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Common disease-common variant

The common disease-common variant (often abbreviated CD-CV) hypothesis predicts that common disease-causing alleles, or variants, will be found in all human populations which manifest a given disease. Common variants (not necessarily disease-causing) are known to exist in coding and regulatory sequences of genes. According to the CD-CV hypothesis, some of those variants lead to susceptibility to complex polygenic diseases. Each variant at each gene influencing a complex disease will have a small additive or multiplicative effect on the disease phenotype. These diseases, or traits, are evolutionarily neutral in part because so many genes influence the traits. The hypothesis has held in the case of putative causal variants in apolipoprotein E, including APOE ε4, associated with Alzheimer's disease.[1] IL23R has been found to be associated with Crohn's disease; the at-risk allele has a frequency of 93% in the general population [citation needed].

One common form of variation across human genomes is called a single nucleotide polymorphism (SNP). As indicated by the name, SNPs are single base changes in the DNA. SNP variants tend to be common in different human populations. These polymorphisms have been valuable as genomic signposts, or "markers", in the search for common variants that influence susceptibility to common diseases. Research has linked common SNPs to diseases such as type 2 diabetes, Alzheimer's, schizophrenia and hypertension.[2][3][4][5][6]

See also edit

References edit

  1. ^ Expanded high-resolution genetic study of 109 Swedish families with Alzheimer's disease, Anna Sillén, Jorge Andrade, Lena Lilius, Charlotte Forsell, Karin Axelman, Jacob Odeberg, Bengt Winblad and Caroline Graff, European Journal of Human Genetics (2008) 16, 202–208; doi:10.1038/sj.ejhg.5201946; published online 24 October 2007
  2. ^ Duerr, R. H.; Taylor, K. D.; Brant, S. R.; Rioux, J. D.; Silverberg, M. S.; Daly, M. J.; Steinhart, A. H.; Abraham, C.; Regueiro, M.; Griffiths, A.; Dassopoulos, T.; Bitton, A.; Yang, H.; Targan, S.; Datta, L. W.; Kistner, E. O.; Schumm, L. P.; Lee, A. T.; Gregersen, P. K.; Barmada, M. M.; Rotter, J. I.; Nicolae, D. L.; Cho, J. H. (2006). "A Genome-Wide Association Study Identifies IL23R as an Inflammatory Bowel Disease Gene". Science. 314 (5804): 1461–1463. Bibcode:2006Sci...314.1461D. doi:10.1126/science.1135245. ISSN 0036-8075. PMC 4410764. PMID 17068223.
  3. ^ Levy, Daniel; Ehret, Georg B; Rice, Kenneth; Verwoert, Germaine C; Launer, Lenore J; Dehghan, Abbas; Glazer, Nicole L; Morrison, Alanna C; Johnson, Andrew D; Aspelund, Thor; Aulchenko, Yurii; Lumley, Thomas; Köttgen, Anna; Vasan, Ramachandran S; Rivadeneira, Fernando; Eiriksdottir, Gudny; Guo, Xiuqing; Arking, Dan E; Mitchell, Gary F; Mattace-Raso, Francesco U S; Smith, Albert V; Taylor, Kent; Scharpf, Robert B; Hwang, Shih-Jen; Sijbrands, Eric J G; Bis, Joshua; Harris, Tamara B; Ganesh, Santhi K; O'Donnell, Christopher J; Hofman, Albert; Rotter, Jerome I; Coresh, Josef; Benjamin, Emelia J; Uitterlinden, André G; Heiss, Gerardo; Fox, Caroline S; Witteman, Jacqueline C M; Boerwinkle, Eric; Wang, Thomas J; Gudnason, Vilmundur; Larson, Martin G; Chakravarti, Aravinda; Psaty, Bruce M; van Duijn, Cornelia M (2009). "Genome-wide association study of blood pressure and hypertension". Nature Genetics. 