latest assembly versions GCF 008822105 2 bTaeGut2 pat W v2 ftp ncbi nih gov Retrieved 2020 12 01 Taeniopygia guttata ID 367 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 01 Index of genomes refseq vertebrate other Takifugu rubripes latest assembly versions GCF 901000725 2 fTakRub1 2 ftp ncbi nih gov Retrieved 2020 12 01 Takifugu rubripes ID 63 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 01 Index of genomes refseq vertebrate other Xenopus tropicalis latest assembly versions GCF 000004195 4 UCB Xtro 10 0 ftp ncbi nih gov Retrieved 2020 12 01 Xenopus tropicalis ID 80 Genome NCBI www ncbi nlm nih gov Retrieved 2020 12 01 Index of genomes refseq vertebrate other Xenopus laevis latest assembly versions GCF 001663975 1 Xenopus laevis v2 ftp ncbi nih gov Retrieved 2020 11 30 Xenopus laevis ID 81 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Index of genomes refseq vertebrate mammalian Acinonyx jubatus latest assembly versions GCF 003709585 1 Aci jub 2 ftp ncbi nih gov Retrieved 2020 11 30 Acinonyx jubatus ID 14623 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Index of genomes refseq vertebrate mammalian Ailuropoda melanoleuca latest assembly versions GCF 002007445 1 ASM200744v2 ftp ncbi nih gov Retrieved 2020 11 30 Ailuropoda melanoleuca ID 2702 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Index of genomes refseq vertebrate mammalian Aotus nancymaae latest assembly versions GCF 000952055 2 Anan 2 0 ftp ncbi nih gov Retrieved 2020 11 30 Aotus nancymaae ID 14430 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Index of genomes refseq vertebrate mammalian Artibeus jamaicensis latest assembly versions GCF 014825515 1 WHU Ajam v2 ftp ncbi nih gov Retrieved 2020 11 30 Artibeus jamaicensis ID 12026 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Index of genomes refseq vertebrate mammalian Arvicanthis niloticus latest assembly versions GCF 011762505 1 mArvNil1 pat X ftp ncbi nih gov Retrieved 2020 11 30 Arvicanthis niloticus ID 88356 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Index of genomes refseq vertebrate mammalian Balaenoptera acutorostrata latest assembly versions GCF 000493695 1 BalAcu1 0 ftp ncbi nih gov Retrieved 2020 11 30 Balaenoptera acutorostrata ID 10769 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Index of genomes refseq vertebrate mammalian Balaenoptera musculus latest assembly versions GCF 009873245 2 mBalMus1 pri v3 ftp ncbi nih gov Retrieved 2020 11 30 Balaenoptera musculus ID 7017 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Index of genomes refseq vertebrate mammalian Bison bison latest assembly versions GCF 000754665 1 Bison UMD1 0 ftp ncbi nih gov Retrieved 2020 11 30 Bison bison ID 8907 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Index of genomes refseq vertebrate mammalian Bos mutus latest assembly versions GCF 000298355 1 BosGru v2 0 ftp ncbi nih gov Retrieved 2020 11 30 Bos mutus ID 23015 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Index of genomes refseq vertebrate mammalian Bos taurus latest assembly versions GCF 002263795 1 ARS UCD1 2 ftp ncbi nih gov Retrieved 2020 11 30 Bos taurus ID 82 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Index of genomes refseq vertebrate mammalian Canis lupus latest assembly versions GCF 000002285 3 CanFam3 1 ftp ncbi nih gov Retrieved 2020 11 30 Canis lupus familiaris ID 85 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Index of genomes refseq vertebrate mammalian Chinchilla lanigera latest assembly versions GCF 000276665 1 ChiLan1 0 ftp ncbi nih gov Retrieved 2020 11 30 Chinchilla lanigera ID 10466 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Index of genomes refseq vertebrate mammalian Felis catus latest assembly versions GCF 000181335 3 Felis catus 9 0 ftp ncbi nih gov Retrieved 2020 11 30 Felis catus ID 78 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Index of genomes refseq vertebrate mammalian Gorilla gorilla latest assembly versions GCF 008122165 1 Kamilah GGO v0 ftp ncbi nih gov Retrieved 2020 11 30 Gorilla gorilla ID 2156 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Index of genomes refseq vertebrate mammalian Homo sapiens latest assembly versions GCF 000001405 39 GRCh38 p13 ftp ncbi nih gov Retrieved 2020 11 30 Homo sapiens ID 51 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Index of genomes refseq vertebrate mammalian Macaca mulatta latest assembly versions GCF 003339765 1 Mmul 10 ftp ncbi nih gov Retrieved 2020 11 30 Macaca mulatta ID 215 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Index of genomes refseq vertebrate mammalian Mus musculus latest assembly versions GCF 000001635 27 GRCm39 ftp ncbi nih gov Retrieved 2020 11 30 Mus musculus ID 52 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Index of genomes refseq vertebrate mammalian Pan troglodytes latest assembly versions GCF 002880755 1 Clint PTRv2 ftp ncbi nih gov Retrieved 2020 11 30 Pan troglodytes ID 202 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Index of genomes refseq vertebrate mammalian Rattus norvegicus latest assembly versions GCF 000001895 5 Rnor 6 0 ftp ncbi nih gov Retrieved 2020 11 30 Rattus norvegicus ID 73 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Index of genomes refseq vertebrate mammalian Sus scrofa latest assembly versions GCF 000003025 6 Sscrofa11 1 ftp ncbi nih gov Retrieved 2020 11 30 Sus scrofa ID 84 Genome NCBI www ncbi nlm nih gov Retrieved 2020 11 30 Retrieved from https en wikipedia org w index php title Gene density amp oldid 1154126585, wikipedia, wiki , book, books, 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