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Blast2GO

January 01, 1970

Blast2GO, first published in 2005,[1][2][3][4] is a bioinformatics software tool for the automatic, high-throughput functional annotation of novel sequence data (genes proteins). It makes use of the BLAST[5] algorithm to identify similar sequences to then transfers existing functional annotation from yet characterised sequences to the novel one. The functional information is represented via the Gene Ontology (GO), a controlled vocabulary of functional attributes.[citation needed] The Gene Ontology, or GO, is a major bioinformatics initiative to unify the representation of gene and gene product attributes across all species.[6]

Blast2GO
Blast2GO
TypeBioinformatics Software
Inception2011 (2011)
ManufacturerBioBam Bioinformatics
Models madeDemo, Basic, Trial, Pro, Plugin, Commandline
Websitehttps://www.blast2go.com

See also edit

References edit

  1. ^ Conesa, A; Götz, S; García-Gómez, JM; Terol, J; Talón, M; Robles, M (Sep 15, 2005). "Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research". Bioinformatics. 21 (18): 3674–6. doi:10.1093/bioinformatics/bti610. PMID 16081474.
  2. ^ Götz, S; García-Gómez, JM; Terol, J; Williams, TD; Nagaraj, SH; Nueda, MJ; Robles, M; Talón, M; Dopazo, J; Conesa, A (June 2008). "High-throughput functional annotation and data mining with the Blast2GO suite". Nucleic Acids Research. 36 (10): 3420–35. doi:10.1093/nar/gkn176. PMC 2425479. PMID 18445632.
  3. ^ Conesa, A; Götz, S (2008). "Blast2GO: A comprehensive suite for functional analysis in plant genomics". International Journal of Plant Genomics. 2008: 1–12. doi:10.1155/2008/619832. PMC 2375974. PMID 18483572.
  4. ^ Götz, S; Arnold, R; Sebastián-León, P; Martín-Rodríguez, S; Tischler, P; Jehl, MA; Dopazo, J; Rattei, T; Conesa, A (Apr 1, 2011). "B2G-FAR, a species-centered GO annotation repository". Bioinformatics. 27 (7): 919–24. doi:10.1093/bioinformatics/btr059. PMC 3065692. PMID 21335611.
  5. ^ Altschul, SF; Gish, W; Miller, W; Myers, EW; Lipman, DJ (Oct 5, 1990). "Basic local alignment search tool". Journal of Molecular Biology. 215 (3): 403–10. doi:10.1016/S0022-2836(05)80360-2. PMID 2231712. S2CID 14441902.
  6. ^ The Gene Ontology Consortium (January 2008). "The Gene Ontology project in 2008". Nucleic Acids Res. 36 (Database issue): D440–4. doi:10.1093/nar/gkm883. PMC 2238979. PMID 17984083.
   

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January 01, 1970
blast2go, first, published, 2005, bioinformatics, software, tool, automatic, high, throughput, functional, annotation, novel, sequence, data, genes, proteins, makes, blast, algorithm, identify, similar, sequences, then, transfers, existing, functional, annotat. Blast2GO first published in 2005 1 2 3 4 is a bioinformatics software tool for the automatic high throughput functional annotation of novel sequence data genes proteins It makes use of the BLAST 5 algorithm to identify similar sequences to then transfers existing functional annotation from yet characterised sequences to the novel one The functional information is represented via the Gene Ontology GO a controlled vocabulary of functional attributes citation needed The Gene Ontology or GO is a major bioinformatics initiative to unify the representation of gene and gene product attributes across all species 6 Blast2GOBlast2GOTypeBioinformatics SoftwareInception2011 2011 ManufacturerBioBam BioinformaticsModels madeDemo Basic Trial Pro Plugin CommandlineWebsitehttps www blast2go comSee also editProtein function prediction Functional genomics BioinformaticsReferences edit Conesa A Gotz S Garcia Gomez JM Terol J Talon M Robles M Sep 15 2005 Blast2GO a universal tool for annotation visualization and analysis in functional genomics research Bioinformatics 21 18 3674 6 doi 10 1093 bioinformatics bti610 PMID 16081474 Gotz S Garcia Gomez JM Terol J Williams TD Nagaraj SH Nueda MJ Robles M Talon M Dopazo J Conesa A June 2008 High throughput functional annotation and data mining with the Blast2GO suite Nucleic Acids Research 36 10 3420 35 doi 10 1093 nar gkn176 PMC 2425479 PMID 18445632 Conesa A Gotz S 2008 Blast2GO A comprehensive suite for functional analysis in plant genomics International Journal of Plant Genomics 2008 1 12 doi 10 1155 2008 619832 PMC 2375974 PMID 18483572 Gotz S Arnold R Sebastian Leon P Martin Rodriguez S Tischler P Jehl MA Dopazo J Rattei T Conesa A Apr 1 2011 B2G FAR a species centered GO annotation repository Bioinformatics 27 7 919 24 doi 10 1093 bioinformatics btr059 PMC 3065692 PMID 21335611 Altschul SF Gish W Miller W Myers EW Lipman DJ Oct 5 1990 Basic local alignment search tool Journal of Molecular Biology 215 3 403 10 doi 10 1016 S0022 2836 05 80360 2 PMID 2231712 S2CID 14441902 The Gene Ontology Consortium January 2008 The Gene Ontology project in 2008 Nucleic Acids Res 36 Database issue D440 4 doi 10 1093 nar gkm883 PMC 2238979 PMID 17984083 nbsp nbsp This bioinformatics related article is a stub You can help Wikipedia by expanding it vte Retrieved from https en wikipedia org w index php title Blast2GO amp oldid 1212728543, wikipedia, wiki, book, books, library,

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