41 (6): 677–687. doi:10.1038/ng.384. ISSN 1061-4036. PMC 2998712. PMID 19430479.
  4. ^ Storey, John D.; Raychaudhuri, Soumya; Plenge, Robert M.; Rossin, Elizabeth J.; Ng, Aylwin C. Y.; Purcell, Shaun M.; Sklar, Pamela; Scolnick, Edward M.; Xavier, Ramnik J.; Altshuler, David; Daly, Mark J. (2009). "Identifying Relationships among Genomic Disease Regions: Predicting Genes at Pathogenic SNP Associations and Rare Deletions". PLOS Genetics. 5 (6): e1000534. doi:10.1371/journal.pgen.1000534. ISSN 1553-7404. PMC 2694358. PMID 19557189.
  5. ^ Seshadri, Sudha (2010). "Genome-wide Analysis of Genetic Loci Associated With Alzheimer Disease". JAMA. 303 (18): 1832–1840. doi:10.1001/jama.2010.574. ISSN 0098-7484. PMC 2989531. PMID 20460622.
  6. ^ Zeggini, Eleftheria; Scott, Laura J; Saxena, Richa; Voight, Benjamin F; Marchini, Jonathan L; Hu, Tianle; de Bakker, Paul IW; Abecasis, Gonçalo R; Almgren, Peter; Andersen, Gitte; Ardlie, Kristin; Boström, Kristina Bengtsson; Bergman, Richard N; Bonnycastle, Lori L; Borch-Johnsen, Knut; Burtt, Noël P; Chen, Hong; Chines, Peter S; Daly, Mark J; Deodhar, Parimal; Ding, Chia-Jen; Doney, Alex S F; Duren, William L; Elliott, Katherine S; Erdos, Michael R; Frayling, Timothy M; Freathy, Rachel M; Gianniny, Lauren; Grallert, Harald; Grarup, Niels; Groves, Christopher J; Guiducci, Candace; Hansen, Torben; Herder, Christian; Hitman, Graham A; Hughes, Thomas E; Isomaa, Bo; Jackson, Anne U; Jørgensen, Torben; Kong, Augustine; Kubalanza, Kari; Kuruvilla, Finny G; Kuusisto, Johanna; Langenberg, Claudia; Lango, Hana; Lauritzen, Torsten; Li, Yun; Lindgren, Cecilia M; Lyssenko, Valeriya; Marvelle, Amanda F; Meisinger, Christa; Midthjell, Kristian; Mohlke, Karen L; Morken, Mario A; Morris, Andrew D; Narisu, Narisu; Nilsson, Peter; Owen, Katharine R; Palmer, Colin NA; Payne, Felicity; Perry, John R B; Pettersen, Elin; Platou, Carl; Prokopenko, Inga; Qi, Lu; Qin, Li; Rayner, Nigel W; Rees, Matthew; Roix, Jeffrey J; Sandbæk, Anelli; Shields, Beverley; Sjögren, Marketa; Steinthorsdottir, Valgerdur; Stringham, Heather M; Swift, Amy J; Thorleifsson, Gudmar; Thorsteinsdottir, Unnur; Timpson, Nicholas J; Tuomi, Tiinamaija; Tuomilehto, Jaakko; Walker, Mark; Watanabe, Richard M; Weedon, Michael N; Willer, Cristen J; Illig, Thomas; Hveem, Kristian; Hu, Frank B; Laakso, Markku; Stefansson, Kari; Pedersen, Oluf; Wareham, Nicholas J; Barroso, Inês; Hattersley, Andrew T; Collins, Francis S; Groop, Leif; McCarthy, Mark I; Boehnke, Michael; Altshuler, David (2008). "Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes". Nature Genetics. 40 (5): 638–645. doi:10.1038/ng.120. ISSN 1061-4036. PMC 2672416. PMID 18372903.

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The common disease common variant often abbreviated CD CV hypothesis predicts that common disease causing alleles or variants will be found in all human populations which manifest a given disease Common variants not necessarily disease causing are known to exist in coding and regulatory sequences of genes According to the CD CV hypothesis some of those variants lead to susceptibility to complex polygenic diseases Each variant at each gene influencing a complex disease will have a small additive or multiplicative effect on the disease phenotype These diseases or traits are evolutionarily neutral in part because so many genes influence the traits The hypothesis has held in the case of putative causal variants in apolipoprotein E including APOE e4 associated with Alzheimer s disease 1 IL23R has been found to be associated with Crohn s disease the at risk allele has a frequency of 93 in the general population citation needed One common form of variation across human genomes is called a single nucleotide polymorphism SNP As indicated by the name SNPs are single base changes in the DNA SNP variants tend to be common in different human populations These polymorphisms have been valuable as genomic signposts or markers in the search for common variants that influence susceptibility to common diseases Research has linked common SNPs to diseases such as type 2 diabetes Alzheimer s schizophrenia and hypertension 2 3 4 5 6 See also editRare functional variantReferences edit Expanded high resolution genetic study of 109 Swedish families with Alzheimer s disease Anna Sillen Jorge Andrade Lena Lilius Charlotte Forsell Karin Axelman Jacob Odeberg Bengt Winblad and Caroline Graff European Journal of Human Genetics 2008 16 202 208 doi 10 1038 sj ejhg 5201946 published online 24 October 2007 Duerr R H Taylor K D Brant S R Rioux J D Silverberg M S Daly M J Steinhart A H Abraham C Regueiro M Griffiths A Dassopoulos T Bitton A Yang H Targan S Datta L W Kistner E O Schumm L P Lee A T Gregersen P K Barmada M M Rotter J I Nicolae D L Cho J H 2006 A Genome Wide Association Study Identifies IL23R as an Inflammatory Bowel Disease Gene Science 314 5804 1461 1463 Bibcode 2006Sci 314 1461D doi 10 1126 science 1135245 ISSN 0036 8075 PMC 4410764 PMID 17068223 Levy Daniel Ehret Georg B Rice Kenneth Verwoert Germaine C Launer Lenore J Dehghan Abbas Glazer Nicole L Morrison Alanna C Johnson Andrew D Aspelund Thor Aulchenko Yurii Lumley Thomas Kottgen Anna Vasan Ramachandran S Rivadeneira Fernando Eiriksdottir Gudny Guo Xiuqing Arking Dan E Mitchell Gary F Mattace Raso Francesco U S Smith Albert V Taylor Kent Scharpf Robert B Hwang Shih Jen Sijbrands Eric J G Bis Joshua Harris Tamara B Ganesh Santhi K O Donnell Christopher J Hofman Albert Rotter Jerome I Coresh Josef Benjamin Emelia J Uitterlinden Andre G Heiss Gerardo Fox Caroline S Witteman Jacqueline C M Boerwinkle Eric Wang Thomas J Gudnason Vilmundur Larson Martin G Chakravarti Aravinda Psaty Bruce M van Duijn Cornelia M 2009 Genome wide association study of blood pressure and hypertension Nature Genetics 41 6 677 687 doi 10 1038 ng 384 ISSN 1061 4036 PMC 2998712 PMID 19430479 Storey John D Raychaudhuri Soumya Plenge Robert M Rossin Elizabeth J Ng Aylwin C Y Purcell Shaun M Sklar Pamela Scolnick Edward M Xavier Ramnik J Altshuler David Daly Mark J 2009 Identifying Relationships among Genomic Disease Regions Predicting Genes at Pathogenic SNP Associations and Rare Deletions PLOS Genetics 5 6 e1000534 doi 10 1371 journal pgen 1000534 ISSN 1553 7404 PMC 2694358 PMID 19557189 Seshadri Sudha 2010 Genome wide Analysis of Genetic Loci Associated With Alzheimer Disease JAMA 303 18 1832 1840 doi 10 1001 jama 2010 574 ISSN 0098 7484 PMC 2989531 PMID 20460622 Zeggini Eleftheria Scott Laura J Saxena Richa Voight Benjamin F Marchini Jonathan L Hu Tianle de Bakker Paul IW Abecasis Goncalo R Almgren Peter Andersen Gitte Ardlie Kristin Bostrom Kristina Bengtsson Bergman Richard N Bonnycastle Lori L Borch Johnsen Knut Burtt Noel P Chen Hong Chines Peter S Daly Mark J Deodhar Parimal Ding Chia Jen Doney Alex S F Duren William L Elliott Katherine S Erdos Michael R Frayling Timothy M Freathy Rachel M Gianniny Lauren Grallert Harald Grarup Niels Groves Christopher J Guiducci Candace Hansen Torben Herder Christian Hitman Graham A Hughes Thomas E Isomaa Bo Jackson Anne U Jorgensen Torben Kong Augustine Kubalanza Kari Kuruvilla Finny G Kuusisto Johanna Langenberg Claudia Lango Hana Lauritzen Torsten Li Yun Lindgren Cecilia M Lyssenko Valeriya Marvelle Amanda F Meisinger Christa Midthjell Kristian Mohlke Karen L Morken Mario A Morris Andrew D Narisu Narisu Nilsson Peter Owen Katharine R Palmer Colin NA Payne Felicity Perry John R B Pettersen Elin Platou Carl Prokopenko Inga Qi Lu Qin Li Rayner Nigel W Rees Matthew Roix Jeffrey J Sandbaek Anelli Shields Beverley Sjogren Marketa Steinthorsdottir Valgerdur Stringham Heather M Swift Amy J Thorleifsson Gudmar Thorsteinsdottir Unnur Timpson Nicholas J Tuomi Tiinamaija Tuomilehto Jaakko Walker Mark Watanabe Richard M Weedon Michael N Willer Cristen J Illig Thomas Hveem Kristian Hu Frank B Laakso Markku Stefansson Kari Pedersen Oluf Wareham Nicholas J Barroso Ines Hattersley Andrew T Collins Francis S Groop Leif McCarthy Mark I Boehnke Michael Altshuler David 2008 Meta analysis of genome wide association data and large scale replication identifies additional susceptibility loci for type 2 diabetes Nature Genetics 40 5 638 645 doi 10 1038 ng 120 ISSN 1061 4036 PMC 2672416 PMID 18372903 Retrieved from https en wikipedia org w index php title Common disease common variant amp oldid 1188146505, wikipedia, wiki, book, books, library,

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